|
Taxon Oid |
3300049585
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA |
| Genome Name Sample Name |
Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300049585 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.25 |
| Img Submission Id |
258862 |
|
Gold Analysis Project Id
|
Ga0501069
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0587956
|
|
Gold Study Id
|
Gs0154350
|
| Add Date |
12/04/2021 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
01/24/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
[email protected] |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Adina Howe |
| Contact Email |
[email protected] |
| Contact Name |
Adina Howe |
| Award Doi |
10.46936/10.25585/60000015 |
| Funding Program |
BRC-CABBI |
| Funding Year |
2021 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
23.000000 |
| Geographic Location |
USA: Reddick, Florida |
| Habitat |
Rhizosphere soil |
| Isolation |
Oilcane rhizosphere soil |
| Isolation Country |
8855 |
| Latitude |
29.4079 |
| Longitude |
-82.18 |
| Sample Collection Date |
2020/8/6 |
| Host Name |
Saccharum |
| Genome Size Assembled |
1041059329 |
| Gene Count Assembled |
1797312 |