|
Taxon Oid |
3300031456
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States |
| Genome Name Sample Name |
Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300031456 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.5 |
| Img Submission Id |
202174 |
|
Gold Analysis Project Id
|
Ga0307513
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0321500
|
|
Gold Study Id
|
Gs0135154
|
| Add Date |
11/09/2018 00:00:00 |
| Assembly Method |
SPAdes v. 3.12.0 |
| Has Coverage |
True |
| Public Release Date |
01/08/2019 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Kabir Peay; Michael Van Nuland |
| Contact Email |
[email protected] |
| Contact Name |
Kabir Peay |
| Award Doi |
10.46936/10.25585/60000790 |
| Funding Program |
CSP |
| Funding Year |
2018 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA518314 |
| Ncbi Biosample Accession |
SAMN10863954 |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
748.000000 |
| Geographic Location |
USA: Washington |
| Habitat |
ectomycorrhiza |
| Isolation |
Populus trichocarpa roots |
| Isolation Country |
8855 |
| Latitude |
45.9233 |
| Longitude |
-120.701 |
| Sample Collection Date |
2017/8/16 |
| Host Name |
Populus trichocarpa |
| Genome Size Assembled |
2325142524 |
| Gene Count Assembled |
3984526 |