F387505

General Info

Members Datasets Scaffolds Average Seq Length
286 164 572 297

Family's Representative Sequence

Representative Sequence 3300031901|Ga0307406_10003184|Ga0307406_100031841
Length 337
Sequence MIAYIDEFKHRYGVEPICRVLPIAPSTYYQARRRSSSARAVRDAKLKAEIARVHAEHFGVYGARKVWRQLHREQITVARCTVERLLRELGLEGIRRGKTRRTTTPDAAAARPADLVARDFSATRPNQLWVADLTYVATWSGFVYVAFVIDAFSRFIVGWQASRSLRTDLALDALEMAIWRRQGQLEGLVHHSDRGSQYLSIRYTERLAEAGAVTSVGSRGDSYDNALAETIIGLYKTELIRRRGPWKGIDQVEYATLEWVDWFTHRRLLEGADRPPPAGRVRGRIQERRGSQLPCWTQATESPVNPGRFSGGRVRGRGLGRPRWCGGRHSAGGCRRC

Samples

Sample ID Description Type Environment
1 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
13 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
45 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
46 3300028036 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300031018 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
56 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
57 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
58 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
59 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
60 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
61 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
62 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
65 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
66 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
67 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
68 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
69 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
70 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
71 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
72 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
73 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
74 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
75 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
76 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
77 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
78 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
79 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
82 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
89 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
90 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
91 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
92 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
93 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
94 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
95 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
96 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
97 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
98 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
99 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
100 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
101 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
102 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
103 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
104 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
105 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
106 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
107 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
108 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
109 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
110 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
111 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
112 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
113 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
114 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
115 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
116 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
117 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
118 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
119 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
120 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
121 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
122 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
123 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
124 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
125 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
126 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
127 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
128 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
129 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
130 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
131 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
132 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
133 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
134 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
135 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
136 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
137 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
138 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
139 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
140 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
141 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
142 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
143 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
147 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
148 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
149 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
150 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
151 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
152 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
153 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
154 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
155 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
156 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
157 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
158 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
159 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
160 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
161 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
162 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
163 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
164 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.6
Metatranscriptomes 0.7
Isolates 0.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.8
Nodule 0.35
Rhizoplane 3.15
Rhizosphere 92.31
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307406_10003184 3300031901 Bacteria 8934
2 rootH1_10164835 3300003323 Bacteria 2404
3 rootH1_10223024 3300003323 Bacteria 2482
4 rootH1_10228791 3300003323 Bacteria 1634
5 JGI25407J50210_10020505 3300003373 Bacteria 1719
6 JGI25407J50210_10021787 3300003373 Bacteria 1666
7 JGI25407J50210_10026818 3300003373 Bacteria 1493
8 JGI25407J50210_10030741 3300003373 Bacteria 1391
9 JGI25407J50210_10033254 3300003373 Bacteria 1332
10 JGI25407J50210_10043547 3300003373 Bacteria 1147
11 Ga0070668_100068229 3300005347 Bacteria 2764
12 Ga0070669_100420281 3300005353 Bacteria 1097
13 Ga0070674_100088360 3300005356 Bacteria 2230
14 Ga0070662_100192758 3300005457 Bacteria 1613
15 Ga0070707_100333328 3300005468 Bacteria 1474
16 Ga0070699_100001527 3300005518 Bacteria 21162
17 Ga0068857_100038080 3300005577 Bacteria 4259
18 Ga0068856_100441840 3300005614 Bacteria 1321
19 Ga0068861_100098299 3300005719 Bacteria 2323
20 Ga0068861_100173775 3300005719 Bacteria 1787
21 Ga0068861_100229385 3300005719 Bacteria 1574
22 Ga0081538_10003239 3300005981 Bacteria 15473
23 Ga0081538_10007141 3300005981 Bacteria 9699
24 Ga0081538_10007267 3300005981 Bacteria 9602
25 Ga0081538_10013035 3300005981 Bacteria 6615
26 Ga0081538_10017475 3300005981 Bacteria 5442
27 Ga0081538_10036360 3300005981 Bacteria 3215
28 Ga0081538_10036826 3300005981 Bacteria 3185
29 Ga0081538_10039062 3300005981 Bacteria 3050
30 Ga0081538_10081162 3300005981 Bacteria 1726
31 Ga0081538_10094380 3300005981 Bacteria 1532
32 Ga0081538_10098999 3300005981 Bacteria 1475
33 Ga0081538_10101062 3300005981 Bacteria 1452
34 Ga0081538_10106871 3300005981 Bacteria 1388
35 Ga0081538_10113559 3300005981 Bacteria 1322
36 Ga0081539_10042318 3300005985 Bacteria 2655
37 Ga0075363_100063505 3300006048 Bacteria 1993
38 Ga0075364_10095690 3300006051 Bacteria 1974
39 Ga0097621_100180193 3300006237 Bacteria 1825
40 Ga0075370_10129651 3300006353 Bacteria 1471
41 Ga0075434_100051227 3300006871 Bacteria 4102
42 Ga0105240_10302977 3300009093 Bacteria 1828
43 Ga0111539_10076578 3300009094 Bacteria 3939
44 Ga0105247_10170087 3300009101 Bacteria 1448
45 Ga0114129_10117729 3300009147 Bacteria 3660
46 Ga0105249_10233740 3300009553 Bacteria 1814
47 Ga0105249_10346437 3300009553 Bacteria 1504
48 Ga0105246_10212644 3300011119 Bacteria 1510
49 Ga0157370_10097808 3300013104 Bacteria 2753
50 Ga0157374_10000169 3300013296 Bacteria 60624
51 Ga0157378_10298519 3300013297 Bacteria 1558
52 Ga0163162_10451196 3300013306 Bacteria 1418
53 Ga0163162_10603286 3300013306 Bacteria 1224
54 Ga0157372_10129278 3300013307 Bacteria 2905
55 Ga0157379_10280025 3300014968 Bacteria 1517
56 Ga0163161_10274206 3300017792 Bacteria 1321
57 Ga0209672_109865 3300025228 Bacteria 1320
58 Ga0207710_10107334 3300025900 Bacteria 1323
59 Ga0207646_10303843 3300025922 Bacteria 1441
60 Ga0207706_10035090 3300025933 Bacteria 4461
61 Ga0207706_10101063 3300025933 Bacteria 2537
62 Ga0207669_10263936 3300025937 Bacteria 1289
63 Ga0207669_10377159 3300025937 Bacteria 1104
64 Ga0207667_10396338 3300025949 Bacteria 1405
65 Ga0207667_10541680 3300025949 Bacteria 1178
66 Ga0207712_10279145 3300025961 Bacteria 1363
67 Ga0207668_10050638 3300025972 Bacteria 2864
68 Ga0207668_10304672 3300025972 Bacteria 1316
69 Ga0207702_10079123 3300026078 Bacteria 2848
70 Ga0207674_10403442 3300026116 Bacteria 1321
71 Ga0207675_100086856 3300026118 Bacteria 2937
72 Ga0207675_100268872 3300026118 Bacteria 1654
73 Ga0207428_10257584 3300027907 Bacteria 1300
74 Ga0265357_1003772 3300028023 Bacteria 1331
75 Ga0265355_1002367 3300028036 Bacteria 1315
76 Ga0268264_10569487 3300028381 Bacteria 1113
77 Ga0265338_10127076 3300028800 Bacteria 2021
78 Ga0265770_1010653 3300030878 Bacteria 1338
79 Ga0265773_1000453 3300031018 Bacteria 1662
80 Ga0265329_10044979 3300031242 Bacteria 1411
81 Ga0265331_10079929 3300031250 Bacteria 1521
82 Ga0265327_10008386 3300031251 Bacteria 7707
83 Ga0265316_10119687 3300031344 Bacteria 1989
84 Ga0307513_10308037 3300031456 Bacteria 1347
85 Ga0307408_100039882 3300031548 Bacteria 3322
86 Ga0307408_100053800 3300031548 Bacteria 2909
87 Ga0307408_100117222 3300031548 Bacteria 2056
88 Ga0307408_100170720 3300031548 Bacteria 1736
89 Ga0307408_100344228 3300031548 Bacteria 1263
90 Ga0307408_100526326 3300031548 Bacteria 1039
91 Ga0307405_10020105 3300031731 Bacteria 3724
92 Ga0307405_10111038 3300031731 Bacteria 1857
93 Ga0307405_10149764 3300031731 Bacteria 1639
94 Ga0307405_10188744 3300031731 Bacteria 1486
95 Ga0307405_10281226 3300031731 Bacteria 1252
96 Ga0307413_10112651 3300031824 Bacteria 1824
97 Ga0307413_10182891 3300031824 Bacteria 1496
98 Ga0307413_10281759 3300031824 Bacteria 1250
99 Ga0307413_10318684 3300031824 Bacteria 1187
100 Ga0307410_10136067 3300031852 Bacteria 1811
101 Ga0307410_10158035 3300031852 Bacteria 1695
102 Ga0307410_10166132 3300031852 Bacteria 1658
103 Ga0307410_10207768 3300031852 Bacteria 1498
104 Ga0307410_10233415 3300031852 Bacteria 1422
105 Ga0307410_10433823 3300031852 Bacteria 1068
106 Ga0307410_10438150 3300031852 Bacteria 1063
107 Ga0307406_10135981 3300031901 Bacteria 1732
108 Ga0307406_10364179 3300031901 Bacteria 1134
109 Ga0307407_10005139 3300031903 Bacteria 5644
110 Ga0307407_10094260 3300031903 Bacteria 1842
111 Ga0307407_10122256 3300031903 Bacteria 1652
112 Ga0307407_10164975 3300031903 Bacteria 1453
113 Ga0307407_10321828 3300031903 Bacteria 1085
114 Ga0307412_10029714 3300031911 Bacteria 3432
115 Ga0307412_10184983 3300031911 Bacteria 1570
116 Ga0307409_100006732 3300031995 Bacteria 6796
117 Ga0307409_100084126 3300031995 Bacteria 2582
118 Ga0307409_100166105 3300031995 Bacteria 1937
119 Ga0307409_100192767 3300031995 Bacteria 1815
120 Ga0307409_100297232 3300031995 Bacteria 1500
121 Ga0307409_100302075 3300031995 Bacteria 1489
122 Ga0307416_100080688 3300032002 Bacteria 2747
123 Ga0307416_100104273 3300032002 Bacteria 2478
124 Ga0307416_100119020 3300032002 Bacteria 2348
125 Ga0307416_100172297 3300032002 Bacteria 2016
126 Ga0307416_100262422 3300032002 Bacteria 1689
127 Ga0307416_100276164 3300032002 Bacteria 1653
128 Ga0307416_100329039 3300032002 Bacteria 1534
129 Ga0307416_100385368 3300032002 Bacteria 1433
130 Ga0307416_100385384 3300032002 Bacteria 1433
131 Ga0307416_100402919 3300032002 Bacteria 1406
132 Ga0307416_100420619 3300032002 Bacteria 1380
133 Ga0307414_10025571 3300032004 Bacteria 3784
134 Ga0307414_10513841 3300032004 Bacteria 1062
135 Ga0307411_10004119 3300032005 Bacteria 6898
136 Ga0307411_10041228 3300032005 Bacteria 2935
137 Ga0307411_10220688 3300032005 Bacteria 1470
138 Ga0307411_10260843 3300032005 Bacteria 1368
139 Ga0307411_10402008 3300032005 Bacteria 1132
140 Ga0307415_100018434 3300032126 Bacteria 4215
141 Ga0307415_100027530 3300032126 Bacteria 3602
142 Ga0307415_100162703 3300032126 Bacteria 1731
143 Ga0307415_100246673 3300032126 Bacteria 1448
144 Ga0307415_100248149 3300032126 Bacteria 1444
145 Ga0307415_100367062 3300032126 Bacteria 1217
146 Ga0373923_0097888 3300035111 Bacteria 1290
147 Ga0373936_0087418 3300035113 Bacteria 1303
148 Ga0373945_0075736 3300035116 Bacteria 1281
149 Ga0373953_0089361 3300035117 Bacteria 1287
150 Ga0373954_0098177 3300035118 Bacteria 1411
151 Ga0373956_0084455 3300035119 Bacteria 1459
152 Ga0373957_0061009 3300035120 Bacteria 1460
153 Ga0373955_0019808 3300035172 Bacteria 3369
154 Ga0373924_0091083 3300035410 Bacteria 1304
155 Ga0373935_0278369 3300035692 Bacteria 1177
156 Ga0373927_0198621 3300035695 Bacteria 1316
157 Ga0373933_0176922 3300035724 Bacteria 1359
158 Ga0373933_0304743 3300035724 Bacteria 1031
159 Ga0373947_0040407 3300035725 Bacteria 2778
160 Ga0373937_0184151 3300036401 Bacteria 1961
161 Ga0373937_0603981 3300036401 Bacteria 1041
162 Ga0316582_0195025 3300036647 Bacteria 1380
163 Ga0373925_0267546 3300037068 Bacteria 1374
164 Ga0373925_0363041 3300037068 Bacteria 1177
165 Ga0395899_0070142 3300037312 Bacteria 2565
166 Ga0395899_0158142 3300037312 Bacteria 1602
167 Ga0395899_0183476 3300037312 Bacteria 1467
168 Ga0395900_0024796 3300037418 Bacteria 6139
169 Ga0395900_0228751 3300037418 Bacteria 1871
170 Ga0395900_0291246 3300037418 Bacteria 1621
171 Ga0395900_0536198 3300037418 Bacteria 1116
172 Ga0395898_0009503 3300037466 Bacteria 10210
173 Ga0395898_0084357 3300037466 Bacteria 3062
174 Ga0395898_0262558 3300037466 Bacteria 1647
175 Ga0395898_0339926 3300037466 Bacteria 1431
176 Ga0395898_0354768 3300037466 Bacteria 1398
177 Ga0395898_0394463 3300037466 Bacteria 1319
178 Ga0395898_0397830 3300037466 Bacteria 1313
179 Ga0395905_0081893 3300037471 Bacteria 3024
180 Ga0395905_0273102 3300037471 Bacteria 1576
181 Ga0395905_0424518 3300037471 Bacteria 1226
182 Ga0395905_0722503 3300037471 Bacteria 898
183 Ga0395901_0076344 3300038443 Bacteria 3495
184 Ga0395901_0257871 3300038443 Bacteria 1815
185 Ga0395901_0441211 3300038443 Bacteria 1332
186 Ga0395901_0508595 3300038443 Bacteria 1225
187 Ga0395901_0532228 3300038443 Bacteria 1193
188 Ga0436361_1223966 3300039447 Bacteria 1773
189 Ga0436362_1176081 3300039453 Bacteria 2294
190 Ga0439443_001948 3300042003 Bacteria 2394
191 Ga0439448_0027081 3300042005 Bacteria 1805
192 Ga0439454_005152 3300042011 Bacteria 1547
193 Ga0439455_0012764 3300042012 Bacteria 1892
194 Ga0439455_0032325 3300042012 Bacteria 1307
195 Ga0439463_013866 3300042016 Bacteria 1985
196 Ga0439463_044696 3300042016 Bacteria 1128
197 Ga0450914_000096 3300042118 Bacteria 2686
198 Ga0450917_002674 3300042120 Bacteria 1278
199 Ga0450923_017960 3300042125 Bacteria 1348
200 Ga0450900_001230 3300042136 Bacteria 2434
201 Ga0450902_002078 3300042137 Bacteria 2811
202 Ga0450902_005897 3300042137 Bacteria 1865
203 Ga0450904_003971 3300042139 Bacteria 1562
204 Ga0439458_0024544 3300042157 Bacteria 1410
205 Ga0439458_0029250 3300042157 Bacteria 1306
206 Ga0450908_015337 3300042184 Bacteria 1373
207 Ga0439435_0038428 3300042436 Bacteria 1330
208 Ga0439444_0000359 3300042437 Bacteria 4872
209 Ga0439444_0001199 3300042437 Bacteria 3278
210 Ga0439444_0009786 3300042437 Bacteria 1518
211 Ga0439460_0052015 3300042461 Bacteria 1230
212 Ga0450916_003921 3300042530 Bacteria 1657
213 Ga0439440_0024480 3300042993 Bacteria 1384
214 Ga0439440_0042966 3300042993 Bacteria 1107
215 Ga0466966_0000977 3300044684 Bacteria 18327
216 Ga0466961_0266306 3300044693 Bacteria 1050
217 Ga0466963_0024021 3300044694 Bacteria 3877
218 Ga0466963_0061606 3300044694 Bacteria 2508
219 Ga0466968_0019400 3300044735 Bacteria 2738
220 Ga0495592_0135250 3300046454 Bacteria 1720
221 Ga0495592_0139120 3300046454 Bacteria 1690
222 Ga0495651_0325790 3300046462 Bacteria 1022
223 Ga0495653_0089151 3300046463 Bacteria 2261
224 Ga0495662_0204877 3300046476 Bacteria 972
225 Ga0495584_0188288 3300046491 Bacteria 1049
226 Ga0495608_0106557 3300046511 Bacteria 1804
227 Ga0495608_0280880 3300046511 Bacteria 1033
228 Ga0495618_0128691 3300046514 Bacteria 1620
229 Ga0495620_0075585 3300046515 Bacteria 1370
230 Ga0495631_0046533 3300046518 Bacteria 1906
231 Ga0495652_0296946 3300046529 Bacteria 1176
232 Ga0495640_0143637 3300046533 Bacteria 1537
233 Ga0495640_0219810 3300046533 Bacteria 1198
234 Ga0495587_0123165 3300046536 Bacteria 1484
235 Ga0495667_0190940 3300046559 Bacteria 1312
236 Ga0495635_0268434 3300046663 Bacteria 1148
237 Ga0495657_0072219 3300046675 Bacteria 2251
238 Ga0495657_0247744 3300046675 Bacteria 1073
239 Ga0495623_0241328 3300046679 Bacteria 1020
240 Ga0495658_0152785 3300046683 Bacteria 1419
241 Ga0495613_0340129 3300046689 Bacteria 1032
242 Ga0495613_0387798 3300046689 Bacteria 954
243 Ga0495604_0124083 3300047317 Bacteria 1865
244 Ga0495604_0212896 3300047317 Bacteria 1334
245 Ga0495674_0262257 3300047319 Bacteria 1419
246 Ga0495674_0295244 3300047319 Bacteria 1324
247 Ga0495675_0168208 3300047444 Bacteria 1347
248 Ga0495675_0237318 3300047444 Bacteria 1098
249 Ga0495684_0223614 3300047471 Bacteria 1379
250 Ga0495684_0260671 3300047471 Bacteria 1257
251 Ga0495593_0211828 3300047673 Bacteria 973
252 Ga0495602_0086568 3300048088 Bacteria 2615
253 Ga0495602_0424451 3300048088 Bacteria 943
254 Ga0496101_0231774 3300048904 Bacteria 1435
255 Ga0496104_0340569 3300048907 Bacteria 1412
256 Ga0496105_0268067 3300048908 Bacteria 1379
257 Ga0496106_0250621 3300048909 Bacteria 1415
258 Ga0496107_0175133 3300048910 Bacteria 1592
259 Ga0496107_0667106 3300048910 Bacteria 766
260 Ga0496108_0280186 3300048911 Bacteria 1451
261 Ga0496114_0071310 3300048917 Bacteria 2919
262 Ga0496114_0499178 3300048917 Bacteria 1076
263 Ga0501034_0349995 3300049571 Bacteria 1406
264 Ga0501042_0000870 3300049578 Bacteria 16867
265 Ga0501047_0186396 3300049581 Bacteria 1940
266 Ga0501223_045864 3300049663 Bacteria 848
267 Ga0501259_051645 3300049688 Bacteria 836
268 nmdc:mga03n38_103977_c1 3300050490 Bacteria 1374
269 nmdc:mga06z11_231350_c1 3300050494 Bacteria 1083
270 nmdc:mga07m45_213142_c1 3300050496 Bacteria 1124
271 nmdc:mga05p37_171593_c1 3300050507 Bacteria 2645
272 nmdc:mga05p37_95770_c1 3300050507 Bacteria 3657
273 nmdc:mga09592_441848_c1 3300050508 Bacteria 1122
274 nmdc:mga08y16_251844_c1 3300050511 Bacteria 1825
275 nmdc:mga0a205_22417_c1 3300050515 Bacteria 5982
276 Ga0495601_0090915 3300053077 Bacteria 1964
277 Ga0495612_0074252 3300053078 Bacteria 1421
278 Ga0495595_0036918 3300053084 Bacteria 2219
279 Ga0495595_0118283 3300053084 Bacteria 1289
280 Ga0495619_0457458 3300053085 Bacteria 879
281 Ga0500646_0008640 3300053090 Bacteria 2607
282 Ga0590074_007063 3300059423 Bacteria 1865
283 Ga0590075_010225 3300059424 Bacteria 2257
284 Ga0466962_0010980 3300061719 Bacteria 4359
285 2585261670 2582581305 Bacteria 4895574
286 8002287237 8002285264 Bacteria 6717907
287 Ga0307406_10003184
288 rootH1_10164835
289 rootH1_10223024
290 rootH1_10228791
291 JGI25407J50210_10020505
292 JGI25407J50210_10021787
293 JGI25407J50210_10026818
294 JGI25407J50210_10030741
295 JGI25407J50210_10033254
296 JGI25407J50210_10043547
297 Ga0070668_100068229
298 Ga0070669_100420281
299 Ga0070674_100088360
300 Ga0070662_100192758
301 Ga0070707_100333328
302 Ga0070699_100001527
303 Ga0068857_100038080
304 Ga0068856_100441840
305 Ga0068861_100098299
306 Ga0068861_100173775
307 Ga0068861_100229385
308 Ga0081538_10003239
309 Ga0081538_10007141
310 Ga0081538_10007267
311 Ga0081538_10013035
312 Ga0081538_10017475
313 Ga0081538_10036360
314 Ga0081538_10036826
315 Ga0081538_10039062
316 Ga0081538_10081162
317 Ga0081538_10094380
318 Ga0081538_10098999
319 Ga0081538_10101062
320 Ga0081538_10106871
321 Ga0081538_10113559
322 Ga0081539_10042318
323 Ga0075363_100063505
324 Ga0075364_10095690
325 Ga0097621_100180193
326 Ga0075370_10129651
327 Ga0075434_100051227
328 Ga0105240_10302977
329 Ga0111539_10076578
330 Ga0105247_10170087
331 Ga0114129_10117729
332 Ga0105249_10233740
333 Ga0105249_10346437
334 Ga0105246_10212644
335 Ga0157370_10097808
336 Ga0157374_10000169
337 Ga0157378_10298519
338 Ga0163162_10451196
339 Ga0163162_10603286
340 Ga0157372_10129278
341 Ga0157379_10280025
342 Ga0163161_10274206
343 Ga0209672_109865
344 Ga0207710_10107334
345 Ga0207646_10303843
346 Ga0207706_10035090
347 Ga0207706_10101063
348 Ga0207669_10263936
349 Ga0207669_10377159
350 Ga0207667_10396338
351 Ga0207667_10541680
352 Ga0207712_10279145
353 Ga0207668_10050638
354 Ga0207668_10304672
355 Ga0207702_10079123
356 Ga0207674_10403442
357 Ga0207675_100086856
358 Ga0207675_100268872
359 Ga0207428_10257584
360 Ga0265357_1003772
361 Ga0265355_1002367
362 Ga0268264_10569487
363 Ga0265338_10127076
364 Ga0265770_1010653
365 Ga0265773_1000453
366 Ga0265329_10044979
367 Ga0265331_10079929
368 Ga0265327_10008386
369 Ga0265316_10119687
370 Ga0307513_10308037
371 Ga0307408_100039882
372 Ga0307408_100053800
373 Ga0307408_100117222
374 Ga0307408_100170720
375 Ga0307408_100344228
376 Ga0307408_100526326
377 Ga0307405_10020105
378 Ga0307405_10111038
379 Ga0307405_10149764
380 Ga0307405_10188744
381 Ga0307405_10281226
382 Ga0307413_10112651
383 Ga0307413_10182891
384 Ga0307413_10281759
385 Ga0307413_10318684
386 Ga0307410_10136067
387 Ga0307410_10158035
388 Ga0307410_10166132
389 Ga0307410_10207768
390 Ga0307410_10233415
391 Ga0307410_10433823
392 Ga0307410_10438150
393 Ga0307406_10135981
394 Ga0307406_10364179
395 Ga0307407_10005139
396 Ga0307407_10094260
397 Ga0307407_10122256
398 Ga0307407_10164975
399 Ga0307407_10321828
400 Ga0307412_10029714
401 Ga0307412_10184983
402 Ga0307409_100006732
403 Ga0307409_100084126
404 Ga0307409_100166105
405 Ga0307409_100192767
406 Ga0307409_100297232
407 Ga0307409_100302075
408 Ga0307416_100080688
409 Ga0307416_100104273
410 Ga0307416_100119020
411 Ga0307416_100172297
412 Ga0307416_100262422
413 Ga0307416_100276164
414 Ga0307416_100329039
415 Ga0307416_100385368
416 Ga0307416_100385384
417 Ga0307416_100402919
418 Ga0307416_100420619
419 Ga0307414_10025571
420 Ga0307414_10513841
421 Ga0307411_10004119
422 Ga0307411_10041228
423 Ga0307411_10220688
424 Ga0307411_10260843
425 Ga0307411_10402008
426 Ga0307415_100018434
427 Ga0307415_100027530
428 Ga0307415_100162703
429 Ga0307415_100246673
430 Ga0307415_100248149
431 Ga0307415_100367062
432 Ga0373923_0097888
433 Ga0373936_0087418
434 Ga0373945_0075736
435 Ga0373953_0089361
436 Ga0373954_0098177
437 Ga0373956_0084455
438 Ga0373957_0061009
439 Ga0373955_0019808
440 Ga0373924_0091083
441 Ga0373935_0278369
442 Ga0373927_0198621
443 Ga0373933_0176922
444 Ga0373933_0304743
445 Ga0373947_0040407
446 Ga0373937_0184151
447 Ga0373937_0603981
448 Ga0316582_0195025
449 Ga0373925_0267546
450 Ga0373925_0363041
451 Ga0395899_0070142
452 Ga0395899_0158142
453 Ga0395899_0183476
454 Ga0395900_0024796
455 Ga0395900_0228751
456 Ga0395900_0291246
457 Ga0395900_0536198
458 Ga0395898_0009503
459 Ga0395898_0084357
460 Ga0395898_0262558
461 Ga0395898_0339926
462 Ga0395898_0354768
463 Ga0395898_0394463
464 Ga0395898_0397830
465 Ga0395905_0081893
466 Ga0395905_0273102
467 Ga0395905_0424518
468 Ga0395905_0722503
469 Ga0395901_0076344
470 Ga0395901_0257871
471 Ga0395901_0441211
472 Ga0395901_0508595
473 Ga0395901_0532228
474 Ga0436361_1223966
475 Ga0436362_1176081
476 Ga0439443_001948
477 Ga0439448_0027081
478 Ga0439454_005152
479 Ga0439455_0012764
480 Ga0439455_0032325
481 Ga0439463_013866
482 Ga0439463_044696
483 Ga0450914_000096
484 Ga0450917_002674
485 Ga0450923_017960
486 Ga0450900_001230
487 Ga0450902_002078
488 Ga0450902_005897
489 Ga0450904_003971
490 Ga0439458_0024544
491 Ga0439458_0029250
492 Ga0450908_015337
493 Ga0439435_0038428
494 Ga0439444_0000359
495 Ga0439444_0001199
496 Ga0439444_0009786
497 Ga0439460_0052015
498 Ga0450916_003921
499 Ga0439440_0024480
500 Ga0439440_0042966
501 Ga0466966_0000977
502 Ga0466961_0266306
503 Ga0466963_0024021
504 Ga0466963_0061606
505 Ga0466968_0019400
506 Ga0495592_0135250
507 Ga0495592_0139120
508 Ga0495651_0325790
509 Ga0495653_0089151
510 Ga0495662_0204877
511 Ga0495584_0188288
512 Ga0495608_0106557
513 Ga0495608_0280880
514 Ga0495618_0128691
515 Ga0495620_0075585
516 Ga0495631_0046533
517 Ga0495652_0296946
518 Ga0495640_0143637
519 Ga0495640_0219810
520 Ga0495587_0123165
521 Ga0495667_0190940
522 Ga0495635_0268434
523 Ga0495657_0072219
524 Ga0495657_0247744
525 Ga0495623_0241328
526 Ga0495658_0152785
527 Ga0495613_0340129
528 Ga0495613_0387798
529 Ga0495604_0124083
530 Ga0495604_0212896
531 Ga0495674_0262257
532 Ga0495674_0295244
533 Ga0495675_0168208
534 Ga0495675_0237318
535 Ga0495684_0223614
536 Ga0495684_0260671
537 Ga0495593_0211828
538 Ga0495602_0086568
539 Ga0495602_0424451
540 Ga0496101_0231774
541 Ga0496104_0340569
542 Ga0496105_0268067
543 Ga0496106_0250621
544 Ga0496107_0175133
545 Ga0496107_0667106
546 Ga0496108_0280186
547 Ga0496114_0071310
548 Ga0496114_0499178
549 Ga0501034_0349995
550 Ga0501042_0000870
551 Ga0501047_0186396
552 Ga0501223_045864
553 Ga0501259_051645
554 nmdc:mga03n38_103977_c1
555 nmdc:mga06z11_231350_c1
556 nmdc:mga07m45_213142_c1
557 nmdc:mga05p37_171593_c1
558 nmdc:mga05p37_95770_c1
559 nmdc:mga09592_441848_c1
560 nmdc:mga08y16_251844_c1
561 nmdc:mga0a205_22417_c1
562 Ga0495601_0090915
563 Ga0495612_0074252
564 Ga0495595_0036918
565 Ga0495595_0118283
566 Ga0495619_0457458
567 Ga0500646_0008640
568 Ga0590074_007063
569 Ga0590075_010225
570 Ga0466962_0010980
571 2585261670
572 8002287237

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00665

rve

Integrase core domain

122

222

0.95

PF13276

HTH_21

HTH-like domain

41

99

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
8cta-assembly3.cif.gz_I minimal 2:2 ternary complex between bi-224436 bound hiv-1 integrase catalytic core domain dimer and carboxy terminal domains 0.7704 80 221
4ahu-assembly1.cif.gz_A parallel screening of a low molecular weight compound library: do differences in methodology affect hit identification 0.7638 78 221
6qbv-assembly1.cif.gz_B structure of the htlv-2 integrase catalytic core domain in complex with magnesium (dimeric form) 0.7602 75 221
2b4j-assembly1.cif.gz_B structural basis for the recognition between hiv-1 integrase and ledgf/p75 0.755 80 222
3vq9-assembly2.cif.gz_C-2 hiv-1 in core domain in complex with 6-fluoro-1,3-benzothiazol-2-amine 0.7548 75 221
ID Description Score Start End Superfamily
af_P0CF80_124_283_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.905 75 215 3.30.420.10
af_Q47718_102_174_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9013 73 141 3.30.420.10
af_P9WKH9_102_261_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8731 76 232 3.30.420.10
af_P9WKH9_102_261_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.853 76 232 3.30.420.10
af_Q47718_102_174_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8434 73 141 3.30.420.10
ID Description Score Start End GO Terms
AF-V6EX28-F1-model_v4 Integrase catalytic domain-containing protein 0.921 74 140 GO:0003676
GO:0015074
AF-A0A4R5IIF9-F1-model_v4 IS3 family transposase 0.9207 64 216 GO:0003676
GO:0015074
AF-A0A5S3ZBB7-F1-model_v4 Integrase catalytic domain-containing protein 0.9054 76 141 GO:0003676
GO:0015074
AF-A0A554V7M3-F1-model_v4 DDE-type integrase/transposase/recombinase 0.9047 75 221 GO:0003676
GO:0015074
AF-A0A4R5IIF9-F1-model_v4 IS3 family transposase 0.9036 64 216 GO:0003676
GO:0015074

Map