|
Taxon Oid |
3300039447
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil |
| Genome Name Sample Name |
Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300039447 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.15 |
| Img Submission Id |
228871 |
|
Gold Analysis Project Id
|
Ga0436361
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0238805
|
|
Gold Study Id
|
Gs0131210
|
| Add Date |
06/21/2020 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.2.7 |
| Comments |
Released on PI's request |
| Has Coverage |
False |
| Public Release Date |
07/08/2021 00:00:00 |
| Submission Type |
Reanalysis |
| In File |
Yes |
| Submitter Name |
Antonio Camargo |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Grazielle Teodoro; Isabel Gerhardt; Johannes (Hans) Lambers; Patricia Costa; Rafael Oliveira; Rafael Souza; Ricardo Dante |
| Contact Email |
[email protected] |
| Contact Name |
Rafael Oliveira |
| Award Doi |
10.46936/10.25585/60000701 |
| Funding Program |
CSP |
| Funding Year |
2017 |
| Is Published |
True |
| Pubmed Id |
31366912 |
| Ncbi Bioproject Accession |
PRJNA441429 |
| Ncbi Biosample Accession |
SAMN08777778 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
1226.000000 |
| Geographic Location |
Brazil: Minas Gerais |
| Habitat |
rhizosphere |
| Isolation |
Vellozia epidendroides roots |
| Isolation Country |
8709 |
| Latitude |
-19.2822 |
| Longitude |
-43.5936 |
| Sample Collection Date |
2017/3/6 |
| Host Name |
Vellozia epidendroides |
| Genome Size Assembled |
1326075150 |
| Gene Count Assembled |
2152607 |