|
Taxon Oid |
3300038443
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States |
| Genome Name Sample Name |
Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300038443 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.14 |
| Img Submission Id |
223923 |
|
Gold Analysis Project Id
|
Ga0395901
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0440415
|
|
Gold Study Id
|
Gs0142245
|
| Add Date |
03/30/2020 00:00:00 |
| Assembly Method |
metaspades v. 3.13.0 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
03/30/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Trent Northen |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Trent Northen |
| Contact Email |
[email protected] |
| Contact Name |
Trent Northen |
| Award Doi |
10.46936/10.25585/60001258 |
| Funding Program |
Director's Science |
| Funding Year |
2019 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA712346 |
| Ncbi Biosample Accession |
SAMN18261521 |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
39.000000 |
| Geographic Location |
USA: Walnut Creek, California |
| Habitat |
Rhizosphere |
| Isolation |
EcoFAB chamber |
| Isolation Country |
8855 |
| Latitude |
37.9315 |
| Longitude |
-122.021 |
| Sample Collection Date |
2018/11/28 |
| Genome Size Assembled |
2559506045 |
| Gene Count Assembled |
4202199 |