|
Taxon Oid |
3300027876
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling |
| Genome Name Sample Name |
Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300027876 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.2 |
| Img Submission Id |
187592 |
|
Gold Analysis Project Id
|
Ga0209974
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0089084
|
|
Gold Study Id
|
Gs0110179
|
| Add Date |
05/13/2018 00:00:00 |
| Assembly Method |
SPAdes v. 3.11.1 |
| Funding Agency |
E; D; O |
| Has Coverage |
True |
| Public Release Date |
11/10/2018 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Michael Sadowsky; Susannah Tringe |
| Contact Email |
[email protected] |
| Contact Name |
Susannah Tringe |
| Award Doi |
10.46936/10.25585/60007615 |
| Funding Program |
Director's Science |
| Funding Year |
2014 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA366994 |
| Ncbi Biosample Accession |
SAMN06267772 |
| Sequencing Method |
Illumina HiSeq 2500 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Geographic Location |
Joint Genome Institute, California, USA |
| Habitat |
Arabidopsis thaliana rhizosphere |
| Isolation |
Arabidopsis thaliana rhizosphere |
| Isolation Country |
8855 |
| Latitude |
37.9314 |
| Longitude |
-122.022 |
| Sample Collection Date |
2014/1/8 |
| Host Name |
Arabidopsis thaliana |
| Genome Size Assembled |
1239285674 |
| Gene Count Assembled |
3513745 |