F300722

General Info

Members Datasets Scaffolds Average Seq Length
195 139 390 369

Family's Representative Sequence

Representative Sequence 3300049743|Ga0501081_0219354|Ga0501081_0219354_10_1041
Length 343
Sequence VQDGHEVWMEKAAGRGSGFPDEDYAQAGARIVDSAAEVWEAADLILKVKEPIEPEWPRMRSGQTIFTYFHFAASAELTRAVVDSGAVALAYETVEADGQLPLLVPMSEVAGRMAIQEGAKYLEKYFGGRGILLGGVPGTPRAEVLILGGGVVGINSAKMAAGMGAHVTILDVNLDRLRYLDDVMPANVSTLLSDPATIREGIRLADLVVGAVLLPGAKAPHLVKRADLASMQEGSVIVDVAVDQGGCIETTRPTTHEDPTYVVDGVIHYCVANMPGAVPRTSTIALTNATFPYARRLAREGWRAACRRDAGLRLGLNVVEGHVTYPGVAEAFGLTHTPVDEVL

Samples

Sample ID Description Type Environment
1 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
13 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
14 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
36 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
57 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
58 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
59 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
60 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
61 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
62 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
63 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
64 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
65 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
69 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
70 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
75 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
76 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
82 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
88 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
99 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
100 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
101 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
102 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
105 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
106 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
133 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
134 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
135 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
138 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
139 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.87
Metatranscriptomes 4.1
Isolates 1.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.51
Rhizosphere 94.87
Stem 0
Stem Tuber 0
Unclassified 0.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501081_0219354 3300049743 Bacteria 1383
2 Ga0065715_10183502 3300005293 Bacteria 1460
3 Ga0070658_10001566 3300005327 Bacteria 19385
4 Ga0070690_100159102 3300005330 Bacteria 1546
5 Ga0070682_100000006 3300005337 Bacteria 369078
6 Ga0068868_100000562 3300005338 Bacteria 24927
7 Ga0070675_100239645 3300005354 Bacteria 1585
8 Ga0070671_100185565 3300005355 Bacteria 1762
9 Ga0070714_100021176 3300005435 Bacteria 5317
10 Ga0070672_100051933 3300005543 Bacteria 3199
11 Ga0068855_100065040 3300005563 Bacteria 4251
12 Ga0068855_100089086 3300005563 Bacteria 3563
13 Ga0068852_100049362 3300005616 Bacteria 3600
14 Ga0068864_100000054 3300005618 Bacteria 129210
15 Ga0068851_10000485 3300005834 Bacteria 17424
16 Ga0068858_100000523 3300005842 Bacteria 40323
17 Ga0068860_100038861 3300005843 Bacteria 4553
18 Ga0097621_100248770 3300006237 Bacteria 1556
19 Ga0075428_100049222 3300006844 Bacteria 4624
20 Ga0075428_100218636 3300006844 Bacteria 2058
21 Ga0075430_100012522 3300006846 Bacteria 7220
22 Ga0075433_10011350 3300006852 Bacteria 7171
23 Ga0075434_100012791 3300006871 Bacteria 7966
24 Ga0075429_100065205 3300006880 Bacteria 3171
25 Ga0105240_10116770 3300009093 Bacteria 3219
26 Ga0105245_10007841 3300009098 Bacteria 9351
27 Ga0114129_10008459 3300009147 Bacteria 14662
28 Ga0105239_10053076 3300010375 Bacteria 4447
29 Ga0157370_10254413 3300013104 Bacteria 1624
30 Ga0157369_10185869 3300013105 Bacteria 2185
31 Ga0157378_10009994 3300013297 Bacteria 8275
32 Ga0163162_10218364 3300013306 Bacteria 2036
33 Ga0157372_10398687 3300013307 Bacteria 1603
34 Ga0157375_10000018 3300013308 Bacteria 285123
35 Ga0157375_10298837 3300013308 Bacteria 1773
36 Ga0157380_10273730 3300014326 Bacteria 1541
37 Ga0157376_10396112 3300014969 Bacteria 1334
38 Ga0213875_10000161 3300021388 Bacteria 70921
39 Ga0207656_10000126 3300025321 Bacteria 29065
40 Ga0207682_10022641 3300025893 Bacteria 2477
41 Ga0207705_10004333 3300025909 Bacteria 10735
42 Ga0207684_10133177 3300025910 Bacteria 2133
43 Ga0207695_10000223 3300025913 Bacteria 151749
44 Ga0207649_10082182 3300025920 Bacteria 2088
45 Ga0207681_10187056 3300025923 Bacteria 1582
46 Ga0207659_10205873 3300025926 Bacteria 1574
47 Ga0207687_10007001 3300025927 Bacteria 7431
48 Ga0207687_10118880 3300025927 Unclassified 1973
49 Ga0207644_10039881 3300025931 Bacteria 3317
50 Ga0207644_10276474 3300025931 Bacteria 1347
51 Ga0207670_10000303 3300025936 Bacteria 29521
52 Ga0207704_10107050 3300025938 Bacteria 1880
53 Ga0207691_10057375 3300025940 Bacteria 3544
54 Ga0207691_10066965 3300025940 Bacteria 3248
55 Ga0207667_10085398 3300025949 Bacteria 3267
56 Ga0207677_10000011 3300026023 Bacteria 199704
57 Ga0207703_10000008 3300026035 Bacteria 373718
58 Ga0207676_10000028 3300026095 Bacteria 237195
59 Ga0209974_10002074 3300027876 Bacteria 7329
60 Ga0268266_10146999 3300028379 Bacteria 2120
61 Ga0268264_10031558 3300028381 Bacteria 4343
62 Ga0265336_10005745 3300028666 Bacteria 4540
63 Ga0265338_10032230 3300028800 Bacteria 5118
64 Ga0265324_10000006 3300029957 Bacteria 267048
65 Ga0265332_10042823 3300031238 Bacteria 1956
66 Ga0265325_10000128 3300031241 Bacteria 51989
67 Ga0265325_10000389 3300031241 Bacteria 31049
68 Ga0265339_10005730 3300031249 Bacteria 8248
69 Ga0265339_10021390 3300031249 Bacteria 3764
70 Ga0265331_10000160 3300031250 Bacteria 85512
71 Ga0265313_10000747 3300031595 Bacteria 33303
72 Ga0316575_10026609 3300031665 Bacteria 2248
73 Ga0316579_10069648 3300031691 Bacteria 1665
74 Ga0265314_10003387 3300031711 Bacteria 15449
75 Ga0316576_10070859 3300031727 Bacteria 2571
76 Ga0316578_10040442 3300031728 Bacteria 2695
77 Ga0316578_10099218 3300031728 Bacteria 1745
78 Ga0316577_10034157 3300031733 Bacteria 2842
79 Ga0316577_10048095 3300031733 Bacteria 2382
80 Ga0307413_10014479 3300031824 Bacteria 4007
81 Ga0307413_10066287 3300031824 Bacteria 2252
82 Ga0307410_10084783 3300031852 Bacteria 2234
83 Ga0307410_10152843 3300031852 Bacteria 1720
84 Ga0307409_100053083 3300031995 Bacteria 3112
85 Ga0307409_100081975 3300031995 Bacteria 2610
86 Ga0307409_100086253 3300031995 Bacteria 2555
87 Ga0307411_10012137 3300032005 Bacteria 4684
88 Ga0316583_10000545 3300032133 Bacteria 11345
89 Ga0316583_10014018 3300032133 Bacteria 2891
90 Ga0316580_10001922 3300032139 Bacteria 5593
91 Ga0316593_10001384 3300032168 Bacteria 5308
92 Ga0316593_10002010 3300032168 Bacteria 4690
93 Ga0316592_1006514 3300033524 Bacteria 2251
94 Ga0316592_1022537 3300033524 Bacteria 1347
95 Ga0316596_1000640 3300033541 Bacteria 6251
96 Ga0316596_1000939 3300033541 Bacteria 5544
97 Ga0316596_1003623 3300033541 Bacteria 3403
98 Ga0316596_1005466 3300033541 Bacteria 2904
99 Ga0316574_0003866 3300035398 Bacteria 7778
100 Ga0373937_0016128 3300036401 Bacteria 6628
101 Ga0373937_0213844 3300036401 Bacteria 1814
102 Ga0316582_0008175 3300036647 Bacteria 5610
103 Ga0316582_0020470 3300036647 Bacteria 3891
104 Ga0316582_0026764 3300036647 Bacteria 3475
105 Ga0316582_0030941 3300036647 Bacteria 3266
106 Ga0316582_0109762 3300036647 Bacteria 1835
107 Ga0316582_0133150 3300036647 Bacteria 1671
108 Ga0316584_0006316 3300036712 Bacteria 8026
109 Ga0316584_0111861 3300036712 Bacteria 2043
110 Ga0316584_0141216 3300036712 Bacteria 1796
111 Ga0395900_0106443 3300037418 Bacteria 2881
112 Ga0395898_0491111 3300037466 Bacteria 1168
113 Ga0436364_0531667 3300037853 Bacteria 70971
114 Ga0436364_0594181 3300037853 Bacteria 2015
115 Ga0436364_0813724 3300037853 Bacteria 1306
116 Ga0395901_0163167 3300038443 Bacteria 2340
117 Ga0400484_22725 3300038725 Bacteria 3396
118 Ga0400485_18934 3300038735 Bacteria 1992
119 Ga0436365_1418795 3300039437 Bacteria 1613
120 Ga0436361_1201066 3300039447 Bacteria 1320
121 Ga0450898_009137 3300042134 Bacteria 1579
122 Ga0451577_0002708 3300042876 Bacteria 20620
123 Ga0466972_0087006 3300044658 Bacteria 1485
124 Ga0453684_0000368 3300044712 Bacteria 185018
125 Ga0453684_0004769 3300044712 Bacteria 27970
126 Ga0451576_0000191 3300045051 Bacteria 154184
127 Ga0451576_0018787 3300045051 Bacteria 7558
128 Ga0495618_0023430 3300046514 Bacteria 3817
129 Ga0495630_0001330 3300046517 Bacteria 16962
130 Ga0495667_0038410 3300046559 Bacteria 3188
131 Ga0495635_0227339 3300046663 Bacteria 1261
132 Ga0495657_0085649 3300046675 Bacteria 2031
133 Ga0495613_0005335 3300046689 Bacteria 9655
134 Ga0495624_0023016 3300046690 Bacteria 4111
135 Ga0495674_0020243 3300047319 Bacteria 6161
136 Ga0495684_0004841 3300047471 Bacteria 10509
137 Ga0495684_0005249 3300047471 Bacteria 10088
138 Ga0495684_0063315 3300047471 Bacteria 2812
139 Ga0496105_0102924 3300048908 Bacteria 2358
140 Ga0501033_0058834 3300049570 Bacteria 2838
141 Ga0501034_0001529 3300049571 Bacteria 30362
142 Ga0501034_0002285 3300049571 Bacteria 23522
143 Ga0501034_0002506 3300049571 Bacteria 22045
144 Ga0501034_0006574 3300049571 Bacteria 12476
145 Ga0501034_0013148 3300049571 Bacteria 8529
146 Ga0501034_0378102 3300049571 Bacteria 1342
147 Ga0501036_0027856 3300049572 Bacteria 4777
148 Ga0501036_0195439 3300049572 Bacteria 1702
149 Ga0501036_0365686 3300049572 Bacteria 1204
150 Ga0501037_0022120 3300049573 Bacteria 4705
151 Ga0501038_0001448 3300049574 Bacteria 21797
152 Ga0501040_0020142 3300049576 Bacteria 4444
153 Ga0501042_0053154 3300049578 Bacteria 2890
154 Ga0501043_0209600 3300049579 Bacteria 1511
155 Ga0501046_0008079 3300049580 Bacteria 9197
156 Ga0501046_0103076 3300049580 Bacteria 2187
157 Ga0501046_0110770 3300049580 Bacteria 2097
158 Ga0501047_0005028 3300049581 Bacteria 12411
159 Ga0501047_0029542 3300049581 Bacteria 5285
160 Ga0501047_0039880 3300049581 Bacteria 4542
161 Ga0501047_0070414 3300049581 Bacteria 3368
162 Ga0501048_0259591 3300049582 Bacteria 1234
163 Ga0501069_0009013 3300049585 Bacteria 5265
164 Ga0501070_0002468 3300049586 Bacteria 16200
165 Ga0501070_0013894 3300049586 Bacteria 6780
166 Ga0501072_0040579 3300049588 Bacteria 3655
167 Ga0501072_0101323 3300049588 Bacteria 2289
168 Ga0501074_0063625 3300049590 Bacteria 2657
169 Ga0501075_0083689 3300049591 Bacteria 2416
170 Ga0501076_0027556 3300049592 Bacteria 4406
171 Ga0501076_0039956 3300049592 Bacteria 3685
172 Ga0501079_0023031 3300049741 Bacteria 4782
173 Ga0501079_0221719 3300049741 Bacteria 1477
174 Ga0501080_0036514 3300049742 Bacteria 4586
175 Ga0501080_0055770 3300049742 Bacteria 3680
176 Ga0501081_0077203 3300049743 Bacteria 2327
177 Ga0501044_0001001 3300049823 Bacteria 34006
178 Ga0501044_0004954 3300049823 Bacteria 14895
179 Ga0501044_0253163 3300049823 Bacteria 1701
180 Ga0501045_0006504 3300049824 Bacteria 8100
181 Ga0501045_0129201 3300049824 Bacteria 1878
182 nmdc:mga09592_59631_c1 3300050508 Bacteria 3226
183 nmdc:mga0qj67_52358_c1 3300050509 Bacteria 2728
184 nmdc:mga06r32_54949_c1 3300050510 Bacteria 3819
185 nmdc:mga06r32_67976_c1 3300050510 Bacteria 3441
186 nmdc:mga0n895_38376_c1 3300050512 Bacteria 4641
187 nmdc:mga0a205_6846_c1 3300050515 Bacteria 10310
188 Ga0501084_0159578 3300054114 Bacteria 1902
189 Ga0590074_000849 3300059423 Bacteria 4730
190 Ga0590075_002650 3300059424 Bacteria 4277
191 Ga0590077_009514 3300059426 Bacteria 1994
192 Ga0501082_0207924 3300060353 Bacteria 1703
193 Ga0530510_0100827 3300061734 Bacteria 2111
194 2688069540 2687453257 Bacteria 6784659
195 2688391338 2687453341 Bacteria 6534136
196 Ga0501081_0219354
197 Ga0065715_10183502
198 Ga0070658_10001566
199 Ga0070690_100159102
200 Ga0070682_100000006
201 Ga0068868_100000562
202 Ga0070675_100239645
203 Ga0070671_100185565
204 Ga0070714_100021176
205 Ga0070672_100051933
206 Ga0068855_100065040
207 Ga0068855_100089086
208 Ga0068852_100049362
209 Ga0068864_100000054
210 Ga0068851_10000485
211 Ga0068858_100000523
212 Ga0068860_100038861
213 Ga0097621_100248770
214 Ga0075428_100049222
215 Ga0075428_100218636
216 Ga0075430_100012522
217 Ga0075433_10011350
218 Ga0075434_100012791
219 Ga0075429_100065205
220 Ga0105240_10116770
221 Ga0105245_10007841
222 Ga0114129_10008459
223 Ga0105239_10053076
224 Ga0157370_10254413
225 Ga0157369_10185869
226 Ga0157378_10009994
227 Ga0163162_10218364
228 Ga0157372_10398687
229 Ga0157375_10000018
230 Ga0157375_10298837
231 Ga0157380_10273730
232 Ga0157376_10396112
233 Ga0213875_10000161
234 Ga0207656_10000126
235 Ga0207682_10022641
236 Ga0207705_10004333
237 Ga0207684_10133177
238 Ga0207695_10000223
239 Ga0207649_10082182
240 Ga0207681_10187056
241 Ga0207659_10205873
242 Ga0207687_10007001
243 Ga0207687_10118880
244 Ga0207644_10039881
245 Ga0207644_10276474
246 Ga0207670_10000303
247 Ga0207704_10107050
248 Ga0207691_10057375
249 Ga0207691_10066965
250 Ga0207667_10085398
251 Ga0207677_10000011
252 Ga0207703_10000008
253 Ga0207676_10000028
254 Ga0209974_10002074
255 Ga0268266_10146999
256 Ga0268264_10031558
257 Ga0265336_10005745
258 Ga0265338_10032230
259 Ga0265324_10000006
260 Ga0265332_10042823
261 Ga0265325_10000128
262 Ga0265325_10000389
263 Ga0265339_10005730
264 Ga0265339_10021390
265 Ga0265331_10000160
266 Ga0265313_10000747
267 Ga0316575_10026609
268 Ga0316579_10069648
269 Ga0265314_10003387
270 Ga0316576_10070859
271 Ga0316578_10040442
272 Ga0316578_10099218
273 Ga0316577_10034157
274 Ga0316577_10048095
275 Ga0307413_10014479
276 Ga0307413_10066287
277 Ga0307410_10084783
278 Ga0307410_10152843
279 Ga0307409_100053083
280 Ga0307409_100081975
281 Ga0307409_100086253
282 Ga0307411_10012137
283 Ga0316583_10000545
284 Ga0316583_10014018
285 Ga0316580_10001922
286 Ga0316593_10001384
287 Ga0316593_10002010
288 Ga0316592_1006514
289 Ga0316592_1022537
290 Ga0316596_1000640
291 Ga0316596_1000939
292 Ga0316596_1003623
293 Ga0316596_1005466
294 Ga0316574_0003866
295 Ga0373937_0016128
296 Ga0373937_0213844
297 Ga0316582_0008175
298 Ga0316582_0020470
299 Ga0316582_0026764
300 Ga0316582_0030941
301 Ga0316582_0109762
302 Ga0316582_0133150
303 Ga0316584_0006316
304 Ga0316584_0111861
305 Ga0316584_0141216
306 Ga0395900_0106443
307 Ga0395898_0491111
308 Ga0436364_0531667
309 Ga0436364_0594181
310 Ga0436364_0813724
311 Ga0395901_0163167
312 Ga0400484_22725
313 Ga0400485_18934
314 Ga0436365_1418795
315 Ga0436361_1201066
316 Ga0450898_009137
317 Ga0451577_0002708
318 Ga0466972_0087006
319 Ga0453684_0000368
320 Ga0453684_0004769
321 Ga0451576_0000191
322 Ga0451576_0018787
323 Ga0495618_0023430
324 Ga0495630_0001330
325 Ga0495667_0038410
326 Ga0495635_0227339
327 Ga0495657_0085649
328 Ga0495613_0005335
329 Ga0495624_0023016
330 Ga0495674_0020243
331 Ga0495684_0004841
332 Ga0495684_0005249
333 Ga0495684_0063315
334 Ga0496105_0102924
335 Ga0501033_0058834
336 Ga0501034_0001529
337 Ga0501034_0002285
338 Ga0501034_0002506
339 Ga0501034_0006574
340 Ga0501034_0013148
341 Ga0501034_0378102
342 Ga0501036_0027856
343 Ga0501036_0195439
344 Ga0501036_0365686
345 Ga0501037_0022120
346 Ga0501038_0001448
347 Ga0501040_0020142
348 Ga0501042_0053154
349 Ga0501043_0209600
350 Ga0501046_0008079
351 Ga0501046_0103076
352 Ga0501046_0110770
353 Ga0501047_0005028
354 Ga0501047_0029542
355 Ga0501047_0039880
356 Ga0501047_0070414
357 Ga0501048_0259591
358 Ga0501069_0009013
359 Ga0501070_0002468
360 Ga0501070_0013894
361 Ga0501072_0040579
362 Ga0501072_0101323
363 Ga0501074_0063625
364 Ga0501075_0083689
365 Ga0501076_0027556
366 Ga0501076_0039956
367 Ga0501079_0023031
368 Ga0501079_0221719
369 Ga0501080_0036514
370 Ga0501080_0055770
371 Ga0501081_0077203
372 Ga0501044_0001001
373 Ga0501044_0004954
374 Ga0501044_0253163
375 Ga0501045_0006504
376 Ga0501045_0129201
377 nmdc:mga09592_59631_c1
378 nmdc:mga0qj67_52358_c1
379 nmdc:mga06r32_54949_c1
380 nmdc:mga06r32_67976_c1
381 nmdc:mga0n895_38376_c1
382 nmdc:mga0a205_6846_c1
383 Ga0501084_0159578
384 Ga0590074_000849
385 Ga0590075_002650
386 Ga0590077_009514
387 Ga0501082_0207924
388 Ga0530510_0100827
389 2688069540
390 2688391338

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01262

AlaDh_PNT_C

Alanine dehydrogenase/PNT, C-terminal domain

114

326

0.99

PF05222

AlaDh_PNT_N

Alanine dehydrogenase/PNT, N-terminal domain

1

110

0.98

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

143

205

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2eez-assembly1.cif.gz_F crystal structure of alanine dehydrogenase from themus thermophilus 0.9927 1 367
2vhx-assembly1.cif.gz_A crystal structure of the ternary complex of l-alanine dehydrogenase from mycobacterium tuberculosis with nad+ and pyruvate 0.9872 1 370
8hye-assembly1.cif.gz_B-2 structure of amino acid dehydrogenase-2752 with ligand 0.9872 1 370
2vhx-assembly1.cif.gz_C crystal structure of the ternary complex of l-alanine dehydrogenase from mycobacterium tuberculosis with nad+ and pyruvate 0.9872 1 368
2vhx-assembly1.cif.gz_D crystal structure of the ternary complex of l-alanine dehydrogenase from mycobacterium tuberculosis with nad+ and pyruvate 0.9856 1 368
ID Description Score Start End Superfamily
2vhxC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.992 129 304 3.40.50.720
af_Q2FYJ2_1_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9891 1 122 3.40.50.720
2eezG01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9883 1 366 3.40.50.720
af_P9WQB1_2_113_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9878 3 111 3.40.50.720
2vhxC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9863 129 304 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A4U3BPJ1-F1-model_v4 deleted 0.9993 129 272
AF-A0A4U2ML33-F1-model_v4 Alanine dehydrogenase 0.9988 127 249 GO:0000286
GO:0005886
GO:0006524
AF-A0A352CBD0-F1-model_v4 Alanine dehydrogenase 0.9987 144 236 GO:0000286
GO:0005886
GO:0006524
AF-A0A382WUH1-F1-model_v4 Alanine dehydrogenase/pyridine nucleotide transhydrogenase N-terminal domain-containing protein 0.9977 1 96 GO:0000286
GO:0005886
GO:0006524
AF-A0A7W0N1G0-F1-model_v4 Alanine dehydrogenase 0.9976 1 85 GO:0000286
GO:0005886
GO:0006524

Map