|
Taxon Oid |
3300044712
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States |
| Genome Name Sample Name |
Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300044712 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.23 |
| Img Submission Id |
251736 |
|
Gold Analysis Project Id
|
Ga0453684
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0505442
|
|
Gold Study Id
|
Gs0149415
|
| Add Date |
04/14/2021 00:00:00 |
| Assembly Method |
metaspades v. 3.14.1 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
05/24/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Angelia Seyfferth |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Angelia Seyfferth; Clara Chan |
| Contact Email |
[email protected] |
| Contact Name |
Angelia Seyfferth |
| Award Doi |
10.46936/10.25585/60001124 |
| Funding Program |
CSP |
| Funding Year |
2017 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA1014123 |
| Ncbi Biosample Accession |
SAMN37319656 |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Depth In Meters |
10.000000 |
| Geographic Location |
USA: Newark, Delaware |
| Habitat |
Rhizosphere soil |
| Isolation |
Rhizosphere soil from rice plant in paddy mesocosm |
| Isolation Country |
8855 |
| Latitude |
39.6 |
| Longitude |
-75.8 |
| Sample Collection Date |
2017/8/10 |
| Host Name |
Oryza sativa |
| Genome Size Assembled |
3415743187 |
| Gene Count Assembled |
5059222 |