|
Taxon Oid |
3300048922
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA |
| Genome Name Sample Name |
Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300048922 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.25 |
| Img Submission Id |
257907 |
|
Gold Analysis Project Id
|
Ga0496119
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0568558
|
|
Gold Study Id
|
Gs0154093
|
| Add Date |
11/09/2021 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
01/03/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Carolina Cordova |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Carolina Cordova; Phil Robertson |
| Contact Email |
[email protected] |
| Contact Name |
Carolina Cordova |
| Award Doi |
10.46936/10.25585/60001351 |
| Funding Program |
BRC-GLBRC |
| Funding Year |
2020 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
288.000000 |
| Geographic Location |
USA: Michigan |
| Habitat |
Root |
| Isolation |
switchgrass roots from greenhouse pot |
| Isolation Country |
8855 |
| Latitude |
42.4058 |
| Longitude |
-85.4023 |
| Sample Collection Date |
2019/7/31 |
| Host Name |
Panicum virgatum |
| Genome Size Assembled |
873367982 |
| Gene Count Assembled |
1281856 |