F414002

General Info

Members Datasets Scaffolds Average Seq Length
339 241 678 512

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0009047|Ga0395900_0009047_219_1871
Length 550
Sequence LEAHGIILSIANCPMLTLEPVQGLNQKYLQAEPRSSVKYRDLRDFIAQLEAKGDLKRITQPVSTSLEMTEISDRVLRAGGPALLFENAQHQGSKAAMPVLANLFGTPQRVAWGMGAQDVSALRDTGELLANLKEPQAPTGMRDALSKVSMLKSALWDMSPKNVRSPACQEVVLEGKDVDLNQIPLQLCWPGDVAPLLTWGLVITKGPHAKRQNLGIYRQQLIGRNKLIMRWLSHRGGALDFRDHALTNPGKPFPIAVALGTDPATILGAVTPVPDSLSEYQFAGLLRGSRTEVAKALGSDLSVPAWAEIVLEGHILPSNHPDALAPEVPEGMKPPADSSYEMALEGPYGDHTGYYNEQDWFPVFTVERITMRRNPIYHSTYTGKPPDEPAVLGVALNEVFVPLLRKQLPEIVDFYLPPEGCSYRLAVVSIRKQYAGHAKRVMFGVWSILRQFMYTKFIVVVDEDVNTRDWKEVIWAMTTRMDPVRDTVLVENTPIDYLDFASPVSGLGGKMGMDATNKWPGETQREWGTPIQMDESTKKKVDDMWSSLGL

Samples

Sample ID Description Type Environment
1 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
4 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
5 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
12 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
51 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
55 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
56 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
57 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
61 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
94 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
95 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
96 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
97 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
98 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
99 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
100 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
101 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
102 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
105 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
106 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
107 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
108 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
109 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
110 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
111 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
112 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
113 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
114 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
115 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
116 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
117 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
118 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
119 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
120 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
121 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
122 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
123 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
124 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
125 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
126 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
127 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
128 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
129 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
130 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
131 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
132 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
133 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
134 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
135 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
136 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
137 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
138 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
139 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
140 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
141 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
142 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
143 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
144 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
145 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
146 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
147 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
148 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
149 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
150 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
151 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
152 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
153 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
154 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
155 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
156 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
157 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
166 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
171 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
172 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
173 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
176 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
177 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
178 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
179 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
180 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
181 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
182 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
183 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
184 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
185 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
186 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
187 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
188 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
189 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
190 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
191 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
192 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
193 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
194 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
195 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
196 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
197 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
198 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
199 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
200 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
201 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
202 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
203 2643221569 Achromobacter sp. Root565 Isolate Unclassified
204 2643221585 Pelomonas sp. Root662 Isolate Unclassified
205 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
206 2643221594 Achromobacter sp. Root170 Isolate Unclassified
207 2643221621 Achromobacter sp. Root83 Isolate Unclassified
208 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
209 2643221638 Duganella sp. Root336D2 Isolate Unclassified
210 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
211 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
212 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
213 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
214 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
215 2643221656 Pelomonas sp. Root405 Isolate Unclassified
216 2643221660 Methylibium sp. Root1272 Isolate Unclassified
217 2738541337 Pelomonas sp. BT06 Isolate Unclassified
218 2739367655 Pusillimonas sp. YR330 Isolate Unclassified
219 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
220 2821131069 Duganella sp. 1224 Isolate Unclassified
221 2831864461 Roseateles noduli HZ7 Isolate Nodule
222 2855730933 Achromobacter sp. HZ28 Isolate Nodule
223 2855767633 Achromobacter sp. HZ34 Isolate Nodule
224 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
225 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
226 2857564685 Duganella sp. R-74599 Isolate Unclassified
227 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
228 2858950400 Achromobacter sp. K91 Isolate Unclassified
229 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
230 2881927736 Candidimonas sp. SYP-B2681 Isolate Rhizosphere
231 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
232 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
233 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
234 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
235 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
236 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
237 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
238 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
239 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
240 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified
241 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.73
Metatranscriptomes 0
Isolates 13.27

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.48
Nodule 0.88
Rhizoplane 1.18
Rhizosphere 52.21
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395900_0009047 3300037418 Bacteria 10209
2 JGI24740J21852_10000854 3300001979 Bacteria 13457
3 JGI25154J39366_1001982 3300002738 Bacteria 6014
4 JGI25157J39369_1000080 3300002741 Bacteria 85963
5 JGI25159J45721_1003352 3300002987 Bacteria 5713
6 rootL2_10004239 3300003322 Bacteria 31814
7 Ga0055529_1000885 3300003763 Bacteria 16980
8 Ga0055526_1006849 3300003771 Bacteria 6080
9 Ga0055524_1000277 3300003775 Bacteria 50913
10 Ga0055531_10000025 3300003794 Bacteria 161475
11 Ga0055531_10009949 3300003794 Bacteria 4798
12 Ga0055543_1012465 3300004625 Bacteria 1709
13 Ga0065165_1000092 3300005262 Bacteria 148435
14 Ga0065165_1000531 3300005262 Bacteria 58155
15 Ga0065165_1002887 3300005262 Bacteria 13214
16 Ga0070670_100004267 3300005331 Bacteria 11961
17 Ga0070675_100065113 3300005354 Bacteria 3013
18 Ga0070667_100004193 3300005367 Bacteria 12172
19 Ga0070667_100026757 3300005367 Bacteria 4799
20 Ga0070662_100076075 3300005457 Bacteria 2487
21 Ga0070706_100002087 3300005467 Bacteria 20361
22 Ga0070698_100033514 3300005471 Bacteria 5319
23 Ga0070699_100129965 3300005518 Bacteria 2220
24 Ga0070672_100004536 3300005543 Bacteria 9095
25 Ga0070672_100025026 3300005543 Bacteria 4421
26 Ga0068856_100005377 3300005614 Bacteria 12623
27 Ga0068856_100070879 3300005614 Bacteria 3449
28 Ga0068864_100008806 3300005618 Bacteria 8320
29 Ga0068870_10010742 3300005840 Bacteria 4217
30 Ga0068858_100002253 3300005842 Bacteria 19492
31 Ga0068862_100011649 3300005844 Bacteria 7255
32 Ga0075365_10040167 3300006038 Bacteria 3050
33 Ga0075368_10010038 3300006042 Bacteria 3416
34 Ga0075363_100025568 3300006048 Bacteria 3013
35 Ga0075364_10000226 3300006051 Bacteria 26679
36 Ga0075364_10001318 3300006051 Bacteria 13361
37 Ga0075364_10009159 3300006051 Bacteria 5931
38 Ga0075364_10017916 3300006051 Bacteria 4428
39 Ga0075364_10037748 3300006051 Bacteria 3130
40 Ga0075364_10080542 3300006051 Bacteria 2152
41 Ga0075362_10005229 3300006177 Bacteria 4733
42 Ga0075367_10020030 3300006178 Bacteria 3720
43 Ga0075366_10002718 3300006195 Bacteria 9135
44 Ga0075366_10003132 3300006195 Bacteria 8655
45 Ga0075366_10015887 3300006195 Bacteria 4320
46 Ga0075366_10018860 3300006195 Bacteria 3987
47 Ga0075366_10023531 3300006195 Bacteria 3589
48 Ga0097621_100023594 3300006237 Bacteria 4791
49 Ga0075370_10000629 3300006353 Bacteria 13627
50 Ga0075370_10001952 3300006353 Bacteria 9319
51 Ga0075370_10005171 3300006353 Bacteria 6446
52 Ga0075370_10007941 3300006353 Bacteria 5435
53 Ga0075370_10021097 3300006353 Bacteria 3567
54 Ga0068871_100060028 3300006358 Bacteria 3100
55 Ga0075434_100049443 3300006871 Bacteria 4175
56 Ga0075429_100000448 3300006880 Bacteria 30654
57 Ga0075436_100018852 3300006914 Bacteria 4725
58 Ga0075435_100082064 3300007076 Bacteria 2649
59 Ga0075435_100108870 3300007076 Bacteria 2303
60 Ga0105240_10026283 3300009093 Bacteria 7637
61 Ga0105240_10042602 3300009093 Bacteria 5784
62 Ga0114129_10202104 3300009147 Bacteria 2691
63 Ga0105248_10003540 3300009177 Bacteria 17306
64 Ga0105237_10004793 3300009545 Bacteria 15541
65 Ga0105237_10014084 3300009545 Bacteria 8366
66 Ga0105237_10094576 3300009545 Bacteria 2978
67 Ga0105239_10011214 3300010375 Bacteria 10002
68 Ga0105239_10020730 3300010375 Bacteria 7252
69 Ga0157319_1000006 3300012497 Bacteria 361506
70 Ga0157374_10029302 3300013296 Bacteria 4982
71 Ga0163162_10060263 3300013306 Bacteria 3830
72 Ga0157379_10026996 3300014968 Bacteria 5110
73 Ga0157379_10068617 3300014968 Bacteria 3170
74 Ga0157376_10007224 3300014969 Bacteria 7905
75 Ga0213872_10000074 3300021361 Bacteria 90986
76 Ga0209563_100005 3300025230 Bacteria 1774893
77 Ga0207427_100331 3300025231 Bacteria 31520
78 Ga0209258_100362 3300025242 Bacteria 61104
79 Ga0209258_101064 3300025242 Bacteria 11953
80 Ga0209646_1000352 3300025246 Bacteria 33418
81 Ga0209026_1000059 3300025250 Bacteria 226652
82 Ga0209759_1000081 3300025256 Bacteria 169943
83 Ga0209759_1001320 3300025256 Bacteria 14578
84 Ga0209759_1004555 3300025256 Bacteria 5122
85 Ga0209759_1005014 3300025256 Bacteria 4759
86 Ga0209759_1014236 3300025256 Bacteria 2114
87 Ga0209455_1000442 3300025272 Bacteria 31964
88 Ga0209455_1000553 3300025272 Bacteria 25308
89 Ga0209673_1006898 3300025273 Bacteria 5379
90 Ga0209673_1008314 3300025273 Bacteria 4629
91 Ga0209673_1014933 3300025273 Bacteria 2979
92 Ga0209676_1004935 3300025292 Bacteria 7174
93 Ga0209025_1000064 3300025294 Bacteria 301309
94 Ga0209564_1000005 3300025295 Bacteria 1147192
95 Ga0209050_1002004 3300025298 Bacteria 19035
96 Ga0209050_1002775 3300025298 Bacteria 14041
97 Ga0209050_1009952 3300025298 Bacteria 4769
98 Ga0209050_1015139 3300025298 Bacteria 3264
99 Ga0209256_1000053 3300025299 Bacteria 298731
100 Ga0209256_1000529 3300025299 Bacteria 55351
101 Ga0209257_1000032 3300025304 Bacteria 680354
102 Ga0209257_1000372 3300025304 Bacteria 90110
103 Ga0209257_1003173 3300025304 Bacteria 14620
104 Ga0207682_10033969 3300025893 Bacteria 2055
105 Ga0207643_10033874 3300025908 Bacteria 2859
106 Ga0207684_10000871 3300025910 Bacteria 34446
107 Ga0207695_10015782 3300025913 Bacteria 8874
108 Ga0207695_10033127 3300025913 Bacteria 5643
109 Ga0207671_10004349 3300025914 Bacteria 13596
110 Ga0207671_10061756 3300025914 Bacteria 2781
111 Ga0207662_10024395 3300025918 Bacteria 3480
112 Ga0207646_10035035 3300025922 Bacteria 4536
113 Ga0207650_10052106 3300025925 Bacteria 3030
114 Ga0207659_10115485 3300025926 Bacteria 2048
115 Ga0207644_10005743 3300025931 Bacteria 8073
116 Ga0207706_10001782 3300025933 Bacteria 21153
117 Ga0207706_10028912 3300025933 Bacteria 4948
118 Ga0207669_10032864 3300025937 Bacteria 2920
119 Ga0207669_10047987 3300025937 Bacteria 2534
120 Ga0207691_10001513 3300025940 Bacteria 23121
121 Ga0207691_10084721 3300025940 Bacteria 2845
122 Ga0207689_10037516 3300025942 Bacteria 4019
123 Ga0207689_10079063 3300025942 Bacteria 2703
124 Ga0207667_10056372 3300025949 Bacteria 4128
125 Ga0207658_10003775 3300025986 Bacteria 10669
126 Ga0207658_10092155 3300025986 Bacteria 2353
127 Ga0207708_10058767 3300026075 Bacteria 2934
128 Ga0207702_10000645 3300026078 Bacteria 38152
129 Ga0207648_10022898 3300026089 Bacteria 5603
130 Ga0207676_10060632 3300026095 Bacteria 2993
131 Ga0207674_10037979 3300026116 Bacteria 5002
132 Ga0207698_10052344 3300026142 Bacteria 3127
133 Ga0209996_1000779 3300027395 Bacteria 3761
134 Ga0209995_1003609 3300027471 Bacteria 2465
135 Ga0209968_1000467 3300027526 Bacteria 6450
136 Ga0209966_1000006 3300027695 Bacteria 102095
137 Ga0209974_10028513 3300027876 Bacteria 1849
138 Ga0268265_10113835 3300028380 Bacteria 2214
139 Ga0265336_10000003 3300028666 Bacteria 423158
140 Ga0307517_10000499 3300028786 Bacteria 67326
141 Ga0307515_10000066 3300028794 Bacteria 244076
142 Ga0307515_10014950 3300028794 Bacteria 14341
143 Ga0307515_10052688 3300028794 Bacteria 6027
144 Ga0265324_10000728 3300029957 Bacteria 21942
145 Ga0307512_10014710 3300030522 Bacteria 7283
146 Ga0265332_10000030 3300031238 Bacteria 175141
147 Ga0265327_10000028 3300031251 Bacteria 361066
148 Ga0265327_10018461 3300031251 Bacteria 4322
149 Ga0265316_10000456 3300031344 Bacteria 46381
150 Ga0307513_10004294 3300031456 Bacteria 19052
151 Ga0307513_10013595 3300031456 Bacteria 9981
152 Ga0307509_10003393 3300031507 Bacteria 24259
153 Ga0307509_10004339 3300031507 Bacteria 20572
154 Ga0307509_10067329 3300031507 Bacteria 3752
155 Ga0307509_10168593 3300031507 Bacteria 2073
156 Ga0307408_100000026 3300031548 Bacteria 261688
157 Ga0307508_10000041 3300031616 Bacteria 147868
158 Ga0307508_10000194 3300031616 Bacteria 73425
159 Ga0307508_10005884 3300031616 Bacteria 11575
160 Ga0307514_10004245 3300031649 Bacteria 13261
161 Ga0307516_10001561 3300031730 Bacteria 31504
162 Ga0307516_10002583 3300031730 Bacteria 24044
163 Ga0307406_10111181 3300031901 Bacteria 1887
164 Ga0307412_10001598 3300031911 Bacteria 12487
165 Ga0307414_10011820 3300032004 Bacteria 5139
166 Ga0307510_10002141 3300033180 Bacteria 22301
167 Ga0307510_10006302 3300033180 Bacteria 14153
168 Ga0307510_10161729 3300033180 Bacteria 1834
169 Ga0373939_0000016 3300035114 Bacteria 62934
170 Ga0373960_0000438 3300035121 Bacteria 8149
171 Ga0373943_0022636 3300035170 Bacteria 2915
172 Ga0373942_0002398 3300035207 Bacteria 4555
173 Ga0373931_0000623 3300035691 Bacteria 14685
174 Ga0373937_0110561 3300036401 Bacteria 2556
175 Ga0373925_0003540 3300037068 Bacteria 12046
176 Ga0395905_0000140 3300037471 Bacteria 120221
177 Ga0395905_0015087 3300037471 Bacteria 7355
178 Ga0395905_0232051 3300037471 Bacteria 1725
179 Ga0395901_0057772 3300038443 Bacteria 4035
180 Ga0436365_0658021 3300039437 Bacteria 3864
181 Ga0436361_0692684 3300039447 Bacteria 133303
182 Ga0436361_0703210 3300039447 Bacteria 30399
183 Ga0436361_0939166 3300039447 Bacteria 85026
184 Ga0451793_0147833 3300041452 Bacteria 2579
185 Ga0439431_0002661 3300041997 Bacteria 3938
186 Ga0439437_000494 3300042000 Bacteria 3900
187 Ga0439455_0003036 3300042012 Bacteria 3154
188 Ga0450917_000124 3300042120 Bacteria 4860
189 Ga0450890_002916 3300042127 Bacteria 2302
190 Ga0450891_000078 3300042129 Bacteria 8021
191 Ga0450892_000076 3300042130 Bacteria 10891
192 Ga0450889_000813 3300042144 Bacteria 3364
193 Ga0450893_0006301 3300042532 Bacteria 1917
194 Ga0451577_0007354 3300042876 Bacteria 10826
195 Ga0451577_0014354 3300042876 Bacteria 7385
196 Ga0466969_0005512 3300044656 Bacteria 6727
197 Ga0466972_0008203 3300044658 Bacteria 5237
198 Ga0466966_0014428 3300044684 Bacteria 5232
199 Ga0466966_0047016 3300044684 Bacteria 2753
200 Ga0466961_0007574 3300044693 Bacteria 6913
201 Ga0466964_0004744 3300044706 Bacteria 5023
202 Ga0453684_0034152 3300044712 Bacteria 7068
203 Ga0453684_0167763 3300044712 Bacteria 2590
204 Ga0466968_0005507 3300044735 Bacteria 4741
205 Ga0466957_0025806 3300044842 Bacteria 3483
206 Ga0466959_0004173 3300045049 Bacteria 9628
207 Ga0466959_0036947 3300045049 Bacteria 3608
208 Ga0451576_0020220 3300045051 Bacteria 7251
209 Ga0466958_0026018 3300045836 Bacteria 3455
210 Ga0495592_0000237 3300046454 Bacteria 47510
211 Ga0495650_0008966 3300046471 Bacteria 5752
212 Ga0495650_0023948 3300046471 Bacteria 2894
213 Ga0495607_0000026 3300046501 Bacteria 158900
214 Ga0495632_0002551 3300046519 Bacteria 13797
215 Ga0495632_0007559 3300046519 Bacteria 6807
216 Ga0495632_0019545 3300046519 Bacteria 3687
217 Ga0495625_0005245 3300046660 Bacteria 11922
218 Ga0495625_0021636 3300046660 Bacteria 4947
219 Ga0495660_0013559 3300046810 Bacteria 4723
220 Ga0495687_001087 3300047443 Bacteria 26673
221 Ga0496108_0011524 3300048911 Bacteria 7187
222 Ga0496112_0042772 3300048915 Bacteria 4433
223 Ga0496116_0007092 3300048919 Bacteria 10032
224 Ga0496118_0023305 3300048921 Bacteria 5381
225 Ga0496119_0015174 3300048922 Bacteria 5960
226 Ga0496120_0003202 3300048923 Bacteria 15219
227 Ga0496121_0000164 3300048924 Bacteria 145421
228 Ga0496121_0053774 3300048924 Bacteria 3371
229 Ga0496122_0001706 3300048925 Bacteria 34056
230 Ga0496122_0071626 3300048925 Bacteria 2469
231 Ga0496123_0001919 3300048926 Bacteria 27137
232 Ga0496124_0000104 3300048927 Bacteria 177382
233 Ga0496124_0051981 3300048927 Bacteria 3483
234 Ga0496125_0000241 3300048928 Bacteria 112044
235 Ga0501032_0001403 3300049569 Bacteria 19162
236 Ga0501033_0001527 3300049570 Bacteria 20453
237 Ga0501034_0002124 3300049571 Bacteria 24631
238 Ga0501036_0000060 3300049572 Bacteria 72151
239 Ga0501037_0002003 3300049573 Bacteria 14761
240 Ga0501037_0100792 3300049573 Bacteria 2085
241 Ga0501038_0002769 3300049574 Bacteria 16313
242 Ga0501038_0028535 3300049574 Bacteria 4958
243 Ga0501046_0003351 3300049580 Bacteria 14710
244 Ga0501047_0003715 3300049581 Bacteria 14372
245 Ga0501047_0083725 3300049581 Bacteria 3066
246 Ga0501211_001862 3300049658 Bacteria 2251
247 Ga0501233_008313 3300049668 Bacteria 1996
248 Ga0501221_006716 3300049704 Bacteria 1953
249 Ga0501035_0002356 3300049822 Bacteria 18582
250 Ga0501035_0005534 3300049822 Bacteria 11938
251 Ga0501035_0010352 3300049822 Bacteria 8646
252 Ga0501044_0000269 3300049823 Bacteria 65825
253 Ga0501044_0004549 3300049823 Bacteria 15506
254 Ga0501044_0010049 3300049823 Bacteria 10283
255 nmdc:mga00v17_10352_c1 3300050491 Bacteria 5088
256 nmdc:mga00v17_15518_c1 3300050491 Bacteria 4276
257 nmdc:mga00v17_15558_c1 3300050491 Bacteria 4270
258 nmdc:mga00v17_47268_c1 3300050491 Bacteria 2606
259 nmdc:mga00v17_75778_c1 3300050491 Bacteria 2092
260 nmdc:mga0k408_417_c2 3300050493 Bacteria 21558
261 nmdc:mga0k408_4468_c1 3300050493 Bacteria 7421
262 nmdc:mga0k408_53488_c2 3300050493 Bacteria 2048
263 nmdc:mga0k408_725_c1 3300050493 Bacteria 18088
264 nmdc:mga0k408_8521_c1 3300050493 Bacteria 5507
265 nmdc:mga07m45_1227_c1 3300050496 Bacteria 11613
266 nmdc:mga07m45_160_c1 3300050496 Bacteria 27032
267 nmdc:mga07m45_18012_c1 3300050496 Bacteria 3804
268 nmdc:mga07m45_2906_c1 3300050496 Bacteria 8118
269 nmdc:mga07m45_6496_c1 3300050496 Bacteria 5914
270 nmdc:mga09592_5371_c1 3300050508 Bacteria 10418
271 nmdc:mga06r32_12814_c1 3300050510 Bacteria 7578
272 nmdc:mga0n895_139958_c1 3300050512 Bacteria 2448
273 nmdc:mga0n895_46888_c1 3300050512 Bacteria 4223
274 nmdc:mga0a205_38455_c1 3300050515 Bacteria 4603
275 Ga0500578_0000537 3300053086 Bacteria 46023
276 Ga0500644_0001341 3300053088 Bacteria 6599
277 Ga0500651_0003413 3300053093 Bacteria 8685
278 Ga0500651_0103776 3300053093 Bacteria 1740
279 Ga0500594_0001621 3300053118 Bacteria 4891
280 Ga0500628_003675 3300053129 Bacteria 2533
281 Ga0500652_000626 3300053131 Bacteria 12124
282 Ga0500559_0000021 3300053136 Bacteria 129980
283 Ga0500568_0018808 3300053139 Bacteria 3013
284 Ga0500600_0028455 3300053149 Bacteria 3306
285 Ga0500622_0000423 3300053156 Bacteria 40034
286 Ga0500622_0002981 3300053156 Bacteria 11729
287 Ga0500622_0008254 3300053156 Bacteria 5842
288 Ga0500634_0024794 3300053161 Bacteria 3264
289 Ga0500634_0048926 3300053161 Bacteria 2281
290 Ga0500587_002818 3300053739 Bacteria 2456
291 Ga0590071_003925 3300059421 Bacteria 3638
292 Ga0590074_005246 3300059423 Bacteria 2145
293 Ga0466962_0002612 3300061719 Bacteria 8562
294 Ga0466962_0018972 3300061719 Bacteria 3304
295 2587727816 2585428057 Bacteria 6737412
296 2587733868 2585428058 Bacteria 6853932
297 2587754495 2585428062 Bacteria 6842168
298 2588292350 2588253510 Bacteria 6901809
299 2599903826 2599185292 Bacteria 6290804
300 2643745094 2643221544 Bacteria 5886209
301 2643863893 2643221569 Bacteria 6064337
302 2643935755 2643221585 Bacteria 5812563
303 2643972567 2643221592 Bacteria 6608788
304 2643982596 2643221594 Bacteria 5811388
305 2644121402 2643221621 Bacteria 6212786
306 2644138425 2643221625 Bacteria 6512927
307 2644215495 2643221638 Bacteria 6579467
308 2644222961 2643221639 Bacteria 6649903
309 2644248292 2643221644 Bacteria 6865017
310 2644260069 2643221646 Bacteria 6433402
311 2644273075 2643221648 Bacteria 6521465
312 2644302678 2643221654 Bacteria 5273570
313 2644317538 2643221656 Bacteria 5809961
314 2644338928 2643221660 Bacteria 4208257
315 2739057716 2738541337 Bacteria 6183410
316 2739611731 2739367655 Bacteria 4051151
317 2809034706 2808606395 Bacteria 6020352
318 2821133394 2821131069 Bacteria 6108407
319 2831869768 2831864461 Bacteria 6502356
320 2855734779 2855730933 Bacteria 7047938
321 2855770563 2855767633 Bacteria 7049357
322 2857541861 2857537821 Bacteria 5248181
323 2857546351 2857542790 Bacteria 5326616
324 2857570292 2857564685 Bacteria 6290584
325 2857577395 2857576091 Bacteria 5465855
326 2858952969 2858950400 Bacteria 6783797
327 2881418020 2881412998 Bacteria 6492157
328 2881931149 2881927736 Bacteria 3993927
329 2886851951 2886848708 Bacteria 5632523
330 2887377620 2887375801 Bacteria 5334027
331 2895513531 2895511927 Bacteria 6802080
332 2904532820 2904530477 Bacteria 5876334
333 2904593727 2904589729 Bacteria 6113573
334 2904604127 2904601388 Bacteria 5884906
335 2919081645 2919079590 Bacteria 5946433
336 2998345478 2998344455 Bacteria 4222996
337 8002393048 8002392321 Bacteria 4159911
338 8048746961 8048746797 Bacteria 3557226
339 8055227347 8055225921 Bacteria 3341787
340 Ga0395900_0009047
341 JGI24740J21852_10000854
342 JGI25154J39366_1001982
343 JGI25157J39369_1000080
344 JGI25159J45721_1003352
345 rootL2_10004239
346 Ga0055529_1000885
347 Ga0055526_1006849
348 Ga0055524_1000277
349 Ga0055531_10000025
350 Ga0055531_10009949
351 Ga0055543_1012465
352 Ga0065165_1000092
353 Ga0065165_1000531
354 Ga0065165_1002887
355 Ga0070670_100004267
356 Ga0070675_100065113
357 Ga0070667_100004193
358 Ga0070667_100026757
359 Ga0070662_100076075
360 Ga0070706_100002087
361 Ga0070698_100033514
362 Ga0070699_100129965
363 Ga0070672_100004536
364 Ga0070672_100025026
365 Ga0068856_100005377
366 Ga0068856_100070879
367 Ga0068864_100008806
368 Ga0068870_10010742
369 Ga0068858_100002253
370 Ga0068862_100011649
371 Ga0075365_10040167
372 Ga0075368_10010038
373 Ga0075363_100025568
374 Ga0075364_10000226
375 Ga0075364_10001318
376 Ga0075364_10009159
377 Ga0075364_10017916
378 Ga0075364_10037748
379 Ga0075364_10080542
380 Ga0075362_10005229
381 Ga0075367_10020030
382 Ga0075366_10002718
383 Ga0075366_10003132
384 Ga0075366_10015887
385 Ga0075366_10018860
386 Ga0075366_10023531
387 Ga0097621_100023594
388 Ga0075370_10000629
389 Ga0075370_10001952
390 Ga0075370_10005171
391 Ga0075370_10007941
392 Ga0075370_10021097
393 Ga0068871_100060028
394 Ga0075434_100049443
395 Ga0075429_100000448
396 Ga0075436_100018852
397 Ga0075435_100082064
398 Ga0075435_100108870
399 Ga0105240_10026283
400 Ga0105240_10042602
401 Ga0114129_10202104
402 Ga0105248_10003540
403 Ga0105237_10004793
404 Ga0105237_10014084
405 Ga0105237_10094576
406 Ga0105239_10011214
407 Ga0105239_10020730
408 Ga0157319_1000006
409 Ga0157374_10029302
410 Ga0163162_10060263
411 Ga0157379_10026996
412 Ga0157379_10068617
413 Ga0157376_10007224
414 Ga0213872_10000074
415 Ga0209563_100005
416 Ga0207427_100331
417 Ga0209258_100362
418 Ga0209258_101064
419 Ga0209646_1000352
420 Ga0209026_1000059
421 Ga0209759_1000081
422 Ga0209759_1001320
423 Ga0209759_1004555
424 Ga0209759_1005014
425 Ga0209759_1014236
426 Ga0209455_1000442
427 Ga0209455_1000553
428 Ga0209673_1006898
429 Ga0209673_1008314
430 Ga0209673_1014933
431 Ga0209676_1004935
432 Ga0209025_1000064
433 Ga0209564_1000005
434 Ga0209050_1002004
435 Ga0209050_1002775
436 Ga0209050_1009952
437 Ga0209050_1015139
438 Ga0209256_1000053
439 Ga0209256_1000529
440 Ga0209257_1000032
441 Ga0209257_1000372
442 Ga0209257_1003173
443 Ga0207682_10033969
444 Ga0207643_10033874
445 Ga0207684_10000871
446 Ga0207695_10015782
447 Ga0207695_10033127
448 Ga0207671_10004349
449 Ga0207671_10061756
450 Ga0207662_10024395
451 Ga0207646_10035035
452 Ga0207650_10052106
453 Ga0207659_10115485
454 Ga0207644_10005743
455 Ga0207706_10001782
456 Ga0207706_10028912
457 Ga0207669_10032864
458 Ga0207669_10047987
459 Ga0207691_10001513
460 Ga0207691_10084721
461 Ga0207689_10037516
462 Ga0207689_10079063
463 Ga0207667_10056372
464 Ga0207658_10003775
465 Ga0207658_10092155
466 Ga0207708_10058767
467 Ga0207702_10000645
468 Ga0207648_10022898
469 Ga0207676_10060632
470 Ga0207674_10037979
471 Ga0207698_10052344
472 Ga0209996_1000779
473 Ga0209995_1003609
474 Ga0209968_1000467
475 Ga0209966_1000006
476 Ga0209974_10028513
477 Ga0268265_10113835
478 Ga0265336_10000003
479 Ga0307517_10000499
480 Ga0307515_10000066
481 Ga0307515_10014950
482 Ga0307515_10052688
483 Ga0265324_10000728
484 Ga0307512_10014710
485 Ga0265332_10000030
486 Ga0265327_10000028
487 Ga0265327_10018461
488 Ga0265316_10000456
489 Ga0307513_10004294
490 Ga0307513_10013595
491 Ga0307509_10003393
492 Ga0307509_10004339
493 Ga0307509_10067329
494 Ga0307509_10168593
495 Ga0307408_100000026
496 Ga0307508_10000041
497 Ga0307508_10000194
498 Ga0307508_10005884
499 Ga0307514_10004245
500 Ga0307516_10001561
501 Ga0307516_10002583
502 Ga0307406_10111181
503 Ga0307412_10001598
504 Ga0307414_10011820
505 Ga0307510_10002141
506 Ga0307510_10006302
507 Ga0307510_10161729
508 Ga0373939_0000016
509 Ga0373960_0000438
510 Ga0373943_0022636
511 Ga0373942_0002398
512 Ga0373931_0000623
513 Ga0373937_0110561
514 Ga0373925_0003540
515 Ga0395905_0000140
516 Ga0395905_0015087
517 Ga0395905_0232051
518 Ga0395901_0057772
519 Ga0436365_0658021
520 Ga0436361_0692684
521 Ga0436361_0703210
522 Ga0436361_0939166
523 Ga0451793_0147833
524 Ga0439431_0002661
525 Ga0439437_000494
526 Ga0439455_0003036
527 Ga0450917_000124
528 Ga0450890_002916
529 Ga0450891_000078
530 Ga0450892_000076
531 Ga0450889_000813
532 Ga0450893_0006301
533 Ga0451577_0007354
534 Ga0451577_0014354
535 Ga0466969_0005512
536 Ga0466972_0008203
537 Ga0466966_0014428
538 Ga0466966_0047016
539 Ga0466961_0007574
540 Ga0466964_0004744
541 Ga0453684_0034152
542 Ga0453684_0167763
543 Ga0466968_0005507
544 Ga0466957_0025806
545 Ga0466959_0004173
546 Ga0466959_0036947
547 Ga0451576_0020220
548 Ga0466958_0026018
549 Ga0495592_0000237
550 Ga0495650_0008966
551 Ga0495650_0023948
552 Ga0495607_0000026
553 Ga0495632_0002551
554 Ga0495632_0007559
555 Ga0495632_0019545
556 Ga0495625_0005245
557 Ga0495625_0021636
558 Ga0495660_0013559
559 Ga0495687_001087
560 Ga0496108_0011524
561 Ga0496112_0042772
562 Ga0496116_0007092
563 Ga0496118_0023305
564 Ga0496119_0015174
565 Ga0496120_0003202
566 Ga0496121_0000164
567 Ga0496121_0053774
568 Ga0496122_0001706
569 Ga0496122_0071626
570 Ga0496123_0001919
571 Ga0496124_0000104
572 Ga0496124_0051981
573 Ga0496125_0000241
574 Ga0501032_0001403
575 Ga0501033_0001527
576 Ga0501034_0002124
577 Ga0501036_0000060
578 Ga0501037_0002003
579 Ga0501037_0100792
580 Ga0501038_0002769
581 Ga0501038_0028535
582 Ga0501046_0003351
583 Ga0501047_0003715
584 Ga0501047_0083725
585 Ga0501211_001862
586 Ga0501233_008313
587 Ga0501221_006716
588 Ga0501035_0002356
589 Ga0501035_0005534
590 Ga0501035_0010352
591 Ga0501044_0000269
592 Ga0501044_0004549
593 Ga0501044_0010049
594 nmdc:mga00v17_10352_c1
595 nmdc:mga00v17_15518_c1
596 nmdc:mga00v17_15558_c1
597 nmdc:mga00v17_47268_c1
598 nmdc:mga00v17_75778_c1
599 nmdc:mga0k408_417_c2
600 nmdc:mga0k408_4468_c1
601 nmdc:mga0k408_53488_c2
602 nmdc:mga0k408_725_c1
603 nmdc:mga0k408_8521_c1
604 nmdc:mga07m45_1227_c1
605 nmdc:mga07m45_160_c1
606 nmdc:mga07m45_18012_c1
607 nmdc:mga07m45_2906_c1
608 nmdc:mga07m45_6496_c1
609 nmdc:mga09592_5371_c1
610 nmdc:mga06r32_12814_c1
611 nmdc:mga0n895_139958_c1
612 nmdc:mga0n895_46888_c1
613 nmdc:mga0a205_38455_c1
614 Ga0500578_0000537
615 Ga0500644_0001341
616 Ga0500651_0003413
617 Ga0500651_0103776
618 Ga0500594_0001621
619 Ga0500628_003675
620 Ga0500652_000626
621 Ga0500559_0000021
622 Ga0500568_0018808
623 Ga0500600_0028455
624 Ga0500622_0000423
625 Ga0500622_0002981
626 Ga0500622_0008254
627 Ga0500634_0024794
628 Ga0500634_0048926
629 Ga0500587_002818
630 Ga0590071_003925
631 Ga0590074_005246
632 Ga0466962_0002612
633 Ga0466962_0018972
634 2587727816
635 2587733868
636 2587754495
637 2588292350
638 2599903826
639 2643745094
640 2643863893
641 2643935755
642 2643972567
643 2643982596
644 2644121402
645 2644138425
646 2644215495
647 2644222961
648 2644248292
649 2644260069
650 2644273075
651 2644302678
652 2644317538
653 2644338928
654 2739057716
655 2739611731
656 2809034706
657 2821133394
658 2831869768
659 2855734779
660 2855770563
661 2857541861
662 2857546351
663 2857570292
664 2857577395
665 2858952969
666 2881418020
667 2881931149
668 2886851951
669 2887377620
670 2895513531
671 2904532820
672 2904593727
673 2904604127
674 2919081645
675 2998345478
676 8002393048
677 8048746961
678 8055227347

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20696

UbiD_C

3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain

390

515

0.99

PF01977

UbiD

3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain

161

385

0.96

PF20695

UbiD_N

3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain

46

129

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6h6x-assembly1.cif.gz_B structure of an evolved dimeric form of the ubid-class enzyme hmff from pelotomaculum thermopropionicum in complex with prfmn 0.8417 3 457
6h6v-assembly1.cif.gz_E structure of the ubid-class enzyme hmff from pelotomaculum thermopropionicum in complex with fmn 0.8406 4 451
6r30-assembly1.cif.gz_A aspergillus niger ferulic acid decarboxylase (fdc) l439g variant in complex with the covalent adduct formed between prfmn cofactor and phenylpropiolic acid (int1') 0.8399 5 452
6ev9-assembly1.cif.gz_A-2 structure of e277d a. niger fdc1 with prfmn in the hydroxylated form 0.8395 5 452
6ev3-assembly1.cif.gz_A structure of wild type a. niger fdc1 that has been illuminated with uv light, with prfmn in the iminium and ketimine form 0.8387 5 452
ID Description Score Start End Superfamily
af_Q03034_1_339_2.30.110.10 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8399 5 366 2.30.110.10
2idbB02 Alpha Beta;3-Layer(aba) Sandwich;UbiD C-terminal domain-like;UbiD C-terminal domain-like 0.8183 366 474 3.40.1670.10
af_Q03034_1_339_2.30.110.10 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8141 5 366 2.30.110.10
4r0mA02 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.8052 389 432 3.30.300.30
af_Q58533_290_403_3.40.1670.10 Alpha Beta;3-Layer(aba) Sandwich;UbiD C-terminal domain-like;UbiD C-terminal domain-like 0.7647 370 461 3.40.1670.10
ID Description Score Start End GO Terms
AF-A0A3S0SRA6-F1-model_v4 deleted 0.9861 1 81
AF-A0A3M5CNN9-F1-model_v4 deleted 0.985 1 82
AF-A0A7H4PCC5-F1-model_v4 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) 0.9836 1 80 GO:0005829
GO:0006744
GO:0008694
AF-A0A485B8V1-F1-model_v4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) 0.9756 1 76 GO:0005829
GO:0006744
GO:0008694
AF-A0A377DZQ2-F1-model_v4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) 0.9755 1 72 GO:0005829
GO:0006744
GO:0008694

Map