|
Taxon Oid |
3300050508
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Populus root and rhizosphere microbial communities from Tennessee, USA |
| Genome Name Sample Name |
Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300050508 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Populus root and rhizosphere microbial communities from Tennessee, USA |
| Img Release Pipeline Version |
NMDC version of IMG Annotation Pipeline v.5.0.25 |
| Img Submission Id |
261835 |
|
Gold Analysis Project Id
|
Ga0528814
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0116342
|
|
Gold Study Id
|
Gs0103573
|
| Add Date |
02/26/2022 00:00:00 |
| Assembly Method |
MEGAHIT v. 0.2.0 |
| Has Coverage |
True |
| Public Release Date |
02/26/2022 00:00:00 |
| Submission Type |
Reanalysis |
| In File |
Yes |
| Submitter Name |
Amy Chen |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Dale Pelletier |
| Contact Email |
[email protected] |
| Contact Name |
Dale Pelletier |
| Award Doi |
10.46936/10.25585/60000910 |
| Funding Program |
CSP |
| Funding Year |
2014 |
| Is Published |
True |
| Pubmed Id |
30320216 |
| Ncbi Bioproject Accession |
PRJNA375668 |
| Ncbi Biosample Accession |
SAMN06343970 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Depth In Meters |
0.000000 |
| Elevation In Meters |
0.000000 |
| Geographic Location |
USA: Tennessee |
| Habitat |
Populus rhizosphere |
| Isolation |
Rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
35.8443 |
| Longitude |
-83.9607 |
| Sample Collection Date |
2014/8/14 |
| Host Name |
Populus |
| Genome Size Assembled |
3171614382 |
| Gene Count Assembled |
7047224 |