|
Taxon Oid |
3300049663
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA |
| Genome Name Sample Name |
Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300049663 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.25 |
| Img Submission Id |
259114 |
|
Gold Analysis Project Id
|
Ga0501223
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0588110
|
|
Gold Study Id
|
Gs0145674
|
| Add Date |
12/10/2021 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
12/07/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Esther Singer |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Esther Singer; Jenny Mortimer |
| Contact Email |
[email protected] |
| Contact Name |
Esther Singer |
| Award Doi |
10.46936/10.25585/60001211 |
| Funding Program |
Director's Science |
| Funding Year |
2020 |
| Is Published |
False |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Depth In Meters |
0.000000 to 0.050000 |
| Elevation In Meters |
13.000000 |
| Geographic Location |
USA: Berkeley, California |
| Habitat |
Panicgrass rhizosphere |
| Isolation |
rhizosphere from a plant grown in agriculturial soil in growth chamber |
| Isolation Country |
8855 |
| Latitude |
37.8517 |
| Longitude |
-122.294 |
| Sample Collection Date |
2021/2/23 |
| Sample Collection Temperature |
28 C |
| Host Name |
Panicum hallii var. hallii |
| Genome Size Assembled |
250628178 |
| Gene Count Assembled |
541236 |