|
Taxon Oid |
3300028666
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States |
| Genome Name Sample Name |
Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300028666 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.4 |
| Img Submission Id |
193583 |
|
Gold Analysis Project Id
|
Ga0265336
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0306244
|
|
Gold Study Id
|
Gs0134277
|
| Add Date |
08/02/2018 00:00:00 |
| Assembly Method |
SPAdes v. 3.11.1 |
| Has Coverage |
True |
| Public Release Date |
10/01/2018 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Rebecca Neumann |
| Contact Email |
[email protected] |
| Contact Name |
Rebecca Neumann |
| Award Doi |
10.46936/jejc.proj.2015.49017/60005777 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2016 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA502713 |
| Ncbi Biosample Accession |
SAMN10350569 |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
20.000000 |
| Geographic Location |
USA: Seattle, Washington |
| Habitat |
rhizosphere |
| Isolation |
Peat Soil |
| Isolation Country |
8855 |
| Latitude |
47.6516 |
| Longitude |
-122.304 |
| Sample Collection Date |
2018/2/5 |
| Host Name |
Carex aquatilis |
| Genome Size Assembled |
581164518 |
| Gene Count Assembled |
1351643 |