|
Taxon Oid |
3300007788
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling |
| Genome Name Sample Name |
Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300007788 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.10.2 |
| Img Submission Id |
78513 |
|
Gold Analysis Project Id
|
Ga0099795
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0123908
|
|
Gold Study Id
|
Gs0114434
|
| Add Date |
04/29/2016 00:00:00 |
| Assembly Method |
MEGAHIT v. 1.0.3 |
| Has Coverage |
True |
| Public Release Date |
06/29/2016 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
James Bishop; Jill Banfield; Mary Firestone; Todd Dawson; William Dietrich |
| Contact Email |
[email protected] |
| Contact Name |
Jill Banfield |
| Award Doi |
10.46936/10.25585/60000754 |
| Funding Program |
CSP |
| Funding Year |
2015 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA375156 |
| Ncbi Biosample Accession |
SAMN06343691 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Elevation In Meters |
475.000000 |
| Geographic Location |
USA: California, Eel River Critical Zone Observatory |
| Habitat |
Vadose zone soil |
| Isolation |
Vadose zone soil |
| Isolation Country |
8855 |
| Latitude |
39.7291 |
| Longitude |
-123.642 |
| Sample Collection Date |
2014/10/27 |
| Host Name |
Douglas Fir (Pseudotsuga menziesii) and Madrone trees (Arbutus menziesii) are the two dominant tree species at the site |
| Genome Size Assembled |
789065644 |
| Gene Count Assembled |
1639228 |