|
Taxon Oid |
3300061719
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal |
| Genome Name Sample Name |
Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300061719 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.v5.0.25.aws |
| Img Submission Id |
300582 |
|
Gold Analysis Project Id
|
Ga0466962
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0532790
|
|
Gold Study Id
|
Gs0150749
|
| Add Date |
05/10/2023 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
01/11/2024 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Laura Mason |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Laura Mason; Richard Dick; Virginia Rich |
| Contact Email |
[email protected] |
| Contact Name |
Richard Dick |
| Award Doi |
10.46936/10.25585/60001287 |
| Funding Program |
CSP |
| Funding Year |
2020 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
43.000000 |
| Geographic Location |
Senegal: Thies |
| Habitat |
Rhizosphere |
| Isolation |
Rhizosphere soil |
| Isolation Country |
8830 |
| Latitude |
14.75 |
| Longitude |
-16.85 |
| Sample Collection Date |
2019/9/1 |
| Host Name |
Pennisetum glaucum |
| Genome Size Assembled |
760755153 |
| Gene Count Assembled |
1294236 |