|
Taxon Oid |
3300059423
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA |
| Genome Name Sample Name |
Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300059423 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.1.11 |
| Img Submission Id |
288647 |
|
Gold Analysis Project Id
|
Ga0590074
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0690032
|
|
Gold Study Id
|
Gs0160699
|
| Add Date |
12/03/2022 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
12/03/2023 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Laura Meredith |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
A. Elizabeth Arnold; Joanne Shorter; Jordan Krechmer; Joseph Roscioli; Laura Meredith; Malak Tfaily; William Pauli |
| Contact Email |
[email protected] |
| Contact Name |
Laura Meredith |
| Award Doi |
10.46936/fics.proj.2021.60045/60000398 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2022 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Depth In Meters |
0.000000 to 0.150000 |
| Elevation In Meters |
0.000000 |
| Geographic Location |
USA: Maricopa, Arizona |
| Habitat |
Rhizosphere soil |
| Isolation |
Sorghum rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
33.0774 |
| Longitude |
-111.975 |
| Sample Collection Date |
2021/8/10 |
| Host Name |
Sorghum bicolor |
| Genome Size Assembled |
294892543 |
| Gene Count Assembled |
804743 |