F213187

General Info

Members Datasets Scaffolds Average Seq Length
152 133 124 213

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10006849|rootH1_100068497
Length 248
Sequence MIVDASSTHILRSGARQQGFWQLGSSCPDNQGLKMSIGIIGAGALGSNLARLLAKSGISAKISNSRGPETLAGLEKELAPHIKAVTTEEAASADIVVIGVRWVDVERVTGSLPAWNNRIVIDATNPVEFLDPDSPDAKDPSNPLAAYGIKAVDLGGKHSTQVVRQYLPGARVVKAFNHFDVTTLAEPNLSGGQRVLFYSGDDADAKGELRKLIEATGYFPVDLGALDVGGPLASLPFGTLAAINFVKV

Samples

Sample ID Description Type Environment
1 2508501042 Bradyrhizobium sp. WSM1253 Isolate Nodule
2 2515154114 Rhizobium ruizarguesonis Vh3 Isolate Nodule
3 2547132374 Acidovorax radicis N35 Isolate Unclassified
4 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
5 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
6 2643221570 Acidovorax sp. Root568 Isolate Unclassified
7 2643221652 Acidovorax sp. Root402 Isolate Unclassified
8 2643221717 Acidovorax sp. Root267 Isolate Unclassified
9 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
10 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
11 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
12 2744054900 Paraburkholderia ginsengiterrae DCY85-1 Isolate Unclassified
13 2744054901 Paraburkholderia ginsengiterrae DCY85 Isolate Unclassified
14 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
15 2826581358 Pseudomonas viridiflava CDRTc14 Isolate Unclassified
16 2842805378 Pseudomonas sp. R-72599 Isolate Unclassified
17 2842815866 Pseudomonas sp. R-72210 Isolate Unclassified
18 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
19 2857564685 Duganella sp. R-74599 Isolate Unclassified
20 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
21 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
22 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
23 2935984226 Bradyrhizobium sp. i1.15.2 Isolate Nodule
24 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
25 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
26 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
27 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
28 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
29 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
30 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
31 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
32 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
33 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
34 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
35 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
36 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
37 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
38 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
39 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
44 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
45 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
70 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
71 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
72 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
73 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
74 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
75 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
79 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
80 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
81 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
82 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
87 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
88 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
89 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
92 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
93 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
94 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
95 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
96 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
97 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
101 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
102 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
105 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
109 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
110 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
111 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
112 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
116 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
119 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
120 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
121 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
122 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
123 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
124 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
125 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
126 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
127 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
128 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
129 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
130 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
131 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
132 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
133 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.58
Metatranscriptomes 0
Isolates 18.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.03
Nodule 7.24
Rhizoplane 3.95
Rhizosphere 43.42
Stem 0
Stem Tuber 0
Unclassified 22.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1003105 3300002737 Bacteria 5283
2 rootH1_10006849 3300003323 Bacteria 11809
3 Ga0055524_1017316 3300003775 Bacteria 2546
4 Ga0055528_1002017 3300003790 Bacteria 11373
5 Ga0065712_10067756 3300005290 Bacteria 55017
6 Ga0070668_100913060 3300005347 Bacteria 785
7 Ga0070707_100452836 3300005468 Bacteria 1244
8 Ga0070699_100719292 3300005518 Bacteria 912
9 Ga0070697_100004166 3300005536 Bacteria 11077
10 Ga0075363_100009463 3300006048 Bacteria 4581
11 Ga0070716_100042389 3300006173 Bacteria 2541
12 Ga0075366_10017532 3300006195 Bacteria 4121
13 Ga0075434_100829307 3300006871 Bacteria 941
14 Ga0075436_100030727 3300006914 Bacteria 3697
15 Ga0075435_100075160 3300007076 Bacteria 2766
16 Ga0099794_10332211 3300007265 Unclassified 789
17 Ga0099795_10139842 3300007788 Bacteria 984
18 Ga0114129_10639700 3300009147 Bacteria 1374
19 Ga0099796_10030631 3300010159 Bacteria 1747
20 Ga0163162_10058310 3300013306 Plasmid 3889
21 Ga0163161_10015691 3300017792 Bacteria 5283
22 Ga0209437_104339 3300025233 Bacteria 2510
23 Ga0209673_1000055 3300025273 Bacteria 272768
24 Ga0209564_1005016 3300025295 Bacteria 7767
25 Ga0209256_1002772 3300025299 Bacteria 13490
26 Ga0207646_10699065 3300025922 Bacteria 907
27 Ga0207665_10022460 3300025939 Bacteria 4151
28 Ga0207668_10905235 3300025972 Bacteria 785
29 Ga0207676_10075864 3300026095 Bacteria 2714
30 Ga0209179_1069110 3300027512 Unclassified 772
31 Ga0209974_10098535 3300027876 Bacteria 1020
32 Ga0307515_10002444 3300028794 Bacteria 40447
33 Ga0307515_10055210 3300028794 Bacteria 5811
34 Ga0307513_10238398 3300031456 Bacteria 1626
35 Ga0307408_100000167 3300031548 Bacteria 73538
36 Ga0307408_100594503 3300031548 Bacteria 982
37 Ga0307508_10055956 3300031616 Bacteria 3494
38 Ga0307516_10001957 3300031730 Bacteria 28200
39 Ga0307516_10028677 3300031730 Bacteria 5631
40 Ga0307516_10060324 3300031730 Bacteria 3686
41 Ga0307405_10336011 3300031731 Bacteria 1159
42 Ga0307406_10002338 3300031901 Bacteria 10300
43 Ga0307412_10000709 3300031911 Bacteria 19207
44 Ga0307414_10886222 3300032004 Bacteria 817
45 Ga0307510_10106396 3300033180 Bacteria 2569
46 Ga0436361_0085170 3300039447 Bacteria 800
47 Ga0451798_1032345 3300041458 Bacteria 1007
48 Ga0451833_0681917 3300041491 Bacteria 8721
49 Ga0451841_0849733 3300041498 Bacteria 1195
50 Ga0451849_0432838 3300041505 Bacteria 2047
51 Ga0451853_0654686 3300041512 Bacteria 3446
52 Ga0451853_1518279 3300041512 Bacteria 1801
53 Ga0451853_2180608 3300041512 Bacteria 4752
54 Ga0451853_3333494 3300041512 Bacteria 1195
55 Ga0453684_0104152 3300044712 Bacteria 3464
56 Ga0451576_0179978 3300045051 Bacteria 2207
57 Ga0495627_000008 3300046453 Bacteria 572150
58 Ga0495590_0016569 3300046457 Bacteria 2660
59 Ga0495629_0122134 3300046459 Bacteria 1814
60 Ga0495580_0004870 3300046472 Bacteria 11227
61 Ga0495610_0072010 3300046512 Bacteria 1610
62 Ga0495632_0004981 3300046519 Bacteria 8898
63 Ga0495642_0020553 3300046528 Bacteria 2594
64 Ga0495652_0025085 3300046529 Bacteria 5276
65 Ga0495652_0265432 3300046529 Bacteria 1265
66 Ga0495654_0089335 3300046530 Bacteria 1432
67 Ga0495597_0032790 3300046542 Bacteria 2356
68 Ga0495622_0020291 3300046557 Bacteria 3094
69 Ga0495668_0074851 3300046616 Bacteria 1859
70 Ga0495625_0002298 3300046660 Bacteria 20928
71 Ga0495625_0043355 3300046660 Bacteria 3263
72 Ga0495625_0051453 3300046660 Bacteria 2953
73 Ga0495635_0321867 3300046663 Bacteria 1035
74 Ga0495588_0021017 3300046674 Bacteria 3213
75 Ga0495588_0074093 3300046674 Bacteria 1773
76 Ga0495669_0006140 3300046684 Bacteria 5010
77 Ga0495624_0449759 3300046690 Bacteria 772
78 Ga0495649_0001211 3300046694 Bacteria 19901
79 Ga0495600_0287591 3300046809 Bacteria 1039
80 Ga0495672_0162790 3300047320 Unclassified 1145
81 Ga0495687_011104 3300047443 Bacteria 4869
82 Ga0495686_0111515 3300047472 Bacteria 1640
83 Ga0495626_0022541 3300048091 Bacteria 3108
84 Ga0496101_0009272 3300048904 Bacteria 6462
85 Ga0496102_0001828 3300048905 Bacteria 18368
86 Ga0496104_0083196 3300048907 Bacteria 3052
87 Ga0496105_0216147 3300048908 Bacteria 1561
88 Ga0496107_0504277 3300048910 Bacteria 897
89 Ga0496120_0044481 3300048923 Bacteria 2579
90 Ga0496121_0070450 3300048924 Bacteria 2816
91 Ga0496124_0000191 3300048927 Bacteria 121192
92 Ga0501223_030730 3300049663 Bacteria 1045
93 Ga0501266_000473 3300049763 Bacteria 5306
94 Ga0501266_000838 3300049763 Bacteria 4008
95 nmdc:mga03n38_4957_c1 3300050490 Bacteria 4474
96 nmdc:mga00v17_25409_c1 3300050491 Bacteria 3443
97 nmdc:mga0k408_22277_c1 3300050493 Bacteria 3567
98 nmdc:mga0k408_317465_c1 3300050493 Bacteria 930
99 nmdc:mga0k408_338961_c1 3300050493 Bacteria 897
100 nmdc:mga0k408_57478_c1 3300050493 Unclassified 2258
101 nmdc:mga05p37_1313603_c1 3300050507 Bacteria 736
102 nmdc:mga0n895_710676_c1 3300050512 Bacteria 1000
103 nmdc:mga08x19_26970_c1 3300050514 Bacteria 3590
104 Ga0495619_0068760 3300053085 Bacteria 2367
105 Ga0500578_0145333 3300053086 Bacteria 1480
106 Ga0500647_0007114 3300053091 Bacteria 4780
107 Ga0500557_000004 3300053105 Bacteria 202318
108 Ga0500595_002845 3300053119 Bacteria 8313
109 Ga0500608_104543 3300053122 Bacteria 1307
110 Ga0500614_045709 3300053123 Bacteria 1131
111 Ga0500618_002009 3300053125 Bacteria 8263
112 Ga0500658_0009846 3300053134 Bacteria 3524
113 Ga0500658_0044185 3300053134 Bacteria 1797
114 Ga0500559_0053102 3300053136 Bacteria 1793
115 Ga0500590_000537 3300053148 Bacteria 13227
116 Ga0500590_000970 3300053148 Bacteria 11078
117 Ga0500634_0104093 3300053161 Unclassified 1414
118 Ga0500638_024019 3300053162 Bacteria 2903
119 Ga0500636_0000089 3300053177 Bacteria 45506
120 Ga0500636_0001127 3300053177 Bacteria 14310
121 Ga0500636_0076023 3300053177 Bacteria 1942
122 Ga0500625_017297 3300053729 Bacteria 3367
123 Ga0500645_005262 3300053730 Bacteria 4796
124 Ga0500587_001887 3300053739 Bacteria 2989

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046530 Ga0495654_0089335 Ga0495654_0089335_17_550 177
2 3300053177 Ga0500636_0000089 Ga0500636_0000089_15147_15791 200
3 3300003775 Ga0055524_1017316 Ga0055524_10173162 201
4 3300003790 Ga0055528_1002017 Ga0055528_10020174 201
5 3300025273 Ga0209673_1000055 Ga0209673_1000055161 201
6 3300025295 Ga0209564_1005016 Ga0209564_10050167 201
7 3300025299 Ga0209256_1002772 Ga0209256_10027724 201
8 3300046663 Ga0495635_0321867 Ga0495635_0321867_133_777 201
9 3300046809 Ga0495600_0287591 Ga0495600_0287591_133_777 201
10 3300053161 Ga0500634_0104093 Ga0500634_0104093_25_669 201
11 3300046528 Ga0495642_0020553 Ga0495642_0020553_1085_1729 202
12 3300010159 Ga0099796_10030631 Ga0099796_100306311 203
13 3300031456 Ga0307513_10238398 Ga0307513_102383982 203
14 3300013306 Ga0163162_10058310 Ga0163162_100583105 209
15 3300032004 Ga0307414_10886222 Ga0307414_108862222 210
16 iso_pu_bacteria 2508501042 2508691780 210
17 iso_pu_bacteria 2515154114 2515640567 210
18 iso_pu_bacteria 2547132374 2548500385 210
19 iso_pu_bacteria 2558860242 2559298437 210
20 iso_pu_bacteria 2582581283 2585168871 210
21 iso_pu_bacteria 2643221570 2643864493 210
22 iso_pu_bacteria 2643221652 2644291815 210
23 iso_pu_bacteria 2643221717 2644647064 210
24 iso_pu_bacteria 2738541281 2738744345 210
25 iso_pu_bacteria 2738543031 2739351876 210
26 iso_pu_bacteria 2738543032 2739353575 210
27 iso_pu_bacteria 2744054900 2746085487 210
28 iso_pu_bacteria 2744054901 2746094864 210
29 iso_pu_bacteria 2747842501 2748018471 210
30 iso_pu_bacteria 2842805378 2842805773 210
31 iso_pu_bacteria 2935648319 2935653212 210
32 iso_pu_bacteria 2935656913 2935660469 210
33 iso_pu_bacteria 2935984226 2935987535 210
34 iso_pu_bacteria 2936011229 2936016082 210
35 iso_pu_bacteria 2936019824 2936024715 210
36 iso_pu_bacteria 2936028420 2936031811 210
37 iso_pu_bacteria 2936046547 2936049672 210
38 iso_pu_bacteria 2936055302 2936060776 210
39 iso_pu_bacteria 2826581358 2826581455 211
40 iso_pu_bacteria 2842815866 2842820141 211
41 iso_pu_bacteria 2842849001 2842851344 211
42 iso_pu_bacteria 2857564685 2857565798 211
43 3300046457 Ga0495590_0016569 Ga0495590_0016569_1172_1810 212
44 3300046660 Ga0495625_0043355 Ga0495625_0043355_218_856 212
45 3300047320 Ga0495672_0162790 Ga0495672_0162790_291_929 212
46 3300006871 Ga0075434_100829307 Ga0075434_1008293071 213
47 3300006914 Ga0075436_100030727 Ga0075436_1000307272 213
48 3300046616 Ga0495668_0074851 Ga0495668_0074851_1106_1747 213
49 3300046684 Ga0495669_0006140 Ga0495669_0006140_1094_1735 213
50 3300050514 nmdc:mga08x19_26970_c1 nmdc:mga08x19_26970_c1_466_1110 213
51 3300053730 Ga0500645_005262 Ga0500645_005262_2817_3458 213
52 3300003323 rootH1_10006849 rootH1_100068497 214
53 3300005290 Ga0065712_10067756 Ga0065712_1006775644 214
54 3300005347 Ga0070668_100913060 Ga0070668_1009130602 214
55 3300005468 Ga0070707_100452836 Ga0070707_1004528362 214
56 3300005518 Ga0070699_100719292 Ga0070699_1007192921 214
57 3300005536 Ga0070697_100004166 Ga0070697_1000041665 214
58 3300006048 Ga0075363_100009463 Ga0075363_1000094635 214
59 3300006173 Ga0070716_100042389 Ga0070716_1000423892 214
60 3300006195 Ga0075366_10017532 Ga0075366_100175325 214
61 3300007076 Ga0075435_100075160 Ga0075435_1000751602 214
62 3300007265 Ga0099794_10332211 Ga0099794_103322111 214
63 3300007788 Ga0099795_10139842 Ga0099795_101398421 214
64 3300009147 Ga0114129_10639700 Ga0114129_106397002 214
65 3300017792 Ga0163161_10015691 Ga0163161_100156914 214
66 3300025922 Ga0207646_10699065 Ga0207646_106990652 214
67 3300025939 Ga0207665_10022460 Ga0207665_100224603 214
68 3300025972 Ga0207668_10905235 Ga0207668_109052352 214
69 3300026095 Ga0207676_10075864 Ga0207676_100758642 214
70 3300027512 Ga0209179_1069110 Ga0209179_10691101 214
71 3300027876 Ga0209974_10098535 Ga0209974_100985351 214
72 3300028794 Ga0307515_10002444 Ga0307515_100024446 214
73 3300028794 Ga0307515_10055210 Ga0307515_100552105 214
74 3300031548 Ga0307408_100000167 Ga0307408_10000016739 214
75 3300031548 Ga0307408_100594503 Ga0307408_1005945032 214
76 3300031616 Ga0307508_10055956 Ga0307508_100559563 214
77 3300031730 Ga0307516_10001957 Ga0307516_100019578 214
78 3300031730 Ga0307516_10028677 Ga0307516_100286774 214
79 3300031730 Ga0307516_10060324 Ga0307516_100603242 214
80 3300031731 Ga0307405_10336011 Ga0307405_103360112 214
81 3300031901 Ga0307406_10002338 Ga0307406_100023385 214
82 3300031911 Ga0307412_10000709 Ga0307412_1000070915 214
83 3300033180 Ga0307510_10106396 Ga0307510_101063963 214
84 3300039447 Ga0436361_0085170 Ga0436361_0085170_75_731 214
85 3300041458 Ga0451798_1032345 Ga0451798_1032345_283_927 214
86 3300041491 Ga0451833_0681917 Ga0451833_0681917_642_1289 214
87 3300041498 Ga0451841_0849733 Ga0451841_0849733_275_922 214
88 3300041505 Ga0451849_0432838 Ga0451849_0432838_1261_1905 214
89 3300041512 Ga0451853_0654686 Ga0451853_0654686_1001_1648 214
90 3300041512 Ga0451853_1518279 Ga0451853_1518279_481_1125 214
91 3300041512 Ga0451853_2180608 Ga0451853_2180608_2046_2690 214
92 3300041512 Ga0451853_3333494 Ga0451853_3333494_452_1096 214
93 3300044712 Ga0453684_0104152 Ga0453684_0104152_1298_1942 214
94 3300045051 Ga0451576_0179978 Ga0451576_0179978_618_1262 214
95 3300046459 Ga0495629_0122134 Ga0495629_0122134_1030_1674 214
96 3300046472 Ga0495580_0004870 Ga0495580_0004870_2770_3417 214
97 3300046512 Ga0495610_0072010 Ga0495610_0072010_951_1595 214
98 3300046519 Ga0495632_0004981 Ga0495632_0004981_80_724 214
99 3300046529 Ga0495652_0025085 Ga0495652_0025085_3447_4091 214
100 3300046529 Ga0495652_0265432 Ga0495652_0265432_151_795 214
101 3300046542 Ga0495597_0032790 Ga0495597_0032790_1162_1806 214
102 3300046557 Ga0495622_0020291 Ga0495622_0020291_1015_1659 214
103 3300046660 Ga0495625_0002298 Ga0495625_0002298_18806_19450 214
104 3300046660 Ga0495625_0051453 Ga0495625_0051453_363_1007 214
105 3300046674 Ga0495588_0021017 Ga0495588_0021017_251_898 214
106 3300046674 Ga0495588_0074093 Ga0495588_0074093_1081_1725 214
107 3300046690 Ga0495624_0449759 Ga0495624_0449759_86_730 214
108 3300046694 Ga0495649_0001211 Ga0495649_0001211_4827_5471 214
109 3300047443 Ga0495687_011104 Ga0495687_011104_3557_4201 214
110 3300047472 Ga0495686_0111515 Ga0495686_0111515_414_1058 214
111 3300048091 Ga0495626_0022541 Ga0495626_0022541_1724_2368 214
112 3300048904 Ga0496101_0009272 Ga0496101_0009272_1935_2609 214
113 3300048905 Ga0496102_0001828 Ga0496102_0001828_3510_4184 214
114 3300048907 Ga0496104_0083196 Ga0496104_0083196_748_1422 214
115 3300048908 Ga0496105_0216147 Ga0496105_0216147_518_1192 214
116 3300048910 Ga0496107_0504277 Ga0496107_0504277_184_858 214
117 3300048923 Ga0496120_0044481 Ga0496120_0044481_31_702 214
118 3300048924 Ga0496121_0070450 Ga0496121_0070450_199_843 214
119 3300048927 Ga0496124_0000191 Ga0496124_0000191_23621_24292 214
120 3300049663 Ga0501223_030730 Ga0501223_030730_288_932 214
121 3300049763 Ga0501266_000473 Ga0501266_000473_4006_4650 214
122 3300049763 Ga0501266_000838 Ga0501266_000838_157_801 214
123 3300050490 nmdc:mga03n38_4957_c1 nmdc:mga03n38_4957_c1_1963_2607 214
124 3300050491 nmdc:mga00v17_25409_c1 nmdc:mga00v17_25409_c1_2720_3364 214
125 3300050493 nmdc:mga0k408_22277_c1 nmdc:mga0k408_22277_c1_2103_2747 214
126 3300050493 nmdc:mga0k408_317465_c1 nmdc:mga0k408_317465_c1_201_854 214
127 3300050493 nmdc:mga0k408_338961_c1 nmdc:mga0k408_338961_c1_77_721 214
128 3300050493 nmdc:mga0k408_57478_c1 nmdc:mga0k408_57478_c1_926_1570 214
129 3300050507 nmdc:mga05p37_1313603_c1 nmdc:mga05p37_1313603_c1_76_720 214
130 3300050512 nmdc:mga0n895_710676_c1 nmdc:mga0n895_710676_c1_29_676 214
131 3300053085 Ga0495619_0068760 Ga0495619_0068760_1028_1672 214
132 3300053086 Ga0500578_0145333 Ga0500578_0145333_793_1437 214
133 3300053091 Ga0500647_0007114 Ga0500647_0007114_1618_2262 214
134 3300053105 Ga0500557_000004 Ga0500557_000004_154755_155399 214
135 3300053119 Ga0500595_002845 Ga0500595_002845_4217_4861 214
136 3300053122 Ga0500608_104543 Ga0500608_104543_448_1092 214
137 3300053123 Ga0500614_045709 Ga0500614_045709_109_753 214
138 3300053125 Ga0500618_002009 Ga0500618_002009_6463_7107 214
139 3300053134 Ga0500658_0009846 Ga0500658_0009846_2229_2873 214
140 3300053134 Ga0500658_0044185 Ga0500658_0044185_158_802 214
141 3300053136 Ga0500559_0053102 Ga0500559_0053102_597_1244 214
142 3300053148 Ga0500590_000537 Ga0500590_000537_11300_11944 214
143 3300053148 Ga0500590_000970 Ga0500590_000970_7112_7756 214
144 3300053162 Ga0500638_024019 Ga0500638_024019_2244_2891 214
145 3300053177 Ga0500636_0001127 Ga0500636_0001127_9646_10290 214
146 3300053177 Ga0500636_0076023 Ga0500636_0076023_756_1400 214
147 3300053729 Ga0500625_017297 Ga0500625_017297_1126_1770 214
148 3300053739 Ga0500587_001887 Ga0500587_001887_2243_2887 214
149 iso_pu_bacteria 2874168670 2874174301 214
150 3300002737 JGI25162J39368_1003105 JGI25162J39368_10031053 215
151 3300025233 Ga0209437_104339 Ga0209437_1043391 215
152 3300046453 Ga0495627_000008 Ga0495627_000008_93746_94393 215

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03807

F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

36

126

0.97

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

36

156

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
8eei-assembly1.cif.gz_B unbound c. ammoniagenes monoamine oxidase (mao) 0.9674 3 31
8eem-assembly2.cif.gz_B c. ammoniagenes monoamine oxidase (mao) bound to norepinephrine 0.9667 3 31
8eeo-assembly1.cif.gz_A c. ammoniagenes monoamine oxidase bound to cadaverine 0.9664 3 31
8eej-assembly2.cif.gz_A c. ammoniagenes monoamine oxidase (mao) c424s variant bound to dopamine 0.9648 3 31
8eek-assembly1.cif.gz_A c. ammoniagenes monoamine oxidase (mao) bound to tyramine 0.9639 3 31
ID Description Score Start End Superfamily
af_I1LF51_8_392_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9841 3 31 3.50.50.60
af_Q54F68_8_396_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9494 1 30 3.50.50.60
af_Q54RE8_8_392_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9494 3 30 3.50.50.60
af_Q54LX4_3_401_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9492 1 29 3.50.50.60
af_Q54JZ8_16_204_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9395 2 31 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A4R1IVY3-F1-model_v4 deleted 1.005 1 69
AF-A0A329J692-F1-model_v4 Pyrroline-5-carboxylate reductase catalytic N-terminal domain-containing protein 0.9989 2 66
AF-A0A4Q4B061-F1-model_v4 deleted 0.9988 141 215
AF-A0A519HC89-F1-model_v4 NADP oxidoreductase 0.9944 1 73
AF-A0A537NVC4-F1-model_v4 NADP oxidoreductase 0.9879 1 66

Feature Viewer

pLDDT pTM Quality
93.95 0.91 High
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Predicted Structure (AlphaFold2)

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