F339270

General Info

Members Datasets Scaffolds Average Seq Length
226 150 222 425

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0007367|Ga0501031_0007367_2385_3668
Length 427
Sequence MAHIVILGAGTGGMPAAYELRATLDKTHRITVVNATDYFQFVPSNPWVAVGWRERSQTTLPIAPHLAKKDIAFIARRVDKIDAEGRTLELEGGQQLAYDYLIITTGPKLSFDEVPGSGPLNGHTQSICTVEHAENAWAEYQKFLQDPGPAIIGAMPGASCFGPAYEFAFIFNKDLQRRKLRHKVPITFVTSEPYIGHLGLAGVGDSKTLLESELRSFDIKWITNAKTTRVENGKMFVTELDDAGQPKKEHELPFKFSMMLPAFKGVDAVAAVEGLCNPRGFVLIDEYQRSKKYRNIFSAGVCVAIPPVEATPVPTGAPKTGYMIETMVSAICHNIAAELAGRPEDATAKATWNAICLADMGDTGAAFVALPQIPPRNVNWFKKGKWVHLAKIAFEKYFMHKMKTGSHEPFYEKHVLKALGIERLEKP

Samples

Sample ID Description Type Environment
1 2600255067 Paraburkholderia kururiensis thiooxydans NBRC 107107 Isolate Unclassified
2 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
3 2721755763 Pandoraea thiooxydans ATSB16 Isolate Rhizosphere
4 2929520902 Variovorax beijingensis 502 Isolate Unclassified
5 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
6 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
44 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
45 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
74 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
75 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
76 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
77 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
78 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
79 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
80 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
81 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
82 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
83 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
84 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
85 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
86 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
87 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
88 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
91 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
92 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
93 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
94 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
98 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
99 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
100 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
101 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
102 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
103 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
105 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
107 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
108 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
109 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
110 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
111 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
112 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
113 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
114 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
115 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
116 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
117 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
118 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
119 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
120 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
121 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
122 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
123 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
124 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
125 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
126 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
127 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
128 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
129 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
130 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
131 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
132 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
140 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
141 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
142 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
143 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
144 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
147 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
148 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
149 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
150 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.48
Metatranscriptomes 5.75
Isolates 1.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.33
Nodule 0
Rhizoplane 0
Rhizosphere 88.94
Stem 0
Stem Tuber 0
Unclassified 9.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055535_1005508 3300003761 Bacteria 2754
2 Ga0065714_10065747 3300005288 Bacteria 8653
3 Ga0070690_100004686 3300005330 Bacteria 7620
4 Ga0070670_100010301 3300005331 Bacteria 7979
5 Ga0068869_100008787 3300005334 Bacteria 6533
6 Ga0070666_10044724 3300005335 Bacteria 2967
7 Ga0068868_100007604 3300005338 Bacteria 7725
8 Ga0070660_100022733 3300005339 Bacteria 4642
9 Ga0070689_100025737 3300005340 Bacteria 4423
10 Ga0070675_100009285 3300005354 Bacteria 7646
11 Ga0070671_100002510 3300005355 Bacteria 14216
12 Ga0070659_100000877 3300005366 Bacteria 21982
13 Ga0070667_100019421 3300005367 Bacteria 5638
14 Ga0070667_100024035 3300005367 Bacteria 5061
15 Ga0070678_100004718 3300005456 Bacteria 7764
16 Ga0068867_100048766 3300005459 Bacteria 3117
17 Ga0070672_100043960 3300005543 Bacteria 3448
18 Ga0070665_100036952 3300005548 Bacteria 4911
19 Ga0070665_100254706 3300005548 Bacteria 1756
20 Ga0068855_100017556 3300005563 Bacteria 8605
21 Ga0070664_100018626 3300005564 Bacteria 5707
22 Ga0068852_100057070 3300005616 Bacteria 3377
23 Ga0068852_100145100 3300005616 Bacteria 2201
24 Ga0068859_100070611 3300005617 Bacteria 3528
25 Ga0068864_100003801 3300005618 Bacteria 12448
26 Ga0068851_10016128 3300005834 Bacteria 3570
27 Ga0068858_100007406 3300005842 Bacteria 10616
28 Ga0068860_100127756 3300005843 Bacteria 2437
29 Ga0068862_100045906 3300005844 Bacteria 3728
30 Ga0068871_100006610 3300006358 Bacteria 8222
31 Ga0068871_100080079 3300006358 Bacteria 2704
32 Ga0075429_100001348 3300006880 Bacteria 20076
33 Ga0097620_100070601 3300006931 Bacteria 3528
34 Ga0105248_10007622 3300009177 Bacteria 11891
35 Ga0105248_10215163 3300009177 Bacteria 2165
36 Ga0157374_10011997 3300013296 Bacteria 7523
37 Ga0163162_10352173 3300013306 Bacteria 1605
38 Ga0157372_10009315 3300013307 Bacteria 10444
39 Ga0157375_10032539 3300013308 Bacteria 4946
40 Ga0163163_10026420 3300014325 Bacteria 5549
41 Ga0157380_10042734 3300014326 Bacteria 3544
42 Ga0157377_10009506 3300014745 Bacteria 4773
43 Ga0157379_10002728 3300014968 Bacteria 14890
44 Ga0182007_10026150 3300015262 Bacteria 2026
45 Ga0183369_1006 3300015685 Bacteria 449058
46 Ga0209258_100393 3300025242 Bacteria 55177
47 Ga0207656_10054168 3300025321 Bacteria 1743
48 Ga0207680_10009866 3300025903 Bacteria 4755
49 Ga0207681_10206127 3300025923 Bacteria 1512
50 Ga0207659_10002140 3300025926 Bacteria 11718
51 Ga0207644_10005006 3300025931 Bacteria 8650
52 Ga0207644_10037684 3300025931 Bacteria 3403
53 Ga0207690_10043860 3300025932 Bacteria 2945
54 Ga0207706_10004386 3300025933 Bacteria 13262
55 Ga0207670_10055627 3300025936 Bacteria 2675
56 Ga0207691_10105555 3300025940 Bacteria 2510
57 Ga0207711_10008664 3300025941 Bacteria 8508
58 Ga0207689_10014589 3300025942 Bacteria 6680
59 Ga0207679_10004089 3300025945 Bacteria 9054
60 Ga0207667_10059748 3300025949 Bacteria 3991
61 Ga0207651_10003284 3300025960 Bacteria 7915
62 Ga0207668_10054216 3300025972 Bacteria 2783
63 Ga0207658_10011281 3300025986 Bacteria 6085
64 Ga0207658_10015615 3300025986 Bacteria 5211
65 Ga0207677_10001204 3300026023 Bacteria 14025
66 Ga0207703_10003116 3300026035 Bacteria 14004
67 Ga0207641_10005236 3300026088 Bacteria 11093
68 Ga0207648_10066282 3300026089 Bacteria 3149
69 Ga0207676_10002195 3300026095 Bacteria 14076
70 Ga0207675_100020530 3300026118 Bacteria 6158
71 Ga0207698_10003440 3300026142 Bacteria 9531
72 Ga0207698_10136423 3300026142 Bacteria 2106
73 Ga0209971_1003050 3300027682 Bacteria 4002
74 Ga0209974_10007052 3300027876 Bacteria 3885
75 Ga0268266_10068249 3300028379 Bacteria 3078
76 Ga0268264_10053160 3300028381 Bacteria 3379
77 Ga0265336_10000051 3300028666 Bacteria 114796
78 Ga0307517_10051171 3300028786 Bacteria 4177
79 Ga0265324_10002270 3300029957 Bacteria 10019
80 Ga0265330_10000092 3300031235 Bacteria 75194
81 Ga0265330_10003210 3300031235 Bacteria 8617
82 Ga0265332_10000006 3300031238 Bacteria 327963
83 Ga0265332_10000018 3300031238 Bacteria 224913
84 Ga0265325_10001101 3300031241 Bacteria 19387
85 Ga0265331_10000891 3300031250 Bacteria 24274
86 Ga0265327_10001886 3300031251 Bacteria 24245
87 Ga0265316_10014481 3300031344 Bacteria 6936
88 Ga0265316_10120373 3300031344 Bacteria 1983
89 Ga0307509_10000109 3300031507 Bacteria 117520
90 Ga0307408_100012737 3300031548 Bacteria 5577
91 Ga0316575_10005222 3300031665 Bacteria 4620
92 Ga0316575_10015041 3300031665 Bacteria 2914
93 Ga0316579_10002325 3300031691 Bacteria 7184
94 Ga0316579_10004550 3300031691 Bacteria 5518
95 Ga0316579_10013502 3300031691 Bacteria 3513
96 Ga0316579_10024341 3300031691 Bacteria 2725
97 Ga0265314_10000266 3300031711 Bacteria 76574
98 Ga0316576_10015697 3300031727 Bacteria 5090
99 Ga0316576_10127623 3300031727 Bacteria 1912
100 Ga0316578_10008915 3300031728 Bacteria 5130
101 Ga0316578_10050537 3300031728 Bacteria 2433
102 Ga0316578_10100671 3300031728 Bacteria 1732
103 Ga0307516_10000709 3300031730 Bacteria 45280
104 Ga0307405_10026353 3300031731 Bacteria 3352
105 Ga0316577_10017965 3300031733 Bacteria 3909
106 Ga0316577_10033408 3300031733 Bacteria 2874
107 Ga0307413_10004975 3300031824 Bacteria 5862
108 Ga0307410_10006722 3300031852 Bacteria 6233
109 Ga0307406_10001748 3300031901 Bacteria 11907
110 Ga0307406_10020061 3300031901 Bacteria 3930
111 Ga0307416_100268446 3300032002 Bacteria 1673
112 Ga0307414_10203211 3300032004 Bacteria 1613
113 Ga0307411_10002648 3300032005 Bacteria 8021
114 Ga0307415_100018734 3300032126 Bacteria 4188
115 Ga0316583_10002266 3300032133 Bacteria 6624
116 Ga0316583_10007477 3300032133 Bacteria 3933
117 Ga0316583_10018439 3300032133 Bacteria 2504
118 Ga0316583_10024081 3300032133 Bacteria 2174
119 Ga0316583_10054108 3300032133 Bacteria 1411
120 Ga0316585_10005484 3300032137 Bacteria 3583
121 Ga0316580_10001640 3300032139 Bacteria 5927
122 Ga0316593_10000976 3300032168 Bacteria 5920
123 Ga0316593_10014583 3300032168 Bacteria 2347
124 Ga0316593_10023424 3300032168 Bacteria 1948
125 Ga0316593_10030179 3300032168 Bacteria 1758
126 Ga0316592_1005267 3300033524 Bacteria 2447
127 Ga0316592_1011644 3300033524 Bacteria 1792
128 Ga0316592_1014656 3300033524 Bacteria 1627
129 Ga0316588_1008711 3300033528 Bacteria 2096
130 Ga0316587_1005886 3300033529 Bacteria 1856
131 Ga0316587_1009262 3300033529 Bacteria 1559
132 Ga0316596_1003574 3300033541 Bacteria 3422
133 Ga0316596_1009228 3300033541 Bacteria 2365
134 Ga0316596_1023970 3300033541 Bacteria 1565
135 Ga0373952_0000393 3300035092 Bacteria 7477
136 Ga0373955_0069859 3300035172 Bacteria 1961
137 Ga0373955_0077920 3300035172 Bacteria 1867
138 Ga0316574_0000037 3300035398 Bacteria 32045
139 Ga0316574_0001999 3300035398 Bacteria 10031
140 Ga0316574_0017230 3300035398 Bacteria 4225
141 Ga0316574_0020868 3300035398 Bacteria 3882
142 Ga0316574_0027257 3300035398 Bacteria 3441
143 Ga0316574_0045486 3300035398 Bacteria 2718
144 Ga0316574_0095609 3300035398 Bacteria 1899
145 Ga0373937_0060867 3300036401 Bacteria 3470
146 Ga0316582_0017964 3300036647 Bacteria 4105
147 Ga0316582_0019308 3300036647 Bacteria 3987
148 Ga0316582_0040508 3300036647 Bacteria 2907
149 Ga0316582_0066473 3300036647 Bacteria 2324
150 Ga0316582_0092079 3300036647 Bacteria 1997
151 Ga0316582_0164436 3300036647 Bacteria 1504
152 Ga0316584_0000867 3300036712 Bacteria 17177
153 Ga0316584_0015062 3300036712 Bacteria 5524
154 Ga0316584_0029835 3300036712 Bacteria 4027
155 Ga0316584_0034434 3300036712 Bacteria 3754
156 Ga0316584_0037834 3300036712 Bacteria 3588
157 Ga0316584_0047782 3300036712 Bacteria 3197
158 Ga0316584_0050451 3300036712 Bacteria 3111
159 Ga0316584_0068481 3300036712 Bacteria 2660
160 Ga0316584_0085095 3300036712 Bacteria 2367
161 Ga0316584_0102157 3300036712 Bacteria 2147
162 Ga0395905_0000585 3300037471 Bacteria 48944
163 Ga0395905_0336263 3300037471 Bacteria 1401
164 Ga0316581_0015168 3300037588 Bacteria 2198
165 Ga0400484_07349 3300038725 Bacteria 21353
166 Ga0400484_36110 3300038725 Bacteria 17764
167 Ga0400490_14046 3300038726 Bacteria 7992
168 Ga0400490_27890 3300038726 Bacteria 48514
169 Ga0400485_04923 3300038735 Bacteria 131311
170 Ga0400488_43156 3300038741 Bacteria 2778
171 Ga0400488_55804 3300038741 Bacteria 11148
172 Ga0400488_59189 3300038741 Bacteria 9385
173 Ga0400486_22493 3300038742 Bacteria 147980
174 Ga0400483_097670 3300039062 Bacteria 17753
175 Ga0400483_128923 3300039062 Bacteria 9998
176 Ga0400483_166230 3300039062 Bacteria 16745
177 Ga0400487_23023 3300039110 Bacteria 55124
178 Ga0400487_38243 3300039110 Bacteria 71080
179 Ga0400487_48661 3300039110 Bacteria 44517
180 Ga0451577_0084221 3300042876 Bacteria 2837
181 Ga0466969_0000065 3300044656 Bacteria 54697
182 Ga0466972_0000098 3300044658 Bacteria 76807
183 Ga0466972_0032334 3300044658 Bacteria 2569
184 Ga0453683_0003406 3300044673 Bacteria 11739
185 Ga0466966_0022121 3300044684 Bacteria 4174
186 Ga0453684_0000891 3300044712 Bacteria 99637
187 Ga0453684_0001981 3300044712 Bacteria 52539
188 Ga0453684_0010654 3300044712 Bacteria 15654
189 Ga0453684_0049981 3300044712 Bacteria 5505
190 Ga0453684_0095127 3300044712 Bacteria 3662
191 Ga0466959_0201935 3300045049 Bacteria 1383
192 Ga0451576_0002533 3300045051 Bacteria 27062
193 Ga0466958_0083423 3300045836 Bacteria 1969
194 Ga0501292_008127 3300049515 Bacteria 1529
195 Ga0501031_0007367 3300049568 Bacteria 7172
196 Ga0501033_0072037 3300049570 Bacteria 2538
197 Ga0501033_0093001 3300049570 Bacteria 2205
198 Ga0501034_0065243 3300049571 Bacteria 3653
199 Ga0501042_0158463 3300049578 Bacteria 1633
200 Ga0501043_0093911 3300049579 Bacteria 2358
201 Ga0501046_0006656 3300049580 Bacteria 10204
202 Ga0501046_0154484 3300049580 Bacteria 1730
203 Ga0501047_0030791 3300049581 Bacteria 5172
204 Ga0501047_0091419 3300049581 Bacteria 2921
205 Ga0501047_0260560 3300049581 Bacteria 1582
206 Ga0501070_0009045 3300049586 Bacteria 8425
207 Ga0501070_0120240 3300049586 Bacteria 2171
208 Ga0501071_0056206 3300049587 Bacteria 2842
209 Ga0501074_0000357 3300049590 Bacteria 26763
210 Ga0501080_0000348 3300049742 Bacteria 35438
211 Ga0501262_004640 3300049759 Bacteria 1600
212 Ga0501035_0032956 3300049822 Bacteria 4712
213 Ga0501035_0093495 3300049822 Bacteria 2645
214 Ga0501035_0116206 3300049822 Bacteria 2341
215 Ga0501035_0278558 3300049822 Bacteria 1414
216 Ga0501044_0015494 3300049823 Bacteria 8211
217 Ga0501045_0046398 3300049824 Bacteria 3164
218 nmdc:mga09592_7260_c1 3300050508 Bacteria 9006
219 Ga0500574_011588 3300053141 Bacteria 1995
220 Ga0501084_0083489 3300054114 Bacteria 2681
221 Ga0501082_0023236 3300060353 Bacteria 5349
222 Ga0501082_0037966 3300060353 Bacteria 4154

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300035172 Ga0373955_0069859 Ga0373955_0069859_40_1128 358
2 3300049586 Ga0501070_0120240 Ga0501070_0120240_1070_2158 358
3 3300049570 Ga0501033_0072037 Ga0501033_0072037_17_1144 374
4 3300053141 Ga0500574_011588 Ga0500574_011588_15_1139 374
5 3300049578 Ga0501042_0158463 Ga0501042_0158463_47_1318 399
6 3300036647 Ga0316582_0019308 Ga0316582_0019308_49_1275 405
7 3300037588 Ga0316581_0015168 Ga0316581_0015168_26_1252 405
8 3300035092 Ga0373952_0000393 Ga0373952_0000393_4104_5333 408
9 3300035398 Ga0316574_0095609 Ga0316574_0095609_340_1569 408
10 3300044658 Ga0466972_0032334 Ga0466972_0032334_1023_2255 410
11 3300049822 Ga0501035_0032956 Ga0501035_0032956_1505_2752 410
12 3300036712 Ga0316584_0015062 Ga0316584_0015062_3835_5076 411
13 3300005456 Ga0070678_100004718 Ga0070678_1000047188 412
14 3300037471 Ga0395905_0336263 Ga0395905_0336263_126_1382 412
15 3300044712 Ga0453684_0001981 Ga0453684_0001981_48648_49919 412
16 3300038741 Ga0400488_55804 Ga0400488_55804_6385_7635 415
17 3300031665 Ga0316575_10015041 Ga0316575_100150411 416
18 3300031727 Ga0316576_10015697 Ga0316576_100156974 416
19 3300031728 Ga0316578_10008915 Ga0316578_100089152 416
20 3300031733 Ga0316577_10017965 Ga0316577_100179652 416
21 3300032139 Ga0316580_10001640 Ga0316580_100016402 416
22 3300035398 Ga0316574_0045486 Ga0316574_0045486_33_1286 416
23 3300036647 Ga0316582_0164436 Ga0316582_0164436_58_1332 416
24 3300036712 Ga0316584_0047782 Ga0316584_0047782_1912_3165 416
25 3300036712 Ga0316584_0102157 Ga0316584_0102157_348_1622 416
26 3300036712 Ga0316584_0050451 Ga0316584_0050451_1605_2861 417
27 3300042876 Ga0451577_0084221 Ga0451577_0084221_1465_2739 417
28 3300044712 Ga0453684_0049981 Ga0453684_0049981_1368_2642 417
29 3300049586 Ga0501070_0009045 Ga0501070_0009045_4668_5954 417
30 3300049590 Ga0501074_0000357 Ga0501074_0000357_1959_3245 417
31 3300049571 Ga0501034_0065243 Ga0501034_0065243_1735_3009 418
32 3300049822 Ga0501035_0116206 Ga0501035_0116206_218_1492 418
33 3300049823 Ga0501044_0015494 Ga0501044_0015494_3915_5189 418
34 iso_pu_bacteria 2600255067 2600810732 418
35 iso_pu_bacteria 2721755763 2723877643 418
36 3300049822 Ga0501035_0278558 Ga0501035_0278558_118_1380 419
37 iso_pu_bacteria 2643221654 2644302348 419
38 iso_pu_bacteria 2929520902 2929522466 419
39 3300036712 Ga0316584_0085095 Ga0316584_0085095_676_1944 420
40 3300031691 Ga0316579_10002325 Ga0316579_100023252 421
41 3300031691 Ga0316579_10004550 Ga0316579_100045501 421
42 3300031727 Ga0316576_10127623 Ga0316576_101276232 421
43 3300031728 Ga0316578_10050537 Ga0316578_100505372 421
44 3300031728 Ga0316578_10100671 Ga0316578_101006712 421
45 3300032133 Ga0316583_10007477 Ga0316583_100074773 421
46 3300032133 Ga0316583_10024081 Ga0316583_100240812 421
47 3300032133 Ga0316583_10054108 Ga0316583_100541081 421
48 3300032168 Ga0316593_10000976 Ga0316593_100009762 421
49 3300032168 Ga0316593_10014583 Ga0316593_100145832 421
50 3300033524 Ga0316592_1011644 Ga0316592_10116441 421
51 3300033524 Ga0316592_1014656 Ga0316592_10146561 421
52 3300033529 Ga0316587_1009262 Ga0316587_10092621 421
53 3300033541 Ga0316596_1003574 Ga0316596_10035741 421
54 3300033541 Ga0316596_1009228 Ga0316596_10092281 421
55 3300033541 Ga0316596_1023970 Ga0316596_10239701 421
56 3300035398 Ga0316574_0000037 Ga0316574_0000037_20002_21270 421
57 3300035398 Ga0316574_0001999 Ga0316574_0001999_1529_2797 421
58 3300035398 Ga0316574_0020868 Ga0316574_0020868_1651_2919 421
59 3300036647 Ga0316582_0017964 Ga0316582_0017964_2502_3770 421
60 3300036647 Ga0316582_0066473 Ga0316582_0066473_1027_2295 421
61 3300036712 Ga0316584_0034434 Ga0316584_0034434_1237_2505 421
62 3300036712 Ga0316584_0068481 Ga0316584_0068481_1201_2478 421
63 3300038725 Ga0400484_07349 Ga0400484_07349_11942_13210 421
64 3300038725 Ga0400484_36110 Ga0400484_36110_8730_9998 421
65 3300038726 Ga0400490_27890 Ga0400490_27890_15634_16902 421
66 3300038735 Ga0400485_04923 Ga0400485_04923_38716_39984 421
67 3300038741 Ga0400488_43156 Ga0400488_43156_755_2023 421
68 3300038741 Ga0400488_59189 Ga0400488_59189_2430_3698 421
69 3300038742 Ga0400486_22493 Ga0400486_22493_38579_39847 421
70 3300039062 Ga0400483_097670 Ga0400483_097670_8460_9728 421
71 3300039062 Ga0400483_128923 Ga0400483_128923_6874_8142 421
72 3300039062 Ga0400483_166230 Ga0400483_166230_6133_7401 421
73 3300039110 Ga0400487_23023 Ga0400487_23023_27362_28630 421
74 3300039110 Ga0400487_38243 Ga0400487_38243_5721_6989 421
75 3300039110 Ga0400487_48661 Ga0400487_48661_6378_7646 421
76 3300031235 Ga0265330_10003210 Ga0265330_100032106 422
77 3300031344 Ga0265316_10120373 Ga0265316_101203732 422
78 3300035398 Ga0316574_0027257 Ga0316574_0027257_1412_2689 422
79 3300038726 Ga0400490_14046 Ga0400490_14046_6038_7312 422
80 3300049579 Ga0501043_0093911 Ga0501043_0093911_876_2156 422
81 3300049580 Ga0501046_0006656 Ga0501046_0006656_1213_2493 422
82 3300049580 Ga0501046_0154484 Ga0501046_0154484_301_1572 422
83 3300049581 Ga0501047_0091419 Ga0501047_0091419_795_2075 422
84 3300049587 Ga0501071_0056206 Ga0501071_0056206_260_1531 422
85 3300049742 Ga0501080_0000348 Ga0501080_0000348_22947_24227 422
86 3300049824 Ga0501045_0046398 Ga0501045_0046398_1385_2656 422
87 3300054114 Ga0501084_0083489 Ga0501084_0083489_233_1504 422
88 3300060353 Ga0501082_0023236 Ga0501082_0023236_3035_4306 422
89 3300060353 Ga0501082_0037966 Ga0501082_0037966_303_1583 422
90 3300005366 Ga0070659_100000877 Ga0070659_1000008773 423
91 3300005367 Ga0070667_100019421 Ga0070667_1000194215 423
92 3300005548 Ga0070665_100036952 Ga0070665_1000369522 423
93 3300005564 Ga0070664_100018626 Ga0070664_1000186263 423
94 3300015262 Ga0182007_10026150 Ga0182007_100261502 423
95 3300015685 Ga0183369_1006 Ga0183369_1006129 423
96 3300025932 Ga0207690_10043860 Ga0207690_100438602 423
97 3300025945 Ga0207679_10004089 Ga0207679_100040896 423
98 3300025986 Ga0207658_10011281 Ga0207658_100112816 423
99 3300027682 Ga0209971_1003050 Ga0209971_10030502 423
100 3300027876 Ga0209974_10007052 Ga0209974_100070521 423
101 3300028379 Ga0268266_10068249 Ga0268266_100682491 423
102 3300031235 Ga0265330_10000092 Ga0265330_1000009252 423
103 3300031238 Ga0265332_10000018 Ga0265332_1000001820 423
104 3300031241 Ga0265325_10001101 Ga0265325_1000110113 423
105 3300031344 Ga0265316_10014481 Ga0265316_100144812 423
106 3300031711 Ga0265314_10000266 Ga0265314_1000026652 423
107 3300032133 Ga0316583_10002266 Ga0316583_100022663 423
108 3300035172 Ga0373955_0077920 Ga0373955_0077920_155_1543 423
109 3300037471 Ga0395905_0000585 Ga0395905_0000585_5480_6814 423
110 3300044658 Ga0466972_0000098 Ga0466972_0000098_11435_12706 423
111 3300044673 Ga0453683_0003406 Ga0453683_0003406_9726_11012 423
112 3300044712 Ga0453684_0010654 Ga0453684_0010654_3730_5004 423
113 3300044712 Ga0453684_0095127 Ga0453684_0095127_1664_2950 423
114 3300049515 Ga0501292_008127 Ga0501292_008127_81_1352 423
115 3300049581 Ga0501047_0260560 Ga0501047_0260560_145_1416 423
116 3300049759 Ga0501262_004640 Ga0501262_004640_172_1443 423
117 3300005288 Ga0065714_10065747 Ga0065714_100657473 424
118 3300006880 Ga0075429_100001348 Ga0075429_1000013488 424
119 3300013307 Ga0157372_10009315 Ga0157372_1000931511 424
120 3300025933 Ga0207706_10004386 Ga0207706_100043863 424
121 3300028666 Ga0265336_10000051 Ga0265336_1000005166 424
122 3300029957 Ga0265324_10002270 Ga0265324_100022709 424
123 3300031250 Ga0265331_10000891 Ga0265331_1000089114 424
124 3300031251 Ga0265327_10001886 Ga0265327_1000188613 424
125 3300031507 Ga0307509_10000109 Ga0307509_1000010946 424
126 3300031665 Ga0316575_10005222 Ga0316575_100052222 424
127 3300031691 Ga0316579_10013502 Ga0316579_100135022 424
128 3300031691 Ga0316579_10024341 Ga0316579_100243413 424
129 3300031731 Ga0307405_10026353 Ga0307405_100263532 424
130 3300031733 Ga0316577_10033408 Ga0316577_100334084 424
131 3300031824 Ga0307413_10004975 Ga0307413_100049754 424
132 3300031852 Ga0307410_10006722 Ga0307410_100067221 424
133 3300031901 Ga0307406_10020061 Ga0307406_100200614 424
134 3300032002 Ga0307416_100268446 Ga0307416_1002684462 424
135 3300032004 Ga0307414_10203211 Ga0307414_102032111 424
136 3300032005 Ga0307411_10002648 Ga0307411_100026484 424
137 3300032126 Ga0307415_100018734 Ga0307415_1000187344 424
138 3300032133 Ga0316583_10018439 Ga0316583_100184392 424
139 3300032137 Ga0316585_10005484 Ga0316585_100054845 424
140 3300032168 Ga0316593_10023424 Ga0316593_100234242 424
141 3300032168 Ga0316593_10030179 Ga0316593_100301791 424
142 3300033524 Ga0316592_1005267 Ga0316592_10052671 424
143 3300033528 Ga0316588_1008711 Ga0316588_10087112 424
144 3300033529 Ga0316587_1005886 Ga0316587_10058861 424
145 3300035398 Ga0316574_0017230 Ga0316574_0017230_1552_2835 424
146 3300036647 Ga0316582_0040508 Ga0316582_0040508_1279_2562 424
147 3300036647 Ga0316582_0092079 Ga0316582_0092079_590_1873 424
148 3300036712 Ga0316584_0000867 Ga0316584_0000867_497_1780 424
149 3300036712 Ga0316584_0029835 Ga0316584_0029835_1629_2912 424
150 3300036712 Ga0316584_0037834 Ga0316584_0037834_1371_2654 424
151 3300049568 Ga0501031_0007367 Ga0501031_0007367_2385_3668 424
152 3300049570 Ga0501033_0093001 Ga0501033_0093001_28_1314 424
153 3300049581 Ga0501047_0030791 Ga0501047_0030791_858_2144 424
154 3300049822 Ga0501035_0093495 Ga0501035_0093495_511_1797 424
155 3300050508 nmdc:mga09592_7260_c1 nmdc:mga09592_7260_c1_6899_8194 424
156 3300003761 Ga0055535_1005508 Ga0055535_10055083 425
157 3300005330 Ga0070690_100004686 Ga0070690_1000046864 425
158 3300005331 Ga0070670_100010301 Ga0070670_1000103015 425
159 3300005334 Ga0068869_100008787 Ga0068869_1000087872 425
160 3300005335 Ga0070666_10044724 Ga0070666_100447243 425
161 3300005338 Ga0068868_100007604 Ga0068868_1000076042 425
162 3300005339 Ga0070660_100022733 Ga0070660_1000227333 425
163 3300005340 Ga0070689_100025737 Ga0070689_1000257371 425
164 3300005354 Ga0070675_100009285 Ga0070675_1000092854 425
165 3300005355 Ga0070671_100002510 Ga0070671_1000025104 425
166 3300005367 Ga0070667_100024035 Ga0070667_1000240354 425
167 3300005459 Ga0068867_100048766 Ga0068867_1000487662 425
168 3300005543 Ga0070672_100043960 Ga0070672_1000439604 425
169 3300005548 Ga0070665_100254706 Ga0070665_1002547062 425
170 3300005563 Ga0068855_100017556 Ga0068855_1000175562 425
171 3300005616 Ga0068852_100057070 Ga0068852_1000570703 425
172 3300005616 Ga0068852_100145100 Ga0068852_1001451003 425
173 3300005617 Ga0068859_100070611 Ga0068859_1000706114 425
174 3300005618 Ga0068864_100003801 Ga0068864_1000038019 425
175 3300005834 Ga0068851_10016128 Ga0068851_100161284 425
176 3300005842 Ga0068858_100007406 Ga0068858_1000074062 425
177 3300005843 Ga0068860_100127756 Ga0068860_1001277564 425
178 3300005844 Ga0068862_100045906 Ga0068862_1000459064 425
179 3300006358 Ga0068871_100006610 Ga0068871_1000066105 425
180 3300006358 Ga0068871_100080079 Ga0068871_1000800793 425
181 3300006931 Ga0097620_100070601 Ga0097620_1000706014 425
182 3300009177 Ga0105248_10007622 Ga0105248_100076227 425
183 3300009177 Ga0105248_10215163 Ga0105248_102151632 425
184 3300013296 Ga0157374_10011997 Ga0157374_100119974 425
185 3300013306 Ga0163162_10352173 Ga0163162_103521732 425
186 3300013308 Ga0157375_10032539 Ga0157375_100325395 425
187 3300014325 Ga0163163_10026420 Ga0163163_100264204 425
188 3300014326 Ga0157380_10042734 Ga0157380_100427344 425
189 3300014745 Ga0157377_10009506 Ga0157377_100095064 425
190 3300014968 Ga0157379_10002728 Ga0157379_1000272811 425
191 3300025242 Ga0209258_100393 Ga0209258_10039319 425
192 3300025321 Ga0207656_10054168 Ga0207656_100541682 425
193 3300025903 Ga0207680_10009866 Ga0207680_100098664 425
194 3300025923 Ga0207681_10206127 Ga0207681_102061271 425
195 3300025926 Ga0207659_10002140 Ga0207659_100021402 425
196 3300025931 Ga0207644_10005006 Ga0207644_100050062 425
197 3300025931 Ga0207644_10037684 Ga0207644_100376843 425
198 3300025936 Ga0207670_10055627 Ga0207670_100556272 425
199 3300025940 Ga0207691_10105555 Ga0207691_101055552 425
200 3300025941 Ga0207711_10008664 Ga0207711_100086646 425
201 3300025942 Ga0207689_10014589 Ga0207689_100145894 425
202 3300025949 Ga0207667_10059748 Ga0207667_100597483 425
203 3300025960 Ga0207651_10003284 Ga0207651_100032845 425
204 3300025972 Ga0207668_10054216 Ga0207668_100542164 425
205 3300025986 Ga0207658_10015615 Ga0207658_100156154 425
206 3300026023 Ga0207677_10001204 Ga0207677_1000120411 425
207 3300026035 Ga0207703_10003116 Ga0207703_100031167 425
208 3300026088 Ga0207641_10005236 Ga0207641_100052364 425
209 3300026089 Ga0207648_10066282 Ga0207648_100662823 425
210 3300026095 Ga0207676_10002195 Ga0207676_100021954 425
211 3300026118 Ga0207675_100020530 Ga0207675_1000205304 425
212 3300026142 Ga0207698_10003440 Ga0207698_100034404 425
213 3300026142 Ga0207698_10136423 Ga0207698_101364233 425
214 3300028381 Ga0268264_10053160 Ga0268264_100531602 425
215 3300028786 Ga0307517_10051171 Ga0307517_100511712 425
216 3300031238 Ga0265332_10000006 Ga0265332_10000006186 425
217 3300031548 Ga0307408_100012737 Ga0307408_1000127373 425
218 3300031730 Ga0307516_10000709 Ga0307516_1000070914 425
219 3300031901 Ga0307406_10001748 Ga0307406_100017489 425
220 3300036401 Ga0373937_0060867 Ga0373937_0060867_547_1848 425
221 3300044656 Ga0466969_0000065 Ga0466969_0000065_50748_52025 425
222 3300044684 Ga0466966_0022121 Ga0466966_0022121_2264_3544 425
223 3300044712 Ga0453684_0000891 Ga0453684_0000891_55120_56406 425
224 3300045049 Ga0466959_0201935 Ga0466959_0201935_15_1295 425
225 3300045051 Ga0451576_0002533 Ga0451576_0002533_23417_24703 425
226 3300045836 Ga0466958_0083423 Ga0466958_0083423_59_1339 425

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

2

323

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
3t2y-assembly1.cif.gz_A crystal structure of sulfide:quinone oxidoreductase his132ala variant from acidithiobacillus ferrooxidans with bound disulfide 0.9693 1 404
3kpk-assembly1.cif.gz_A crystal structure of sulfide:quinone oxidoreductase from acidithiobacillus ferrooxidans, c160a mutant 0.9643 1 415
3sy4-assembly1.cif.gz_A crystal structure of sulfide:quinone oxidoreductase ser126ala variant from acidithiobacillus ferrooxidans 0.9626 2 415
3sx6-assembly1.cif.gz_A-2 crystal structure of sulfide:quinone oxidoreductase cys356ala variant from acidithiobacillus ferrooxidans complexed with decylubiquinone 0.9617 2 415
3sxi-assembly1.cif.gz_A crystal structure of sulfide:quinone oxidoreductase cys128ala variant from acidithiobacillus ferrooxidans complexed with decylubiquinone 0.9613 2 415
ID Description Score Start End Superfamily
3syiA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9622 2 415 3.50.50.100
3h27B00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9536 1 420 3.50.50.100
af_Q10062_1_488_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9534 3 36 3.50.50.60
3syiA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.9444 2 415 3.50.50.100
3h27B00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain; 0.923 1 420 3.50.50.100
ID Description Score Start End GO Terms
AF-A0A661FBV1-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.989 1 105 GO:0003955
GO:0019646
AF-T1A8C1-F1-model_v4 Sulfide-quinone reductase 0.9872 1 255 GO:0016491
AF-A0A7C5GRX3-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9864 1 114 GO:0016491
AF-L8LZ90-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9852 1 147 GO:0003955
GO:0019646
AF-A0A257P261-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9835 1 290 GO:0016491

Feature Viewer

pLDDT pTM Quality
90.23 0.89 High
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Predicted Structure (AlphaFold2)

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