|
Taxon Oid |
3300015685
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Microbial communities associated with sugarcane |
| Genome Name Sample Name |
Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 |
| Sequencing Center |
Universidade Estadual de Campinas |
| Img Genome Id |
3300015685 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Microbial communities associated with sugarcane |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.15.0 |
| Img Submission Id |
125182 |
|
Gold Analysis Project Id
|
Ga0183369
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0209507
|
|
Gold Study Id
|
Gs0127537
|
| Add Date |
04/23/2017 00:00:00 |
| Assembly Method |
SPADES |
| Comments |
released by JGI data releasing policy |
| Has Coverage |
False |
| Public Release Date |
03/03/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Rafael Souza |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Rafael Souza |
| Contact Email |
[email protected] |
| Contact Name |
Rafael Souza |
| Is Published |
False |
| Sequencing Method |
Illumina HiSeq 2500-Rapid |
| Sequencing Quality |
Level 2: High-Quality Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Geographic Location |
Campinas, São Paulo, Brazil |
| Habitat |
Root Endosphere |
| Isolation |
Sugarcane roots |
| Latitude |
-22.8187 |
| Longitude |
-47.059 |
| Sample Collection Date |
2014/1/3 |
| Host Name |
Saccharum officinarum |
| Genome Size Assembled |
9402264 |
| Gene Count Assembled |
8868 |