F317493

General Info

Members Datasets Scaffolds Average Seq Length
208 145 204 421

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100002793|Ga0070706_10000279311
Length 457
Sequence LPKASTAVSLSRASKSDNFRDNPPVPKSSYPEMPTLSDTQIRNAKPGERPLRLYDDRGLYLEVSPRGGKWCRLKYSFEGKARLLSLGTYPDTGLKAVRHKRDQARRLVAQGVDPSAARKAEKASRSEIVLNSFEAVAREWHATIHLAQVSAGHAARTLIRLEQDVFPWLGGMPIGEIKAPQLLQAMRRIEARGAIETAHRALQACGQVFRYAIATGRAERDPTPDLRGALKPVLVQHMAAITDPKRVGELLRAIESYKGMPITRAALQLAPLVFVRPGELRKAEWSEFDLNAAQWRIPAARMKRTKQEKLSGVEHVVPLSRQAVAILRELHPLTGHGRYLFPSPRTGERPMSDNGVLSALRRMGFPSDEMTGHGFRAMARTLLAERLNVDEAIIEAQLAHAVKDSLGRAYNRTQFIEQRSKMLQTWADYLDKLREGAEVIPIKRRSTSRPVRSRAKV

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 2643221585 Pelomonas sp. Root662 Isolate Unclassified
3 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
4 2643221656 Pelomonas sp. Root405 Isolate Unclassified
5 2884411467 Dyella sp. AD56 Isolate Rhizosphere
6 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
7 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
8 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
12 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
13 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
16 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
17 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
26 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
27 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
42 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
47 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
62 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
63 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
64 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
65 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
69 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
70 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
98 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
99 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
100 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
101 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
102 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
103 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
104 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
105 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
106 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
107 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
108 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
109 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
110 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
111 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
112 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
113 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
114 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
115 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
116 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
117 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
118 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
119 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
120 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
125 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
126 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
127 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
128 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
131 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
132 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
133 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
136 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
137 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
138 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
139 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
140 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
141 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
142 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
143 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
144 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
145 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.08
Metatranscriptomes 0
Isolates 1.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.17
Nodule 0
Rhizoplane 1.44
Rhizosphere 75.96
Stem 0
Stem Tuber 0
Unclassified 14.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_8313685 2162886012 Bacteria 1744
2 JGI25156J39149_1000547 3300002705 Bacteria 21595
3 JGI25154J39366_1000427 3300002738 Bacteria 22526
4 JGI25157J39369_1000392 3300002741 Bacteria 30204
5 rootH1_10016996 3300003316 Bacteria 15607
6 rootH1_10068852 3300003323 Bacteria 2966
7 rootH1_10260424 3300003323 Bacteria 1729
8 rootH1_10304317 3300003323 Bacteria 1356
9 Ga0055539_1000514 3300003752 Bacteria 11903
10 Ga0055529_1000528 3300003763 Bacteria 33027
11 Ga0065707_10093369 3300005295 Bacteria 3637
12 Ga0070670_100061818 3300005331 Plasmid 3214
13 Ga0068869_100033669 3300005334 Bacteria 3618
14 Ga0068869_100194868 3300005334 Bacteria 1595
15 Ga0070666_10008645 3300005335 Bacteria 6331
16 Ga0068868_100069693 3300005338 Bacteria 2803
17 Ga0070668_100024296 3300005347 Bacteria 4590
18 Ga0070669_100035565 3300005353 Bacteria 3609
19 Ga0070669_100177632 3300005353 Bacteria 1664
20 Ga0070675_100023784 3300005354 Bacteria 4902
21 Ga0070675_100114651 3300005354 Bacteria 2283
22 Ga0070671_100008601 3300005355 Bacteria 8182
23 Ga0070671_100030467 3300005355 Bacteria 4452
24 Ga0070673_100008848 3300005364 Bacteria 6724
25 Ga0070673_100125827 3300005364 Bacteria 2144
26 Ga0070659_100142774 3300005366 Bacteria 1949
27 Ga0070667_100034180 3300005367 Bacteria 4251
28 Ga0070678_100011636 3300005456 Bacteria 5436
29 Ga0070662_100053074 3300005457 Bacteria 2933
30 Ga0070662_100087871 3300005457 Bacteria 2328
31 Ga0068867_100048826 3300005459 Bacteria 3114
32 Ga0068867_100261339 3300005459 Unclassified 1411
33 Ga0070706_100002793 3300005467 Bacteria 17459
34 Ga0068853_100188402 3300005539 Bacteria 1873
35 Ga0068853_100272401 3300005539 Bacteria 1559
36 Ga0070672_100026364 3300005543 Bacteria 4323
37 Ga0070672_100031995 3300005543 Bacteria 3966
38 Ga0070693_100046169 3300005547 Bacteria 2472
39 Ga0068857_100260104 3300005577 Bacteria 1593
40 Ga0070702_100100566 3300005615 Bacteria 1772
41 Ga0068852_100022779 3300005616 Bacteria 5029
42 Ga0068852_100166391 3300005616 Bacteria 2063
43 Ga0068864_100020433 3300005618 Bacteria 5540
44 Ga0068864_100047951 3300005618 Bacteria 3671
45 Ga0068864_100159261 3300005618 Bacteria 2051
46 Ga0068861_100013346 3300005719 Bacteria 5749
47 Ga0068861_100085977 3300005719 Bacteria 2471
48 Ga0068863_100018939 3300005841 Bacteria 6588
49 Ga0068858_100002454 3300005842 Bacteria 18720
50 Ga0068858_100084960 3300005842 Bacteria 2944
51 Ga0068858_100164642 3300005842 Bacteria 2089
52 Ga0068858_100271023 3300005842 Bacteria 1615
53 Ga0068860_100219547 3300005843 Bacteria 1846
54 Ga0068862_100105500 3300005844 Bacteria 2470
55 Ga0075369_10043193 3300006186 Bacteria 1933
56 Ga0075366_10028368 3300006195 Bacteria 3285
57 Ga0097621_100008027 3300006237 Bacteria 7578
58 Ga0097621_100046959 3300006237 Bacteria 3496
59 Ga0097621_100068971 3300006237 Bacteria 2918
60 Ga0075370_10000062 3300006353 Bacteria 32224
61 Ga0068871_100008943 3300006358 Bacteria 7228
62 Ga0068871_100045868 3300006358 Bacteria 3519
63 Ga0068871_100130778 3300006358 Bacteria 2128
64 Ga0099795_10000038 3300007788 Bacteria 33513
65 Ga0105244_10001335 3300009036 Bacteria 20129
66 Ga0105240_10147292 3300009093 Bacteria 2808
67 Ga0111539_10432677 3300009094 Unclassified 1532
68 Ga0105248_10001590 3300009177 Bacteria 25268
69 Ga0105248_10034428 3300009177 Bacteria 5663
70 Ga0105248_10152611 3300009177 Bacteria 2606
71 Ga0105248_10359347 3300009177 Bacteria 1639
72 Ga0105238_10365929 3300009551 Bacteria 1432
73 Ga0105249_10128572 3300009553 Bacteria 2416
74 Ga0105249_10136277 3300009553 Bacteria 2349
75 Ga0099796_10000008 3300010159 Bacteria 63717
76 Ga0157374_10028400 3300013296 Bacteria 5054
77 Ga0157374_10048838 3300013296 Bacteria 3928
78 Ga0157374_10052109 3300013296 Bacteria 3810
79 Ga0157378_10028209 3300013297 Bacteria 4950
80 Ga0163162_10008991 3300013306 Bacteria 9715
81 Ga0163162_10098178 3300013306 Bacteria 3018
82 Ga0163162_10195677 3300013306 Bacteria 2150
83 Ga0157372_10060357 3300013307 Bacteria 4243
84 Ga0157375_10153196 3300013308 Bacteria 2442
85 Ga0157375_10219149 3300013308 Bacteria 2061
86 Ga0163163_10026764 3300014325 Bacteria 5516
87 Ga0163163_10117480 3300014325 Bacteria 2691
88 Ga0157380_10011342 3300014326 Bacteria 6438
89 Ga0157380_10075371 3300014326 Bacteria 2741
90 Ga0157379_10017321 3300014968 Bacteria 6349
91 Ga0157379_10059570 3300014968 Bacteria 3414
92 Ga0157379_10076196 3300014968 Bacteria 3003
93 Ga0157379_10241515 3300014968 Bacteria 1638
94 Ga0157376_10014732 3300014969 Bacteria 5881
95 Ga0157376_10033336 3300014969 Bacteria 4146
96 Ga0182005_1000018 3300015265 Bacteria 324307
97 Ga0163161_10052243 3300017792 Bacteria 2962
98 Ga0209646_1000115 3300025246 Bacteria 152389
99 Ga0209026_1000115 3300025250 Bacteria 136234
100 Ga0209677_100219 3300025253 Bacteria 41520
101 Ga0209759_1000920 3300025256 Bacteria 21646
102 Ga0209233_1002480 3300025261 Bacteria 6758
103 Ga0207697_10064774 3300025315 Bacteria 1524
104 Ga0207682_10008458 3300025893 Bacteria 4069
105 Ga0207680_10002882 3300025903 Bacteria 8061
106 Ga0207681_10027512 3300025923 Bacteria 3677
107 Ga0207659_10012819 3300025926 Bacteria 5353
108 Ga0207659_10071592 3300025926 Bacteria 2532
109 Ga0207644_10000492 3300025931 Bacteria 25386
110 Ga0207644_10030506 3300025931 Bacteria 3750
111 Ga0207706_10003957 3300025933 Bacteria 14039
112 Ga0207706_10159898 3300025933 Bacteria 1980
113 Ga0207691_10039109 3300025940 Bacteria 4389
114 Ga0207691_10140271 3300025940 Unclassified 2130
115 Ga0207711_10000924 3300025941 Bacteria 28323
116 Ga0207711_10012422 3300025941 Bacteria 7078
117 Ga0207711_10016648 3300025941 Bacteria 6106
118 Ga0207711_10036258 3300025941 Bacteria 4184
119 Ga0207711_10098062 3300025941 Bacteria 2589
120 Ga0207689_10083366 3300025942 Bacteria 2628
121 Ga0207679_10160089 3300025945 Bacteria 1842
122 Ga0207667_10006525 3300025949 Bacteria 14109
123 Ga0207651_10001308 3300025960 Bacteria 11234
124 Ga0207712_10074168 3300025961 Bacteria 2456
125 Ga0207658_10031089 3300025986 Bacteria 3788
126 Ga0207677_10006671 3300026023 Bacteria 6339
127 Ga0207703_10009583 3300026035 Bacteria 7605
128 Ga0207703_10207164 3300026035 Bacteria 1746
129 Ga0207639_10018704 3300026041 Bacteria 4926
130 Ga0207641_10012629 3300026088 Bacteria 6926
131 Ga0207648_10068420 3300026089 Bacteria 3094
132 Ga0207648_10216349 3300026089 Bacteria 1702
133 Ga0207676_10001822 3300026095 Bacteria 15609
134 Ga0207676_10035559 3300026095 Bacteria 3782
135 Ga0207676_10110928 3300026095 Bacteria 2295
136 Ga0207674_10051666 3300026116 Bacteria 4194
137 Ga0207675_100214609 3300026118 Bacteria 1852
138 Ga0207683_10027587 3300026121 Bacteria 4906
139 Ga0207683_10039238 3300026121 Bacteria 4131
140 Ga0207698_10034620 3300026142 Bacteria 3684
141 Ga0207698_10097159 3300026142 Bacteria 2430
142 Ga0207698_10181516 3300026142 Bacteria 1865
143 Ga0209179_1000002 3300027512 Bacteria 124932
144 Ga0268264_10053884 3300028381 Bacteria 3357
145 Ga0265336_10000122 3300028666 Bacteria 58047
146 Ga0307517_10003263 3300028786 Bacteria 25366
147 Ga0307515_10167951 3300028794 Bacteria 2202
148 Ga0307512_10118382 3300030522 Unclassified 1713
149 Ga0307513_10193874 3300031456 Bacteria 1880
150 Ga0307509_10000887 3300031507 Bacteria 51291
151 Ga0307509_10005169 3300031507 Bacteria 18309
152 Ga0307508_10060874 3300031616 Plasmid 3337
153 Ga0307516_10002083 3300031730 Bacteria 27216
154 Ga0307510_10056238 3300033180 Bacteria 4100
155 Ga0307510_10172354 3300033180 Bacteria 1740
156 Ga0373931_0005502 3300035691 Bacteria 5866
157 Ga0373931_0008957 3300035691 Bacteria 4770
158 Ga0373937_0069348 3300036401 Bacteria 3251
159 Ga0395899_0004744 3300037312 Bacteria 10602
160 Ga0395900_0007381 3300037418 Bacteria 11364
161 Ga0395900_0009603 3300037418 Bacteria 9920
162 Ga0395898_0009661 3300037466 Bacteria 10125
163 Ga0395898_0071501 3300037466 Bacteria 3352
164 Ga0395905_0207390 3300037471 Bacteria 1837
165 Ga0395901_0003093 3300038443 Bacteria 16737
166 Ga0395901_0008881 3300038443 Bacteria 10174
167 Ga0400488_53410 3300038741 Bacteria 1366
168 Ga0400486_21953 3300038742 Bacteria 5525
169 Ga0400483_164360 3300039062 Bacteria 2424
170 Ga0400483_201195 3300039062 Bacteria 2807
171 Ga0400487_44624 3300039110 Bacteria 6590
172 Ga0450918_000335 3300042531 Bacteria 10515
173 Ga0453683_0151192 3300044673 Bacteria 1467
174 Ga0466966_0003592 3300044684 Bacteria 10237
175 Ga0466966_0043687 3300044684 Bacteria 2871
176 Ga0466961_0071911 3300044693 Unclassified 2194
177 Ga0453684_0035917 3300044712 Bacteria 6839
178 Ga0466971_0000272 3300044719 Bacteria 19879
179 Ga0451576_0328622 3300045051 Bacteria 1600
180 Ga0466958_0008895 3300045836 Bacteria 5577
181 Ga0495592_0000140 3300046454 Bacteria 63848
182 Ga0495610_0000004 3300046512 Bacteria 1006135
183 Ga0495636_0001138 3300047318 Bacteria 10021
184 Ga0495687_000262 3300047443 Bacteria 70886
185 Ga0495686_0002747 3300047472 Bacteria 16082
186 Ga0496102_0002375 3300048905 Bacteria 16066
187 Ga0496106_0184474 3300048909 Bacteria 1657
188 Ga0496109_0251014 3300048912 Bacteria 1666
189 Ga0496117_0231138 3300048920 Bacteria 1022
190 Ga0496121_0018955 3300048924 Bacteria 6904
191 Ga0495678_001532 3300049459 Bacteria 17853
192 Ga0501198_000042 3300049649 Bacteria 45595
193 Ga0501222_000099 3300049662 Bacteria 22061
194 nmdc:mga0k408_16695_c1 3300050493 Bacteria 4079
195 nmdc:mga0k408_4808_c1 3300050493 Bacteria 7165
196 nmdc:mga0k408_58440_c1 3300050493 Bacteria 2240
197 nmdc:mga0k408_6932_c1 3300050493 Bacteria 6043
198 nmdc:mga06z11_17782_c1 3300050494 Bacteria 3235
199 nmdc:mga07m45_62_c1 3300050496 Bacteria 36323
200 nmdc:mga0sz30_44704_c1 3300050516 Bacteria 1867
201 Ga0500651_0084921 3300053093 Bacteria 1957
202 Ga0500559_0000262 3300053136 Bacteria 41173
203 Ga0500587_000594 3300053739 Bacteria 4512
204 Ga0466962_0001167 3300061719 Bacteria 12087

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048920 Ga0496117_0231138 Ga0496117_0231138_34_999 321
2 3300009093 Ga0105240_10147292 Ga0105240_101472922 337
3 3300003323 rootH1_10304317 rootH1_103043171 342
4 3300044719 Ga0466971_0000272 Ga0466971_0000272_5534_6643 345
5 3300061719 Ga0466962_0001167 Ga0466962_0001167_5633_6742 345
6 3300038741 Ga0400488_53410 Ga0400488_53410_84_1136 350
7 3300005842 Ga0068858_100271023 Ga0068858_1002710231 358
8 3300025945 Ga0207679_10160089 Ga0207679_101600891 358
9 3300046512 Ga0495610_0000004 Ga0495610_0000004_572443_573555 367
10 3300050493 nmdc:mga0k408_16695_c1 nmdc:mga0k408_16695_c1_2577_3800 370
11 3300005539 Ga0068853_100188402 Ga0068853_1001884021 382
12 3300042531 Ga0450918_000335 Ga0450918_000335_2880_4061 383
13 3300031730 Ga0307516_10002083 Ga0307516_1000208316 387
14 3300036401 Ga0373937_0069348 Ga0373937_0069348_881_2095 389
15 3300037466 Ga0395898_0071501 Ga0395898_0071501_290_1474 394
16 3300038443 Ga0395901_0003093 Ga0395901_0003093_15264_16448 394
17 3300050493 nmdc:mga0k408_6932_c1 nmdc:mga0k408_6932_c1_22_1239 396
18 3300025261 Ga0209233_1002480 Ga0209233_10024802 399
19 3300005547 Ga0070693_100046169 Ga0070693_1000461691 400
20 3300005616 Ga0068852_100022779 Ga0068852_1000227792 400
21 3300009177 Ga0105248_10152611 Ga0105248_101526112 400
22 3300013306 Ga0163162_10008991 Ga0163162_100089911 400
23 3300025941 Ga0207711_10098062 Ga0207711_100980622 400
24 3300026142 Ga0207698_10097159 Ga0207698_100971592 400
25 iso_pu_bacteria 2884411467 2884414087 400
26 3300002705 JGI25156J39149_1000547 JGI25156J39149_100054712 401
27 3300002738 JGI25154J39366_1000427 JGI25154J39366_100042711 401
28 3300002741 JGI25157J39369_1000392 JGI25157J39369_100039211 401
29 3300003752 Ga0055539_1000514 Ga0055539_10005149 401
30 3300025246 Ga0209646_1000115 Ga0209646_100011520 401
31 3300025250 Ga0209026_1000115 Ga0209026_1000115112 401
32 3300025253 Ga0209677_100219 Ga0209677_10021925 401
33 3300025256 Ga0209759_1000920 Ga0209759_100092012 401
34 3300035691 Ga0373931_0005502 Ga0373931_0005502_1994_3286 401
35 3300038742 Ga0400486_21953 Ga0400486_21953_3763_5010 402
36 3300039062 Ga0400483_164360 Ga0400483_164360_970_2217 402
37 3300006353 Ga0075370_10000062 Ga0075370_1000006234 403
38 3300009177 Ga0105248_10001590 Ga0105248_100015908 403
39 3300025941 Ga0207711_10000924 Ga0207711_100009248 403
40 3300037312 Ga0395899_0004744 Ga0395899_0004744_8986_10209 403
41 3300037418 Ga0395900_0009603 Ga0395900_0009603_281_1504 403
42 3300037466 Ga0395898_0009661 Ga0395898_0009661_394_1617 403
43 3300038443 Ga0395901_0008881 Ga0395901_0008881_394_1617 403
44 3300039062 Ga0400483_201195 Ga0400483_201195_1370_2629 403
45 3300044712 Ga0453684_0035917 Ga0453684_0035917_5206_6465 403
46 3300050496 nmdc:mga07m45_62_c1 nmdc:mga07m45_62_c1_4326_5588 403
47 3300037471 Ga0395905_0207390 Ga0395905_0207390_101_1324 404
48 3300039110 Ga0400487_44624 Ga0400487_44624_4996_6255 404
49 3300048905 Ga0496102_0002375 Ga0496102_0002375_384_1631 404
50 3300003323 rootH1_10068852 rootH1_100688522 405
51 3300003763 Ga0055529_1000528 Ga0055529_10005282 405
52 3300015265 Ga0182005_1000018 Ga0182005_100001897 405
53 3300026041 Ga0207639_10018704 Ga0207639_100187043 405
54 3300044684 Ga0466966_0003592 Ga0466966_0003592_617_1849 405
55 3300047318 Ga0495636_0001138 Ga0495636_0001138_8526_9767 405
56 3300003316 rootH1_10016996 rootH1_1001699627 406
57 3300005842 Ga0068858_100084960 Ga0068858_1000849602 406
58 3300007788 Ga0099795_10000038 Ga0099795_1000003811 406
59 3300009036 Ga0105244_10001335 Ga0105244_100013353 406
60 3300010159 Ga0099796_10000008 Ga0099796_1000000831 406
61 3300025949 Ga0207667_10006525 Ga0207667_1000652516 406
62 3300027512 Ga0209179_1000002 Ga0209179_100000246 406
63 3300044673 Ga0453683_0151192 Ga0453683_0151192_126_1376 406
64 3300048924 Ga0496121_0018955 Ga0496121_0018955_5326_6567 406
65 3300049459 Ga0495678_001532 Ga0495678_001532_1142_2389 406
66 3300005354 Ga0070675_100114651 Ga0070675_1001146512 409
67 3300005366 Ga0070659_100142774 Ga0070659_1001427741 409
68 3300005457 Ga0070662_100087871 Ga0070662_1000878711 409
69 3300005615 Ga0070702_100100566 Ga0070702_1001005661 409
70 3300005616 Ga0068852_100166391 Ga0068852_1001663911 409
71 3300005618 Ga0068864_100159261 Ga0068864_1001592611 409
72 3300006358 Ga0068871_100130778 Ga0068871_1001307782 409
73 3300009551 Ga0105238_10365929 Ga0105238_103659291 409
74 3300013306 Ga0163162_10195677 Ga0163162_101956771 409
75 3300013308 Ga0157375_10219149 Ga0157375_102191492 409
76 3300014968 Ga0157379_10241515 Ga0157379_102415151 409
77 3300025315 Ga0207697_10064774 Ga0207697_100647742 409
78 3300025926 Ga0207659_10071592 Ga0207659_100715921 409
79 3300025933 Ga0207706_10003957 Ga0207706_100039571 409
80 3300026095 Ga0207676_10110928 Ga0207676_101109281 409
81 3300026142 Ga0207698_10181516 Ga0207698_101815162 409
82 3300035691 Ga0373931_0008957 Ga0373931_0008957_3114_4406 409
83 iso_pu_bacteria 2643221639 2644221143 409
84 3300005719 Ga0068861_100013346 Ga0068861_1000133461 410
85 3300026118 Ga0207675_100214609 Ga0207675_1002146092 410
86 3300003323 rootH1_10260424 rootH1_102604241 412
87 3300005577 Ga0068857_100260104 Ga0068857_1002601041 412
88 3300026116 Ga0207674_10051666 Ga0207674_100516661 412
89 3300037418 Ga0395900_0007381 Ga0395900_0007381_517_1785 412
90 3300005842 Ga0068858_100164642 Ga0068858_1001646423 413
91 3300014968 Ga0157379_10059570 Ga0157379_100595705 413
92 3300025940 Ga0207691_10140271 Ga0207691_101402713 413
93 3300026035 Ga0207703_10207164 Ga0207703_102071641 413
94 3300044684 Ga0466966_0043687 Ga0466966_0043687_284_1576 413
95 3300044693 Ga0466961_0071911 Ga0466961_0071911_205_1497 413
96 3300045836 Ga0466958_0008895 Ga0466958_0008895_581_1873 413
97 iso_pu_bacteria 2643221585 2643935126 413
98 iso_pu_bacteria 2643221656 2644316613 413
99 3300005334 Ga0068869_100194868 Ga0068869_1001948682 414
100 3300005353 Ga0070669_100177632 Ga0070669_1001776321 414
101 3300005355 Ga0070671_100008601 Ga0070671_10000860110 414
102 3300005364 Ga0070673_100125827 Ga0070673_1001258272 414
103 3300005459 Ga0068867_100261339 Ga0068867_1002613391 414
104 3300005539 Ga0068853_100272401 Ga0068853_1002724011 414
105 3300006186 Ga0075369_10043193 Ga0075369_100431932 414
106 3300006195 Ga0075366_10028368 Ga0075366_100283682 414
107 3300006237 Ga0097621_100068971 Ga0097621_1000689711 414
108 3300009094 Ga0111539_10432677 Ga0111539_104326771 414
109 3300009177 Ga0105248_10359347 Ga0105248_103593471 414
110 3300013296 Ga0157374_10028400 Ga0157374_100284001 414
111 3300013296 Ga0157374_10048838 Ga0157374_100488384 414
112 3300013307 Ga0157372_10060357 Ga0157372_100603572 414
113 3300014325 Ga0163163_10117480 Ga0163163_101174801 414
114 3300014968 Ga0157379_10076196 Ga0157379_100761963 414
115 3300014969 Ga0157376_10033336 Ga0157376_100333364 414
116 3300025931 Ga0207644_10000492 Ga0207644_1000049222 414
117 3300025941 Ga0207711_10012422 Ga0207711_100124224 414
118 3300025942 Ga0207689_10083366 Ga0207689_100833661 414
119 3300028666 Ga0265336_10000122 Ga0265336_1000012238 414
120 3300028794 Ga0307515_10167951 Ga0307515_101679512 414
121 3300030522 Ga0307512_10118382 Ga0307512_101183822 414
122 3300031456 Ga0307513_10193874 Ga0307513_101938741 414
123 3300031507 Ga0307509_10005169 Ga0307509_1000516910 414
124 3300031616 Ga0307508_10060874 Ga0307508_100608741 414
125 3300033180 Ga0307510_10172354 Ga0307510_101723541 414
126 3300045051 Ga0451576_0328622 Ga0451576_0328622_81_1325 414
127 3300046454 Ga0495592_0000140 Ga0495592_0000140_8880_10460 414
128 3300047443 Ga0495687_000262 Ga0495687_000262_69279_70583 414
129 3300048909 Ga0496106_0184474 Ga0496106_0184474_208_1500 414
130 3300048912 Ga0496109_0251014 Ga0496109_0251014_234_1526 414
131 3300049649 Ga0501198_000042 Ga0501198_000042_13920_15215 414
132 3300049662 Ga0501222_000099 Ga0501222_000099_13922_15217 414
133 3300050493 nmdc:mga0k408_4808_c1 nmdc:mga0k408_4808_c1_415_1722 414
134 3300050516 nmdc:mga0sz30_44704_c1 nmdc:mga0sz30_44704_c1_254_1561 414
135 3300053093 Ga0500651_0084921 Ga0500651_0084921_135_1415 414
136 3300053136 Ga0500559_0000262 Ga0500559_0000262_19968_21248 414
137 3300053739 Ga0500587_000594 Ga0500587_000594_3131_4411 414
138 3300009553 Ga0105249_10136277 Ga0105249_101362772 415
139 3300014326 Ga0157380_10011342 Ga0157380_100113424 415
140 3300050494 nmdc:mga06z11_17782_c1 nmdc:mga06z11_17782_c1_1672_2949 415
141 3300005295 Ga0065707_10093369 Ga0065707_100933691 416
142 3300005543 Ga0070672_100026364 Ga0070672_1000263645 416
143 3300026089 Ga0207648_10216349 Ga0207648_102163491 416
144 3300028786 Ga0307517_10003263 Ga0307517_100032631 416
145 3300031507 Ga0307509_10000887 Ga0307509_1000088740 416
146 3300033180 Ga0307510_10056238 Ga0307510_100562383 416
147 3300047472 Ga0495686_0002747 Ga0495686_0002747_86_1393 416
148 3300050493 nmdc:mga0k408_58440_c1 nmdc:mga0k408_58440_c1_232_1578 416
149 3300005331 Ga0070670_100061818 Ga0070670_1000618184 417
150 3300005467 Ga0070706_100002793 Ga0070706_10000279311 417
151 3300005618 Ga0068864_100047951 Ga0068864_1000479515 417
152 3300006237 Ga0097621_100008027 Ga0097621_1000080272 417
153 3300006358 Ga0068871_100045868 Ga0068871_1000458685 417
154 3300025893 Ga0207682_10008458 Ga0207682_100084581 417
155 3300025941 Ga0207711_10016648 Ga0207711_100166485 417
156 3300026095 Ga0207676_10035559 Ga0207676_100355591 417
157 3300026121 Ga0207683_10027587 Ga0207683_100275871 417
158 2162886012 MBSR1b_contig_8313685 MBSR1b_0491.00004000 418
159 3300005334 Ga0068869_100033669 Ga0068869_1000336692 418
160 3300005335 Ga0070666_10008645 Ga0070666_100086454 418
161 3300005338 Ga0068868_100069693 Ga0068868_1000696933 418
162 3300005347 Ga0070668_100024296 Ga0070668_1000242961 418
163 3300005353 Ga0070669_100035565 Ga0070669_1000355655 418
164 3300005354 Ga0070675_100023784 Ga0070675_1000237846 418
165 3300005355 Ga0070671_100030467 Ga0070671_1000304671 418
166 3300005364 Ga0070673_100008848 Ga0070673_1000088489 418
167 3300005367 Ga0070667_100034180 Ga0070667_1000341801 418
168 3300005456 Ga0070678_100011636 Ga0070678_1000116365 418
169 3300005457 Ga0070662_100053074 Ga0070662_1000530742 418
170 3300005459 Ga0068867_100048826 Ga0068867_1000488265 418
171 3300005543 Ga0070672_100031995 Ga0070672_1000319953 418
172 3300005618 Ga0068864_100020433 Ga0068864_1000204337 418
173 3300005719 Ga0068861_100085977 Ga0068861_1000859772 418
174 3300005841 Ga0068863_100018939 Ga0068863_1000189392 418
175 3300005842 Ga0068858_100002454 Ga0068858_10000245410 418
176 3300005843 Ga0068860_100219547 Ga0068860_1002195471 418
177 3300005844 Ga0068862_100105500 Ga0068862_1001055001 418
178 3300006237 Ga0097621_100046959 Ga0097621_1000469594 418
179 3300006358 Ga0068871_100008943 Ga0068871_10000894311 418
180 3300009177 Ga0105248_10034428 Ga0105248_100344284 418
181 3300009553 Ga0105249_10128572 Ga0105249_101285721 418
182 3300013296 Ga0157374_10052109 Ga0157374_100521092 418
183 3300013297 Ga0157378_10028209 Ga0157378_100282094 418
184 3300013306 Ga0163162_10098178 Ga0163162_100981784 418
185 3300013308 Ga0157375_10153196 Ga0157375_101531963 418
186 3300014325 Ga0163163_10026764 Ga0163163_100267641 418
187 3300014326 Ga0157380_10075371 Ga0157380_100753714 418
188 3300014968 Ga0157379_10017321 Ga0157379_100173215 418
189 3300014969 Ga0157376_10014732 Ga0157376_100147328 418
190 3300017792 Ga0163161_10052243 Ga0163161_100522434 418
191 3300025903 Ga0207680_10002882 Ga0207680_100028825 418
192 3300025923 Ga0207681_10027512 Ga0207681_100275121 418
193 3300025926 Ga0207659_10012819 Ga0207659_100128191 418
194 3300025931 Ga0207644_10030506 Ga0207644_100305064 418
195 3300025933 Ga0207706_10159898 Ga0207706_101598981 418
196 3300025940 Ga0207691_10039109 Ga0207691_100391092 418
197 3300025941 Ga0207711_10036258 Ga0207711_100362586 418
198 3300025960 Ga0207651_10001308 Ga0207651_1000130810 418
199 3300025961 Ga0207712_10074168 Ga0207712_100741683 418
200 3300025986 Ga0207658_10031089 Ga0207658_100310896 418
201 3300026023 Ga0207677_10006671 Ga0207677_100066719 418
202 3300026035 Ga0207703_10009583 Ga0207703_100095838 418
203 3300026088 Ga0207641_10012629 Ga0207641_100126299 418
204 3300026089 Ga0207648_10068420 Ga0207648_100684201 418
205 3300026095 Ga0207676_10001822 Ga0207676_100018226 418
206 3300026121 Ga0207683_10039238 Ga0207683_100392381 418
207 3300026142 Ga0207698_10034620 Ga0207698_100346202 418
208 3300028381 Ga0268264_10053884 Ga0268264_100538841 418

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

133

229

0.99

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

36

121

0.95

PF00589

Phage_integrase

Phage integrase family

241

417

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.9851 4 85
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9648 4 78
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9607 4 78
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9288 4 78
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.924 4 78
ID Description Score Start End Superfamily
3ju0A00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9851 4 85 3.30.160.390
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9837 30 88 3.30.160.390
af_P32053_7_95_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9741 5 88 3.30.160.390
af_P37326_1_84_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9644 5 86 3.30.160.390
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9607 4 78 3.30.160.390
ID Description Score Start End GO Terms
AF-A0A1W9USZ0-F1-model_v4 Integrase 0.9995 5 85 GO:0015074
AF-A0A5R2N9Z7-F1-model_v4 DUF4102 domain-containing protein 0.997 4 83 GO:0015074
AF-A0A855SN59-F1-model_v4 deleted 0.9968 4 83
AF-A0A1E4HWP0-F1-model_v4 PAC domain-containing protein 0.9951 4 88 GO:0015074
AF-A0A2X3D8R9-F1-model_v4 Phage integrase family protein 0.9923 4 74 GO:0015074

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pLDDT pTM Quality
87.83 0.66 Medium
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Predicted Structure (AlphaFold2)

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