F368724

General Info

Members Datasets Scaffolds Average Seq Length
259 219 202 362

Family's Representative Sequence

Representative Sequence 3300006195|Ga0075366_10015315|Ga0075366_100153153
Length 412
Sequence MSAVPRSETSSPLGCSIVSTTAEHDTGMSTLPPLFVTRPELPPLEEFLPYLQEIWDTRILSNNGPFHQKLEQALCEHLGVPHISLFTNATMALVTALQSLRITGEVITTPYSFVATAHSLMWNGIKPRIEAAITPQTTAIMPIHCYGTPCDVEAIQRIADDYNLKIIYDAAHAFGVRRSEAGRMRSVLNHGDLSVLSFHATKVFNTFEGGAIISPDARTKQRIDHLKNFGFVNETTVVATGINGKMSEFNAALGLLQLRHVDRAIERRGEIEAAYRRLLAGVPGLHMLELPADTLRNHSYFPILIGPGFGAPRDAVYEALKAQRILARRYFYPLISDFPMYRGLPSAAPANLPVARTVADQVLCLPIYPSMTDVDIDRVVSAVLAAAAPGRVAPALRLAAPVGPALPVAAAL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
3 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
4 2516653085 Rhizobium leguminosarum bv. phaseoli 4292 Isolate Nodule
5 2718217927 Rhizobium sp. N324 Isolate Nodule
6 2718217997 Rhizobium phaseoli sv. phaseoli R723 Isolate Nodule
7 2718218199 Rhizobium phaseoli sv. phaseoli N261 Isolate Nodule
8 2718218232 Rhizobium phaseoli sv. phaseoli N161 Isolate Nodule
9 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
10 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
11 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
12 2718218423 Rhizobium sp. N941 Isolate Nodule
13 2721755556 Rhizobium phaseoli sv. phaseoli N931 Isolate Nodule
14 2721755684 Rhizobium phaseoli sv. phaseoli N841 Isolate Nodule
15 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
16 2721755809 Rhizobium sp. N541 Isolate Nodule
17 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
18 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
19 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
20 2728369352 Rhizobium phaseoli sv. phaseoli N831 Isolate Nodule
21 2738541277 Variovorax sp. GV051 Isolate Unclassified
22 2738543019 Variovorax sp. GV040 Isolate Unclassified
23 2791355265 Rhizobium sp. H4 Isolate Nodule
24 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
25 2838016132 Rhizobium phaseoli SEMIA 4071 Isolate Nodule
26 2838048938 Rhizobium pisi 27/80 Isolate Nodule
27 2838061910 Rhizobium phaseoli L15 Isolate Nodule
28 2838068647 Rhizobium esperanzae VC28 Isolate Nodule
29 2838668709 Rhizobium sophoriradicis SEMIA 403 Isolate Nodule
30 2838701080 Rhizobium aethiopicum SEMIA 428 Isolate Nodule
31 2842146304 Rhizobium sophoriradicis SEMIA 454 Isolate Nodule
32 2842192696 Rhizobium esperanzae SEMIA 468 Isolate Nodule
33 2842250916 Rhizobium etli SEMIA 484 Isolate Nodule
34 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
35 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
36 2842317721 Rhizobium etli SEMIA 4004 Isolate Nodule
37 2842422224 Rhizobium esperanzae SEMIA 4042 Isolate Nodule
38 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
39 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
40 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
41 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
42 2842462802 Rhizobium phaseoli SEMIA 4057 Isolate Nodule
43 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
44 2842489311 Rhizobium sophoriradicis SEMIA 4061 Isolate Nodule
45 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
46 2904483920 Paraburkholderia caledonica 575 Isolate Unclassified
47 2923634449 Enterobacter kobei SLBN-76 Isolate Rhizosphere
48 2933599457 Rhizobium phaseoli M3 Isolate Nodule
49 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
50 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
51 3300003567 Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_04_fullP_mix3_d1 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
52 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
53 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
54 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
55 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
56 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
57 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
58 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
59 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
60 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
61 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
62 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
63 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
64 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
65 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
66 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
67 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
68 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
69 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
70 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
71 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
72 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
73 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
74 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
75 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
76 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
77 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
78 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
79 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
80 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
81 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
82 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
83 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
89 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
91 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
92 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
93 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
99 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
113 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
115 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
117 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
118 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
119 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
120 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
121 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
122 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
123 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
124 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
125 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
126 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
127 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
128 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
129 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
130 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
131 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
132 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
133 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
134 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
135 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
136 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
137 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
138 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
139 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
140 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
141 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
142 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
143 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
144 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
145 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
146 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
147 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
148 3300044669 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2E Metagenome Unclassified
149 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
150 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
151 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
152 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
153 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
154 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
155 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
156 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
157 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
158 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
159 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
160 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
161 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
162 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
163 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
164 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
165 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
166 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
167 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
168 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
169 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
170 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
171 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
172 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
173 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
174 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
175 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
176 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
177 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
178 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
179 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
180 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
181 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
182 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
183 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
184 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
185 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
186 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
187 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
188 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
189 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
190 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
191 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
192 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
193 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
194 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
195 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
196 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
197 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
198 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
199 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
200 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
201 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
202 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
203 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
204 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
205 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
206 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
207 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
208 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
209 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
210 8005275841 Rhizobium sp. N4311 Isolate Nodule
211 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
212 8005395548 Rhizobium sp. R339 Isolate Nodule
213 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
214 8005497431 Rhizobium phaseoli CCGM8 Isolate Unclassified
215 8005619151 Rhizobium phaseoli CCGM2 Isolate Unclassified
216 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
217 8005668836 Rhizobium phaseoli CCGM9 Isolate Unclassified
218 8024501048 Rhizobium sp. H4 Isolate Nodule
219 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 76.45
Metatranscriptomes 1.54
Isolates 22.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.46
Nodule 20.08
Rhizoplane 1.16
Rhizosphere 44.4
Stem 0
Stem Tuber 0
Unclassified 13.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1159591 2162886007 Bacteria 16412
2 JGI25156J39149_1000532 3300002705 Bacteria 21936
3 JGI25165J46597_1000902 3300003214 Bacteria 20631
4 Ga0006554J51385_1039294 3300003567 Bacteria 1590
5 Ga0055533_1000119 3300003756 Bacteria 90106
6 Ga0055532_1000043 3300003758 Bacteria 195042
7 Ga0055527_1000026 3300003760 Bacteria 192398
8 Ga0055535_1000032 3300003761 Bacteria 195042
9 Ga0055542_1000049 3300003762 Bacteria 195042
10 Ga0055529_1000059 3300003763 Bacteria 195042
11 Ga0055524_1000025 3300003775 Bacteria 216427
12 Ga0055524_1031350 3300003775 Bacteria 1530
13 Ga0055528_1002119 3300003790 Bacteria 10953
14 Ga0055540_1017466 3300003792 Bacteria 2001
15 Ga0055531_10000007 3300003794 Bacteria 225289
16 Ga0058692_1000261 3300003856 Bacteria 28622
17 Ga0058692_1000518 3300003856 Bacteria 16961
18 Ga0065704_10000261 3300005289 Bacteria 53884
19 Ga0065704_10070514 3300005289 Bacteria 22023
20 Ga0070658_10033187 3300005327 Bacteria 4152
21 Ga0070680_100002038 3300005336 Bacteria 14909
22 Ga0070673_100001525 3300005364 Bacteria 13646
23 Ga0070673_100018391 3300005364 Bacteria 4990
24 Ga0070659_100066183 3300005366 Bacteria 2863
25 Ga0070659_100068812 3300005366 Bacteria 2809
26 Ga0068855_100050358 3300005563 Bacteria 4908
27 Ga0068855_100093922 3300005563 Unclassified 3459
28 Ga0075363_100132020 3300006048 Bacteria 1401
29 Ga0075362_10011786 3300006177 Bacteria 3452
30 Ga0075366_10001228 3300006195 Bacteria 12713
31 Ga0075366_10003098 3300006195 Bacteria 8689
32 Ga0075366_10006434 3300006195 Bacteria 6436
33 Ga0075366_10015315 3300006195 Bacteria 4391
34 Ga0075370_10007639 3300006353 Bacteria 5517
35 Ga0099826_10000005 3300006948 Bacteria 465206
36 Ga0105251_10000094 3300009011 Bacteria 85749
37 Ga0105240_10240393 3300009093 Bacteria 2099
38 Ga0105242_10001710 3300009176 Bacteria 17351
39 Ga0105237_10056227 3300009545 Bacteria 3939
40 Ga0105238_10111414 3300009551 Bacteria 2717
41 Ga0157370_10366268 3300013104 Bacteria 1328
42 Ga0157369_10074009 3300013105 Bacteria 3654
43 Ga0163162_10179282 3300013306 Bacteria 2245
44 Ga0163162_10193954 3300013306 Bacteria 2159
45 Ga0213872_10006116 3300021361 Bacteria 6088
46 Ga0213872_10007636 3300021361 Bacteria 5301
47 Ga0209674_100017 3300025226 Bacteria 689087
48 Ga0209672_100001 3300025228 Bacteria 2828210
49 Ga0209147_100022 3300025229 Bacteria 443906
50 Ga0209563_100692 3300025230 Bacteria 10636
51 Ga0209258_100033 3300025242 Bacteria 443845
52 Ga0207425_1009474 3300025245 Bacteria 2418
53 Ga0209148_1000046 3300025254 Bacteria 443881
54 Ga0209759_1000780 3300025256 Bacteria 26643
55 Ga0209759_1001717 3300025256 Bacteria 11316
56 Ga0209759_1016470 3300025256 Bacteria 1866
57 Ga0209129_1005276 3300025258 Bacteria 4654
58 Ga0209233_1000050 3300025261 Bacteria 450736
59 Ga0209565_1002809 3300025263 Bacteria 6025
60 Ga0209455_1000038 3300025272 Bacteria 443899
61 Ga0209673_1002354 3300025273 Bacteria 13319
62 Ga0209564_1016887 3300025295 Bacteria 2878
63 Ga0209050_1003662 3300025298 Bacteria 11100
64 Ga0209256_1000040 3300025299 Bacteria 366839
65 Ga0209051_1005658 3300025303 Bacteria 7228
66 Ga0209051_1011431 3300025303 Bacteria 4384
67 Ga0209257_1000021 3300025304 Bacteria 771986
68 Ga0209257_1025256 3300025304 Bacteria 2034
69 Ga0207713_1000257 3300025735 Bacteria 65404
70 Ga0207705_10015711 3300025909 Bacteria 5436
71 Ga0207695_10161871 3300025913 Bacteria 2169
72 Ga0207660_10002921 3300025917 Bacteria 11168
73 Ga0207681_10085982 3300025923 Bacteria 2233
74 Ga0207694_10097771 3300025924 Bacteria 2323
75 Ga0207686_10011308 3300025934 Bacteria 4883
76 Ga0207691_10025429 3300025940 Bacteria 5559
77 Ga0207667_10058008 3300025949 Unclassified 4062
78 Ga0207667_10080934 3300025949 Bacteria 3365
79 Ga0207651_10004275 3300025960 Bacteria 7167
80 Ga0207648_10278127 3300026089 Bacteria 1497
81 Ga0209371_1000001 3300027312 Bacteria 2771503
82 Ga0209371_1018085 3300027312 Bacteria 1805
83 Ga0209981_1002196 3300027378 Bacteria 2487
84 Ga0209282_1000003 3300027666 Bacteria 856377
85 Ga0209974_10019613 3300027876 Bacteria 2242
86 Ga0265336_10000014 3300028666 Bacteria 241247
87 Ga0307517_10093293 3300028786 Bacteria 2441
88 Ga0307515_10004747 3300028794 Bacteria 27845
89 Ga0307515_10029196 3300028794 Bacteria 9335
90 Ga0265338_10033754 3300028800 Bacteria 4960
91 Ga0265324_10000381 3300029957 Bacteria 32068
92 Ga0265324_10005039 3300029957 Bacteria 5794
93 Ga0268256_1000001 3300030500 Bacteria 2771065
94 Ga0268256_1020153 3300030500 Bacteria 1805
95 Ga0307512_10060584 3300030522 Bacteria 2924
96 Ga0265331_10006533 3300031250 Bacteria 6880
97 Ga0265327_10000559 3300031251 Bacteria 63553
98 Ga0265327_10012647 3300031251 Bacteria 5675
99 Ga0265316_10107483 3300031344 Bacteria 2115
100 Ga0307408_100116410 3300031548 Unclassified 2063
101 Ga0265314_10000756 3300031711 Bacteria 38675
102 Ga0265314_10030515 3300031711 Bacteria 3988
103 Ga0307516_10002437 3300031730 Bacteria 24880
104 Ga0307516_10004098 3300031730 Bacteria 18219
105 Ga0307516_10084225 3300031730 Bacteria 3019
106 Ga0307407_10116175 3300031903 Unclassified 1688
107 Ga0307414_10037416 3300032004 Bacteria 3249
108 Ga0307415_100063998 3300032126 Bacteria 2558
109 Ga0373931_0001371 3300035691 Bacteria 10416
110 Ga0395905_0005588 3300037471 Bacteria 12807
111 Ga0237819_00230 3300038705 Bacteria 20465
112 Ga0400483_055637 3300039062 Bacteria 2299
113 Ga0436361_0086324 3300039447 Bacteria 39001
114 Ga0436361_0878496 3300039447 Bacteria 34656
115 Ga0439465_0003983 3300041413 Bacteria 4815
116 Ga0451839_1622463 3300041496 Bacteria 3261
117 Ga0451841_0621195 3300041498 Bacteria 3264
118 Ga0451845_0018122 3300041501 Bacteria 2154
119 Ga0451847_0230942 3300041503 Bacteria 1895
120 Ga0451849_1476299 3300041505 Bacteria 2271
121 Ga0451853_0249233 3300041512 Bacteria 3772
122 Ga0439432_016239 3300042006 Bacteria 2508
123 Ga0439449_0010515 3300042007 Bacteria 3497
124 Ga0451577_0000465 3300042876 Bacteria 70232
125 Ga0451577_0000934 3300042876 Bacteria 42950
126 Ga0451577_0303211 3300042876 Bacteria 1447
127 Ga0466969_0066167 3300044656 Bacteria 1745
128 Ga0466981_0000003 3300044669 Bacteria 248458
129 Ga0453683_0199045 3300044673 Bacteria 1272
130 Ga0466965_0032679 3300044683 Bacteria 2541
131 Ga0466966_0005766 3300044684 Bacteria 8156
132 Ga0466961_0016961 3300044693 Bacteria 4678
133 Ga0466964_0002546 3300044706 Bacteria 6494
134 Ga0453684_0069417 3300044712 Bacteria 4469
135 Ga0453684_0122370 3300044712 Bacteria 3139
136 Ga0466971_0006180 3300044719 Bacteria 5205
137 Ga0466957_0007792 3300044842 Bacteria 6064
138 Ga0466959_0001550 3300045049 Bacteria 14139
139 Ga0466967_0011729 3300045976 Bacteria 6661
140 Ga0495592_0002275 3300046454 Bacteria 13537
141 Ga0495651_0134689 3300046462 Bacteria 1799
142 Ga0495650_0006737 3300046471 Bacteria 7108
143 Ga0495662_0013845 3300046476 Bacteria 3925
144 Ga0495585_0003590 3300046492 Bacteria 10401
145 Ga0495607_0014168 3300046501 Bacteria 5201
146 Ga0495607_0110499 3300046501 Bacteria 1458
147 Ga0495606_0007565 3300046507 Bacteria 9679
148 Ga0495606_0026574 3300046507 Bacteria 4124
149 Ga0495606_0084761 3300046507 Bacteria 1962
150 Ga0495632_0073857 3300046519 Bacteria 1634
151 Ga0495643_0003739 3300046522 Bacteria 11011
152 Ga0495648_0004611 3300046524 Bacteria 11729
153 Ga0495622_0000320 3300046557 Bacteria 35426
154 Ga0495622_0011951 3300046557 Bacteria 4016
155 Ga0495625_0007756 3300046660 Bacteria 9269
156 Ga0495635_0078582 3300046663 Bacteria 2259
157 Ga0495670_0053739 3300046691 Bacteria 2017
158 Ga0495649_0012363 3300046694 Bacteria 4971
159 Ga0495649_0037181 3300046694 Bacteria 2673
160 Ga0495649_0043616 3300046694 Bacteria 2448
161 Ga0495600_0078554 3300046809 Bacteria 2155
162 Ga0495660_0001400 3300046810 Bacteria 16555
163 Ga0495660_0011848 3300046810 Bacteria 5057
164 Ga0495604_0005541 3300047317 Bacteria 10010
165 Ga0495686_0003965 3300047472 Bacteria 12421
166 Ga0496100_0223170 3300048903 Bacteria 1384
167 Ga0496101_0029812 3300048904 Bacteria 3817
168 Ga0496110_0036328 3300048913 Bacteria 4278
169 Ga0496116_0078317 3300048919 Bacteria 2062
170 Ga0496117_0000728 3300048920 Bacteria 51699
171 Ga0496118_0112856 3300048921 Bacteria 1798
172 Ga0496119_0000651 3300048922 Bacteria 46873
173 Ga0496119_0125147 3300048922 Bacteria 1407
174 Ga0496120_0000285 3300048923 Bacteria 85370
175 Ga0496121_0011434 3300048924 Bacteria 9856
176 Ga0496122_0000913 3300048925 Bacteria 54280
177 Ga0496123_0000068 3300048926 Bacteria 208797
178 Ga0496124_0000732 3300048927 Bacteria 53766
179 Ga0501308_001451 3300049128 Bacteria 1898
180 Ga0501310_001399 3300049130 Bacteria 2195
181 Ga0501305_006157 3300049161 Bacteria 1480
182 Ga0495678_000030 3300049459 Bacteria 217986
183 Ga0495678_000487 3300049459 Bacteria 39369
184 Ga0501031_0023040 3300049568 Bacteria 4061
185 Ga0501044_0045795 3300049823 Bacteria 4531
186 nmdc:mga03683_49189_c1 3300050489 Bacteria 1754
187 nmdc:mga0k408_14212_c1 3300050493 Bacteria 4382
188 nmdc:mga0k408_1719_c1 3300050493 Bacteria 11743
189 nmdc:mga0k408_3378_c1 3300050493 Bacteria 3571
190 nmdc:mga0k408_64283_c1 3300050493 Bacteria 2135
191 nmdc:mga06z11_122754_c1 3300050494 Bacteria 1451
192 nmdc:mga07m45_4111_c1 3300050496 Bacteria 7101
193 Ga0495655_0031615 3300053083 Bacteria 1289
194 Ga0500594_0007733 3300053118 Bacteria 2438
195 Ga0500607_083224 3300053121 Bacteria 1627
196 Ga0500618_001654 3300053125 Bacteria 9583
197 Ga0500658_0000130 3300053134 Bacteria 35446
198 Ga0500659_0102397 3300053135 Bacteria 1482
199 Ga0500559_0000584 3300053136 Bacteria 25005
200 Ga0500604_0000001 3300053151 Bacteria 174619
201 Ga0500627_0091707 3300053158 Bacteria 1360
202 Ga0466962_0017342 3300061719 Bacteria 3467

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300002705 JGI25156J39149_1000532 JGI25156J39149_100053217 332
2 3300003214 JGI25165J46597_1000902 JGI25165J46597_100090215 332
3 3300003567 Ga0006554J51385_1039294 Ga0006554J51385_10392942 332
4 3300003756 Ga0055533_1000119 Ga0055533_100011930 332
5 3300003758 Ga0055532_1000043 Ga0055532_1000043138 332
6 3300003760 Ga0055527_1000026 Ga0055527_100002639 332
7 3300003761 Ga0055535_1000032 Ga0055535_100003241 332
8 3300003762 Ga0055542_1000049 Ga0055542_1000049138 332
9 3300003763 Ga0055529_1000059 Ga0055529_100005941 332
10 3300009093 Ga0105240_10240393 Ga0105240_102403932 332
11 3300013105 Ga0157369_10074009 Ga0157369_100740092 332
12 3300025226 Ga0209674_100017 Ga0209674_100017426 332
13 3300025228 Ga0209672_100001 Ga0209672_1000012370 332
14 3300025229 Ga0209147_100022 Ga0209147_100022138 332
15 3300025230 Ga0209563_100692 Ga0209563_1006927 332
16 3300025242 Ga0209258_100033 Ga0209258_100033275 332
17 3300025254 Ga0209148_1000046 Ga0209148_1000046139 332
18 3300025256 Ga0209759_1000780 Ga0209759_100078024 332
19 3300025261 Ga0209233_1000050 Ga0209233_1000050141 332
20 3300025272 Ga0209455_1000038 Ga0209455_1000038139 332
21 3300025913 Ga0207695_10161871 Ga0207695_101618712 332
22 3300046507 Ga0495606_0026574 Ga0495606_0026574_1781_2926 332
23 3300046694 Ga0495649_0043616 Ga0495649_0043616_453_1598 332
24 3300021361 Ga0213872_10007636 Ga0213872_100076365 333
25 3300039447 Ga0436361_0878496 Ga0436361_0878496_4757_5872 333
26 3300046501 Ga0495607_0110499 Ga0495607_0110499_215_1318 333
27 3300046507 Ga0495606_0007565 Ga0495606_0007565_4689_5792 333
28 3300046810 Ga0495660_0001400 Ga0495660_0001400_9182_10285 333
29 3300047472 Ga0495686_0003965 Ga0495686_0003965_6381_7484 333
30 3300003775 Ga0055524_1031350 Ga0055524_10313502 334
31 3300013306 Ga0163162_10193954 Ga0163162_101939541 334
32 3300025258 Ga0209129_1005276 Ga0209129_10052761 334
33 3300025295 Ga0209564_1016887 Ga0209564_10168872 334
34 3300041496 Ga0451839_1622463 Ga0451839_1622463_1363_2496 334
35 3300041498 Ga0451841_0621195 Ga0451841_0621195_1477_2610 334
36 3300041503 Ga0451847_0230942 Ga0451847_0230942_654_1787 334
37 3300041505 Ga0451849_1476299 Ga0451849_1476299_654_1787 334
38 3300041512 Ga0451853_0249233 Ga0451853_0249233_109_1242 334
39 3300042876 Ga0451577_0303211 Ga0451577_0303211_209_1318 334
40 3300046501 Ga0495607_0014168 Ga0495607_0014168_1815_2948 334
41 3300046519 Ga0495632_0073857 Ga0495632_0073857_473_1606 334
42 3300046522 Ga0495643_0003739 Ga0495643_0003739_8488_9648 334
43 3300046660 Ga0495625_0007756 Ga0495625_0007756_7187_8320 334
44 3300046691 Ga0495670_0053739 Ga0495670_0053739_170_1303 334
45 3300046810 Ga0495660_0011848 Ga0495660_0011848_3210_4343 334
46 3300049459 Ga0495678_000487 Ga0495678_000487_14225_15340 334
47 3300053083 Ga0495655_0031615 Ga0495655_0031615_35_1195 334
48 3300053118 Ga0500594_0007733 Ga0500594_0007733_471_1604 334
49 3300053134 Ga0500658_0000130 Ga0500658_0000130_14989_16122 334
50 3300053158 Ga0500627_0091707 Ga0500627_0091707_102_1262 334
51 3300028794 Ga0307515_10029196 Ga0307515_100291967 335
52 3300028800 Ga0265338_10033754 Ga0265338_100337545 335
53 3300029957 Ga0265324_10000381 Ga0265324_1000038114 335
54 3300031711 Ga0265314_10000756 Ga0265314_1000075624 335
55 3300003856 Ga0058692_1000261 Ga0058692_10002617 336
56 3300003856 Ga0058692_1000518 Ga0058692_10005188 336
57 3300005366 Ga0070659_100066183 Ga0070659_1000661831 336
58 3300006195 Ga0075366_10003098 Ga0075366_100030986 336
59 3300027312 Ga0209371_1000001 Ga0209371_10000012155 336
60 3300030500 Ga0268256_1000001 Ga0268256_1000001485 336
61 3300044669 Ga0466981_0000003 Ga0466981_0000003_81454_82554 336
62 3300050493 nmdc:mga0k408_3378_c1 nmdc:mga0k408_3378_c1_1532_2632 336
63 3300006195 Ga0075366_10001228 Ga0075366_100012283 337
64 3300006353 Ga0075370_10007639 Ga0075370_100076394 337
65 3300041413 Ga0439465_0003983 Ga0439465_0003983_3509_4642 337
66 3300042006 Ga0439432_016239 Ga0439432_016239_310_1443 337
67 3300042007 Ga0439449_0010515 Ga0439449_0010515_2054_3187 337
68 3300050493 nmdc:mga0k408_1719_c1 nmdc:mga0k408_1719_c1_1991_3109 337
69 3300050496 nmdc:mga07m45_4111_c1 nmdc:mga07m45_4111_c1_620_1738 337
70 3300053136 Ga0500559_0000584 Ga0500559_0000584_12835_13944 338
71 3300031250 Ga0265331_10006533 Ga0265331_100065337 340
72 3300031251 Ga0265327_10012647 Ga0265327_100126473 340
73 3300038705 Ga0237819_00230 Ga0237819_00230_6599_7729 340
74 3300046471 Ga0495650_0006737 Ga0495650_0006737_4978_6090 340
75 3300046524 Ga0495648_0004611 Ga0495648_0004611_2853_3965 340
76 3300048903 Ga0496100_0223170 Ga0496100_0223170_270_1367 340
77 3300046492 Ga0495585_0003590 Ga0495585_0003590_6751_7905 341
78 3300003775 Ga0055524_1000025 Ga0055524_1000025106 342
79 3300006948 Ga0099826_10000005 Ga0099826_1000000579 342
80 3300025263 Ga0209565_1002809 Ga0209565_10028095 342
81 3300025299 Ga0209256_1000040 Ga0209256_100004080 342
82 3300027666 Ga0209282_1000003 Ga0209282_1000003721 342
83 3300046694 Ga0495649_0037181 Ga0495649_0037181_700_1809 342
84 3300031344 Ga0265316_10107483 Ga0265316_101074833 344
85 3300031711 Ga0265314_10030515 Ga0265314_100305152 344
86 3300003790 Ga0055528_1002119 Ga0055528_100211911 345
87 3300006048 Ga0075363_100132020 Ga0075363_1001320202 345
88 3300025245 Ga0207425_1009474 Ga0207425_10094743 345
89 3300025273 Ga0209673_1002354 Ga0209673_100235412 345
90 3300046507 Ga0495606_0084761 Ga0495606_0084761_598_1791 345
91 3300046694 Ga0495649_0012363 Ga0495649_0012363_2608_3801 345
92 3300048919 Ga0496116_0078317 Ga0496116_0078317_755_1948 345
93 3300048921 Ga0496118_0112856 Ga0496118_0112856_591_1784 345
94 3300050493 nmdc:mga0k408_64283_c1 nmdc:mga0k408_64283_c1_265_1431 345
95 3300050494 nmdc:mga06z11_122754_c1 nmdc:mga06z11_122754_c1_271_1437 345
96 3300053135 Ga0500659_0102397 Ga0500659_0102397_115_1308 345
97 3300009545 Ga0105237_10056227 Ga0105237_100562273 346
98 3300009551 Ga0105238_10111414 Ga0105238_101114143 346
99 3300025924 Ga0207694_10097771 Ga0207694_100977713 346
100 3300041501 Ga0451845_0018122 Ga0451845_0018122_433_1542 347
101 3300026089 Ga0207648_10278127 Ga0207648_102781272 348
102 3300003792 Ga0055540_1017466 Ga0055540_10174662 349
103 3300003794 Ga0055531_10000007 Ga0055531_10000007194 349
104 3300025298 Ga0209050_1003662 Ga0209050_10036624 349
105 3300025303 Ga0209051_1011431 Ga0209051_10114312 349
106 3300025304 Ga0209257_1000021 Ga0209257_100002134 349
107 3300025304 Ga0209257_1025256 Ga0209257_10252562 349
108 3300037471 Ga0395905_0005588 Ga0395905_0005588_5396_6511 349
109 3300005336 Ga0070680_100002038 Ga0070680_1000020386 351
110 3300025917 Ga0207660_10002921 Ga0207660_100029217 351
111 3300053125 Ga0500618_001654 Ga0500618_001654_1992_3167 351
112 iso_pu_bacteria 2923634449 2923635649 351
113 3300005327 Ga0070658_10033187 Ga0070658_100331874 352
114 3300013306 Ga0163162_10179282 Ga0163162_101792821 352
115 3300025909 Ga0207705_10015711 Ga0207705_100157115 352
116 3300044712 Ga0453684_0069417 Ga0453684_0069417_1482_2588 352
117 3300027312 Ga0209371_1018085 Ga0209371_10180852 353
118 3300030500 Ga0268256_1020153 Ga0268256_10201531 353
119 3300031903 Ga0307407_10116175 Ga0307407_101161752 353
120 3300032126 Ga0307415_100063998 Ga0307415_1000639982 353
121 3300044673 Ga0453683_0199045 Ga0453683_0199045_90_1205 353
122 3300044712 Ga0453684_0122370 Ga0453684_0122370_820_1935 353
123 iso_pu_bacteria 2718217927 2719384944 353
124 iso_pu_bacteria 2718217997 2719664691 353
125 iso_pu_bacteria 2718218199 2720491111 353
126 iso_pu_bacteria 2718218232 2720612478 353
127 iso_pu_bacteria 2718218423 2721398664 353
128 iso_pu_bacteria 2721755556 2723026137 353
129 iso_pu_bacteria 2721755809 2724037477 353
130 iso_pu_bacteria 2721755823 2724109401 353
131 iso_pu_bacteria 2728369352 2730107073 353
132 iso_pu_bacteria 2791355265 2793355128 353
133 iso_pu_bacteria 2802429605 2805926506 353
134 iso_pu_bacteria 2838016132 2838017360 353
135 iso_pu_bacteria 2838048938 2838049158 353
136 iso_pu_bacteria 2838061910 2838063396 353
137 iso_pu_bacteria 2838668709 2838670919 353
138 iso_pu_bacteria 2838701080 2838703290 353
139 iso_pu_bacteria 2842146304 2842147486 353
140 iso_pu_bacteria 2842192696 2842198021 353
141 iso_pu_bacteria 2842250916 2842252552 353
142 iso_pu_bacteria 2842311132 2842314817 353
143 iso_pu_bacteria 2842317721 2842318580 353
144 iso_pu_bacteria 2842447887 2842452614 353
145 iso_pu_bacteria 2842489311 2842493829 353
146 iso_pu_bacteria 2842495871 2842497215 353
147 iso_pu_bacteria 8005275841 8005279665 353
148 iso_pu_bacteria 8005430974 8005437153 353
149 iso_pu_bacteria 8005619151 8005620600 353
150 iso_pu_bacteria 8024501048 8024503180 353
151 iso_pu_bacteria 8056382006 8056384674 353
152 3300005289 Ga0065704_10000261 Ga0065704_1000026125 354
153 3300032004 Ga0307414_10037416 Ga0307414_100374162 354
154 3300053151 Ga0500604_0000001 Ga0500604_0000001_33844_34953 354
155 iso_pu_bacteria 2513237144 2513909704 354
156 iso_pu_bacteria 2718218233 2720619321 354
157 iso_pu_bacteria 2718218235 2720630718 354
158 iso_pu_bacteria 2718218269 2720774411 354
159 iso_pu_bacteria 2721755684 2723559681 354
160 iso_pu_bacteria 2721755685 2723566299 354
161 iso_pu_bacteria 2721755819 2724089018 354
162 iso_pu_bacteria 2721755822 2724103564 354
163 iso_pu_bacteria 2838068647 2838072945 354
164 iso_pu_bacteria 2842264693 2842266850 354
165 iso_pu_bacteria 2842422224 2842426369 354
166 iso_pu_bacteria 2842428310 2842430981 354
167 iso_pu_bacteria 2842434925 2842437021 354
168 iso_pu_bacteria 2842441272 2842443099 354
169 iso_pu_bacteria 2842462802 2842465110 354
170 iso_pu_bacteria 2842469257 2842471664 354
171 iso_pu_bacteria 2933599457 2933603860 354
172 iso_pu_bacteria 8005282627 8005283564 354
173 iso_pu_bacteria 8005497431 8005499425 354
174 iso_pu_bacteria 8005626139 8005627033 354
175 3300021361 Ga0213872_10006116 Ga0213872_100061164 355
176 3300039447 Ga0436361_0086324 Ga0436361_0086324_32379_33638 355
177 3300042876 Ga0451577_0000465 Ga0451577_0000465_54397_55503 355
178 3300046454 Ga0495592_0002275 Ga0495592_0002275_181_1326 355
179 iso_pu_bacteria 2513237085 2513575341 355
180 iso_pu_bacteria 2904483920 2904488090 355
181 iso_pu_bacteria 8005395548 8005400297 355
182 iso_pu_bacteria 8005668836 8005670841 355
183 3300046557 Ga0495622_0000320 Ga0495622_0000320_13768_14877 356
184 3300049568 Ga0501031_0023040 Ga0501031_0023040_733_1875 356
185 3300005364 Ga0070673_100001525 Ga0070673_1000015252 357
186 3300005563 Ga0068855_100093922 Ga0068855_1000939225 357
187 3300013104 Ga0157370_10366268 Ga0157370_103662681 357
188 3300025949 Ga0207667_10058008 Ga0207667_100580082 357
189 3300025960 Ga0207651_10004275 Ga0207651_100042751 357
190 3300031730 Ga0307516_10084225 Ga0307516_100842252 358
191 3300035691 Ga0373931_0001371 Ga0373931_0001371_7864_9018 358
192 3300049459 Ga0495678_000030 Ga0495678_000030_129006_130148 358
193 3300006195 Ga0075366_10006434 Ga0075366_100064346 359
194 3300027378 Ga0209981_1002196 Ga0209981_10021962 359
195 3300027876 Ga0209974_10019613 Ga0209974_100196132 359
196 3300028794 Ga0307515_10004747 Ga0307515_100047473 359
197 3300031730 Ga0307516_10002437 Ga0307516_1000243711 359
198 3300039062 Ga0400483_055637 Ga0400483_055637_206_1333 359
199 3300048904 Ga0496101_0029812 Ga0496101_0029812_2603_3778 359
200 3300049128 Ga0501308_001451 Ga0501308_001451_672_1805 359
201 3300049161 Ga0501305_006157 Ga0501305_006157_241_1374 359
202 iso_pu_bacteria 2738541277 2738722992 359
203 iso_pu_bacteria 2738543019 2739283563 359
204 3300005364 Ga0070673_100018391 Ga0070673_1000183911 360
205 3300025923 Ga0207681_10085982 Ga0207681_100859822 360
206 3300025940 Ga0207691_10025429 Ga0207691_100254293 360
207 3300046476 Ga0495662_0013845 Ga0495662_0013845_1981_3126 360
208 3300046557 Ga0495622_0011951 Ga0495622_0011951_831_1976 360
209 3300046663 Ga0495635_0078582 Ga0495635_0078582_778_1923 360
210 3300046809 Ga0495600_0078554 Ga0495600_0078554_806_1951 360
211 3300047317 Ga0495604_0005541 Ga0495604_0005541_1236_2381 360
212 3300048922 Ga0496119_0125147 Ga0496119_0125147_226_1371 360
213 3300053121 Ga0500607_083224 Ga0500607_083224_260_1405 360
214 3300005366 Ga0070659_100068812 Ga0070659_1000688122 361
215 3300005563 Ga0068855_100050358 Ga0068855_1000503583 361
216 3300009176 Ga0105242_10001710 Ga0105242_100017102 361
217 3300025934 Ga0207686_10011308 Ga0207686_100113084 361
218 3300025949 Ga0207667_10080934 Ga0207667_100809343 361
219 3300042876 Ga0451577_0000934 Ga0451577_0000934_19335_20507 361
220 3300049823 Ga0501044_0045795 Ga0501044_0045795_672_1883 361
221 3300031730 Ga0307516_10004098 Ga0307516_100040985 363
222 3300046462 Ga0495651_0134689 Ga0495651_0134689_437_1624 363
223 3300025256 Ga0209759_1001717 Ga0209759_100171711 365
224 3300048924 Ga0496121_0011434 Ga0496121_0011434_5002_6150 365
225 iso_pu_bacteria 2516653085 2517081511 366
226 3300025256 Ga0209759_1016470 Ga0209759_10164702 367
227 3300025303 Ga0209051_1005658 Ga0209051_10056584 367
228 3300031548 Ga0307408_100116410 Ga0307408_1001164101 367
229 3300028666 Ga0265336_10000014 Ga0265336_10000014198 368
230 3300029957 Ga0265324_10005039 Ga0265324_100050393 368
231 3300045976 Ga0466967_0011729 Ga0466967_0011729_2979_4166 370
232 3300044656 Ga0466969_0066167 Ga0466969_0066167_496_1674 373
233 3300044683 Ga0466965_0032679 Ga0466965_0032679_1091_2269 373
234 3300044684 Ga0466966_0005766 Ga0466966_0005766_6263_7441 373
235 3300044693 Ga0466961_0016961 Ga0466961_0016961_1446_2624 373
236 3300044706 Ga0466964_0002546 Ga0466964_0002546_80_1258 373
237 3300044719 Ga0466971_0006180 Ga0466971_0006180_1540_2718 373
238 3300044842 Ga0466957_0007792 Ga0466957_0007792_3155_4333 373
239 3300045049 Ga0466959_0001550 Ga0466959_0001550_3446_4624 373
240 3300061719 Ga0466962_0017342 Ga0466962_0017342_1446_2624 373
241 3300006177 Ga0075362_10011786 Ga0075362_100117863 376
242 3300028786 Ga0307517_10093293 Ga0307517_100932931 376
243 3300030522 Ga0307512_10060584 Ga0307512_100605843 376
244 3300050489 nmdc:mga03683_49189_c1 nmdc:mga03683_49189_c1_142_1425 376
245 3300006195 Ga0075366_10015315 Ga0075366_100153153 377
246 3300031251 Ga0265327_10000559 Ga0265327_100005599 377
247 3300050493 nmdc:mga0k408_14212_c1 nmdc:mga0k408_14212_c1_1690_2892 377
248 3300049130 Ga0501310_001399 Ga0501310_001399_160_1338 378
249 3300048913 Ga0496110_0036328 Ga0496110_0036328_1964_3157 382
250 2162886007 SwRhRL2b_contig_1159591 SwRhRL2b_0532.00005430 384
251 3300005289 Ga0065704_10070514 Ga0065704_1007051413 384
252 3300009011 Ga0105251_10000094 Ga0105251_1000009431 384
253 3300025735 Ga0207713_1000257 Ga0207713_100025740 384
254 3300048920 Ga0496117_0000728 Ga0496117_0000728_891_2078 384
255 3300048922 Ga0496119_0000651 Ga0496119_0000651_34788_35975 384
256 3300048923 Ga0496120_0000285 Ga0496120_0000285_43241_44428 384
257 3300048925 Ga0496122_0000913 Ga0496122_0000913_40726_41913 384
258 3300048926 Ga0496123_0000068 Ga0496123_0000068_14924_16111 384
259 3300048927 Ga0496124_0000732 Ga0496124_0000732_10930_12117 384

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01041

DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

44

384

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2po3-assembly1.cif.gz_B crystal structure analysis of desi in the presence of its tdp-sugar product 0.9434 2 356
3uwc-assembly1.cif.gz_A structure of an aminotransferase (degt-dnrj-eryc1-strs family) from coxiella burnetii in complex with pmp 0.9293 13 352
3bn1-assembly2.cif.gz_C crystal structure of gdp-perosamine synthase 0.928 3 354
3dr4-assembly1.cif.gz_A gdp-perosamine synthase k186a mutant from caulobacter crescentus with bound sugar ligand 0.9249 11 351
2fn6-assembly1.cif.gz_A helicobacter pylori psec, aminotransferase involved in the biosynthesis of pseudoaminic acid 0.922 1 358
ID Description Score Start End Superfamily
5u1zA01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9439 13 228 3.40.640.10
4qgrB01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9354 13 228 3.40.640.10
2po3B01 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9299 13 215 3.40.640.10
3frkB02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9219 231 354 3.90.1150.10
3bn1A02 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9205 231 354 3.90.1150.10
ID Description Score Start End GO Terms
AF-A0A656GGJ3-F1-model_v4 Aminotransferase 0.983 1 253 GO:0000271
GO:0008483
GO:0030170
AF-A0A419F027-F1-model_v4 DegT/DnrJ/EryC1/StrS family aminotransferase 0.9827 10 358 GO:0000271
GO:0008483
GO:0030170
AF-A0A1M7N9Y0-F1-model_v4 dTDP-4-amino-4,6-dideoxygalactose transaminase 0.9803 2 357 GO:0000271
GO:0008483
GO:0030170
AF-A0A2T5RHU6-F1-model_v4 dTDP-4-amino-4,6-dideoxygalactose transaminase 0.9787 2 352 GO:0000271
GO:0008483
GO:0030170
AF-A0A0T5NQ52-F1-model_v4 Aminotransferase 0.9766 1 352 GO:0000271
GO:0008483
GO:0030170

Feature Viewer

pLDDT pTM Quality
87.89 0.85 High
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Predicted Structure (AlphaFold2)

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