|
Taxon Oid |
3300032168
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Rhizosphere microbial communities from salt marsh grasses in Alabama, United States |
| Genome Name Sample Name |
Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300032168 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Rhizosphere microbial communities from salt marsh grasses in Alabama, United States |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.16.6 |
| Img Submission Id |
204564 |
|
Gold Analysis Project Id
|
Ga0316593
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0344178
|
|
Gold Study Id
|
Gs0135940
|
| Add Date |
12/12/2018 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.1.2 |
| Has Coverage |
True |
| Public Release Date |
12/13/2018 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Behzad Mortazavi; Olivia Mason |
| Contact Email |
[email protected] |
| Contact Name |
Olivia Mason |
| Award Doi |
10.46936/10.25585/60000972 |
| Funding Program |
CSP |
| Funding Year |
2018 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA535873 |
| Ncbi Biosample Accession |
SAMN11510508 |
| Sequencing Method |
Illumina NovaSeq |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Depth In Meters |
0.050000 to 0.070000 |
| Elevation In Meters |
1.000000 |
| Geographic Location |
USA: Alabama |
| Habitat |
rhizosphere |
| Isolation |
rhizosphere of the salt marsh grasses |
| Isolation Country |
8855 |
| Latitude |
30.2619 |
| Longitude |
-88.2383 |
| Sample Collection Date |
2016/5/17 |
| Host Name |
Sporobolus alterniflorus |
| Genome Size Assembled |
742969650 |
| Gene Count Assembled |
1656484 |