|
Taxon Oid |
3300053119
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA |
| Genome Name Sample Name |
Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300053119 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Endosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.v5.0.25.aws |
| Img Submission Id |
270841 |
|
Gold Analysis Project Id
|
Ga0500595
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0587776
|
|
Gold Study Id
|
Gs0154044
|
| Add Date |
06/14/2022 00:00:00 |
| Assembly Method |
metaspades v. 3.15.2 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
08/13/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
[email protected] |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Christopher W. Schadt; Emiley Eloe-Fadrosh; Mitchel Doktycz |
| Contact Email |
[email protected] |
| Contact Name |
Mitchel Doktycz |
| Award Doi |
10.46936/10.25585/60000017 |
| Funding Program |
Director's Science |
| Funding Year |
2020 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA1016659 |
| Ncbi Biosample Accession |
SAMN37388158 |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Endosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
1.000000 |
| Geographic Location |
USA: Clatskanie, Oregon |
| Habitat |
Root endosphere |
| Isolation |
Fine root endosphere |
| Isolation Country |
8855 |
| Latitude |
46.1208 |
| Longitude |
-123.269 |
| Sample Collection Date |
2020/9/9 |
| Host Name |
Populus |
| Genome Size Assembled |
469925656 |
| Gene Count Assembled |
862438 |