|
Taxon Oid |
3300032004
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States |
| Genome Name Sample Name |
Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300032004 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.5 |
| Img Submission Id |
203804 |
|
Gold Analysis Project Id
|
Ga0307414
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0321401
|
|
Gold Study Id
|
Gs0135151
|
| Add Date |
12/05/2018 00:00:00 |
| Assembly Method |
SPAdes v. 3.12.0 |
| Has Coverage |
True |
| Public Release Date |
02/03/2019 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Amelie Gaudin; Jorge L. Rodrigues |
| Contact Email |
[email protected] |
| Contact Name |
Amelie Gaudin |
| Award Doi |
10.46936/10.25585/60000783 |
| Funding Program |
CSP |
| Funding Year |
2016 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA539590 |
| Ncbi Biosample Accession |
SAMN11532177 |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
52.000000 |
| Geographic Location |
USA: California |
| Habitat |
rhizosphere |
| Isolation |
rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
38.5 |
| Longitude |
-121.7 |
| Sample Collection Date |
2016/10/24 |
| Host Name |
Zea mays |
| Genome Size Assembled |
4380144348 |
| Gene Count Assembled |
10791458 |