F416961

General Info

Members Datasets Scaffolds Average Seq Length
346 241 692 379

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332141|2816516973
Length 435
Sequence LFMKRDNRWRERPGSATIRTRRITKAGPVPDRTSALFCNRISVKRRRDFGSPLGSQSEIPVTQAAILVLEDGTVFEGESVGAPGLSVGEVVFNTAMTGYQEVLTDPSYARQMVTLTYPHIGNTGMTDQDNEASKVWSAGLIVRDVPRRPSNWRSQVSLQDWLIQRGVVAIAGIDTRKLTRILREKGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVTTEKTYTWTEGQLDLDANAFVSVPARFKVVAYDFGVKTNILRMLAERGCEVTVVPAQTPAAEVLALKPDGVFLSNGPGDPEPCDYAIEAIKTFIDVKIPTFGICLGHQLLGLASGAQTMKMGHGHHGANHPVQDLDSGRVMITSQNHGFAIDEATLPPTLRVTHRSLFDGTNQGVARTDVPAFSFQGHPEASPGPTDVGPLFDRFVVLMEQAKA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
8 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
15 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
16 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
22 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
23 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
26 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
27 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
28 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
29 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
30 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
55 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
56 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
61 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
99 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
100 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
101 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
102 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
103 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
104 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
105 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
106 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
107 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
110 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
111 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
112 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
113 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
114 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
115 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
116 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
117 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
118 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
121 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
122 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
123 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
124 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
125 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
126 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
127 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
128 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
129 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
130 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
131 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
132 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
133 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
134 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
135 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
136 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
137 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
138 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
139 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
140 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
141 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
142 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
143 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
144 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
145 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
146 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
147 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
148 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
149 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
150 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
151 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
152 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
153 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
154 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
155 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
156 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
157 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
158 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
161 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
162 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
163 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
164 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
167 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
171 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
172 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
173 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
174 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
175 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
176 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
177 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
178 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
179 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
180 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
181 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
184 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
185 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
186 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
187 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
188 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
189 2643221559 Lysobacter sp. Root559 Isolate Unclassified
190 2643221573 Lysobacter sp. Root604 Isolate Unclassified
191 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
192 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
193 2643221586 Lysobacter sp. Root667 Isolate Unclassified
194 2643221593 Lysobacter sp. Root690 Isolate Unclassified
195 2643221612 Lysobacter sp. Root76 Isolate Unclassified
196 2643221695 Lysobacter sp. Root494 Isolate Unclassified
197 2643221720 Lysobacter sp. Root916 Isolate Unclassified
198 2643221727 Lysobacter sp. Root96 Isolate Unclassified
199 2643221728 Lysobacter sp. Root983 Isolate Unclassified
200 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
201 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
202 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
203 2818991457 Xanthomonas translucens 569 Isolate Unclassified
204 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
205 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
206 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
207 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
208 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
209 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
210 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
211 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
212 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
213 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
214 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
215 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
216 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
217 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
218 2919513703 Luteimonas sp. 3794 Isolate Unclassified
219 2919675420 Luteimonas terrae 4099 Isolate Unclassified
220 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
221 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
222 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
223 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
224 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
225 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
226 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
227 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
228 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
229 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
230 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
231 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
232 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
233 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
234 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
235 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
236 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
237 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere
238 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere
239 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
240 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
241 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.92
Metatranscriptomes 1.73
Isolates 17.34

Biome Distribution

Category Percentage (%)
Aerial Root 0.29
Bulb 0
Endosphere 19.65
Nodule 0.29
Rhizoplane 5.49
Rhizosphere 54.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1501249 2162886007 Bacteria 6053
2 JGI25152J39213_1000118 3300002773 Bacteria 55168
3 JGI25150J39212_1000434 3300002774 Bacteria 18752
4 JGI25151J46595_10000315 3300003187 Bacteria 52657
5 JGI25151J46595_10000637 3300003187 Bacteria 30189
6 JGI25151J46595_10015121 3300003187 Bacteria 3417
7 JGI25153J46596_10000167 3300003215 Bacteria 66040
8 Ga0055526_1000021 3300003771 Bacteria 180007
9 Ga0055526_1004952 3300003771 Bacteria 7822
10 Ga0055526_1014801 3300003771 Bacteria 3178
11 Ga0055537_1000091 3300003773 Bacteria 66379
12 Ga0055537_1000094 3300003773 Bacteria 66156
13 Ga0055524_1000062 3300003775 Bacteria 135238
14 Ga0055524_1006195 3300003775 Bacteria 5221
15 Ga0055536_1006041 3300003781 Bacteria 5743
16 Ga0055536_1008383 3300003781 Bacteria 4450
17 Ga0055534_1000043 3300003784 Bacteria 99338
18 Ga0055534_1000052 3300003784 Bacteria 91095
19 Ga0055528_1000009 3300003790 Bacteria 224150
20 Ga0055528_1000087 3300003790 Bacteria 72896
21 Ga0055530_10002072 3300003791 Bacteria 13463
22 Ga0055531_10007665 3300003794 Bacteria 5840
23 Ga0058692_1000031 3300003856 Bacteria 188488
24 Ga0058692_1000060 3300003856 Bacteria 98866
25 Ga0065714_10098922 3300005288 Bacteria 1699
26 Ga0065704_10000898 3300005289 Bacteria 21490
27 Ga0065704_10007279 3300005289 Bacteria 3202
28 Ga0065704_10071847 3300005289 Bacteria 9771
29 Ga0070658_10060686 3300005327 Bacteria 3080
30 Ga0070683_100000550 3300005329 Bacteria 26581
31 Ga0070670_100001183 3300005331 Bacteria 20679
32 Ga0070670_100017704 3300005331 Bacteria 6112
33 Ga0070666_10047530 3300005335 Bacteria 2881
34 Ga0068868_100000563 3300005338 Bacteria 24853
35 Ga0070660_100002183 3300005339 Bacteria 13491
36 Ga0070691_10139511 3300005341 Bacteria 1234
37 Ga0070661_100010236 3300005344 Bacteria 6515
38 Ga0070668_100095657 3300005347 Bacteria 2346
39 Ga0070675_100001483 3300005354 Bacteria 17312
40 Ga0070671_100001086 3300005355 Bacteria 20125
41 Ga0070671_100019708 3300005355 Bacteria 5492
42 Ga0070674_100043250 3300005356 Bacteria 3063
43 Ga0070673_100009273 3300005364 Bacteria 6603
44 Ga0070678_100001216 3300005456 Bacteria 13639
45 Ga0070684_100020564 3300005535 Bacteria 5475
46 Ga0070672_100000196 3300005543 Bacteria 33585
47 Ga0070693_100035914 3300005547 Bacteria 2752
48 Ga0070664_100002379 3300005564 Bacteria 15112
49 Ga0070664_100096059 3300005564 Bacteria 2571
50 Ga0068852_100000380 3300005616 Bacteria 29923
51 Ga0068864_100084466 3300005618 Bacteria 2789
52 Ga0068864_100141085 3300005618 Bacteria 2174
53 Ga0068851_10001552 3300005834 Bacteria 10064
54 Ga0068863_100042396 3300005841 Bacteria 4324
55 Ga0075364_10019604 3300006051 Bacteria 4245
56 Ga0075364_10054717 3300006051 Bacteria 2610
57 Ga0097621_100001161 3300006237 Bacteria 18255
58 Ga0105251_10000364 3300009011 Bacteria 44484
59 Ga0105251_10012017 3300009011 Bacteria 4914
60 Ga0111539_10117346 3300009094 Bacteria 3120
61 Ga0105243_10046190 3300009148 Bacteria 3424
62 Ga0157373_10214525 3300013100 Bacteria 1357
63 Ga0157371_10091401 3300013102 Bacteria 2156
64 Ga0157370_10041707 3300013104 Bacteria 4425
65 Ga0157374_10000304 3300013296 Bacteria 45616
66 Ga0157378_10050440 3300013297 Bacteria 3704
67 Ga0163162_10015258 3300013306 Bacteria 7505
68 Ga0157372_10237464 3300013307 Bacteria 2114
69 Ga0157375_10031396 3300013308 Bacteria 5022
70 Ga0182008_10014820 3300014497 Bacteria 4077
71 Ga0157376_10016726 3300014969 Bacteria 5577
72 Ga0182007_10000556 3300015262 Bacteria 22049
73 Ga0182005_1000463 3300015265 Bacteria 21182
74 Ga0182005_1010956 3300015265 Bacteria 2597
75 Ga0183360_10001 3300015689 Bacteria 3943671
76 Ga0163161_10014452 3300017792 Bacteria 5496
77 Ga0163161_10019783 3300017792 Bacteria 4723
78 Ga0207425_1000097 3300025245 Bacteria 84719
79 Ga0207425_1009629 3300025245 Bacteria 2393
80 Ga0209026_1004760 3300025250 Bacteria 3895
81 Ga0209129_1000189 3300025258 Bacteria 84712
82 Ga0209565_1000048 3300025263 Bacteria 224961
83 Ga0209565_1000063 3300025263 Bacteria 183711
84 Ga0209565_1006435 3300025263 Bacteria 3295
85 Ga0209673_1000001 3300025273 Bacteria 3176258
86 Ga0209673_1000065 3300025273 Bacteria 252799
87 Ga0209673_1004687 3300025273 Bacteria 7212
88 Ga0209130_1012869 3300025284 Bacteria 2167
89 Ga0209130_1014888 3300025284 Bacteria 1936
90 Ga0209675_1000011 3300025291 Bacteria 520597
91 Ga0209675_1000045 3300025291 Bacteria 225750
92 Ga0209676_1000011 3300025292 Bacteria 860463
93 Ga0209676_1000068 3300025292 Bacteria 314068
94 Ga0209676_1000086 3300025292 Bacteria 264155
95 Ga0209676_1001944 3300025292 Bacteria 16652
96 Ga0209676_1012663 3300025292 Bacteria 3292
97 Ga0209676_1021462 3300025292 Bacteria 2168
98 Ga0209025_1000054 3300025294 Bacteria 317002
99 Ga0209025_1001495 3300025294 Bacteria 30245
100 Ga0209025_1015248 3300025294 Bacteria 4650
101 Ga0209564_1000001 3300025295 Bacteria 3176258
102 Ga0209564_1000433 3300025295 Bacteria 72594
103 Ga0209564_1016703 3300025295 Bacteria 2902
104 Ga0209758_1000062 3300025297 Bacteria 317002
105 Ga0209050_1000239 3300025298 Bacteria 119530
106 Ga0209050_1000528 3300025298 Bacteria 63464
107 Ga0209050_1000599 3300025298 Bacteria 57405
108 Ga0209256_1000002 3300025299 Bacteria 1906740
109 Ga0209256_1002460 3300025299 Bacteria 15065
110 Ga0209256_1005613 3300025299 Bacteria 7117
111 Ga0209256_1005695 3300025299 Bacteria 7000
112 Ga0209256_1006369 3300025299 Bacteria 6284
113 Ga0209256_1006961 3300025299 Bacteria 5761
114 Ga0209051_1003517 3300025303 Bacteria 10229
115 Ga0209257_1000014 3300025304 Bacteria 946850
116 Ga0209257_1000121 3300025304 Bacteria 222588
117 Ga0209257_1001140 3300025304 Bacteria 33983
118 Ga0209257_1008065 3300025304 Bacteria 6130
119 Ga0209257_1016458 3300025304 Bacteria 2991
120 Ga0207697_10035085 3300025315 Bacteria 2053
121 Ga0207713_1000422 3300025735 Bacteria 44963
122 Ga0207713_1013919 3300025735 Bacteria 4210
123 Ga0207705_10047185 3300025909 Bacteria 3097
124 Ga0207657_10003818 3300025919 Bacteria 16006
125 Ga0207649_10002886 3300025920 Bacteria 9460
126 Ga0207649_10005108 3300025920 Bacteria 7091
127 Ga0207650_10003262 3300025925 Bacteria 11182
128 Ga0207650_10006859 3300025925 Bacteria 7766
129 Ga0207659_10001666 3300025926 Bacteria 13194
130 Ga0207644_10000313 3300025931 Bacteria 31603
131 Ga0207644_10001403 3300025931 Bacteria 15529
132 Ga0207690_10035198 3300025932 Bacteria 3233
133 Ga0207706_10237431 3300025933 Bacteria 1594
134 Ga0207709_10000632 3300025935 Bacteria 28799
135 Ga0207691_10000196 3300025940 Bacteria 58015
136 Ga0207661_10022078 3300025944 Bacteria 4784
137 Ga0207679_10001021 3300025945 Bacteria 17888
138 Ga0207651_10005776 3300025960 Bacteria 6390
139 Ga0207668_10029497 3300025972 Bacteria 3596
140 Ga0207668_10123071 3300025972 Bacteria 1967
141 Ga0207677_10002312 3300026023 Bacteria 10016
142 Ga0207641_10031856 3300026088 Bacteria 4375
143 Ga0207683_10003505 3300026121 Bacteria 13690
144 Ga0207698_10000360 3300026142 Bacteria 26761
145 Ga0209371_1000004 3300027312 Bacteria 1098197
146 Ga0209371_1000139 3300027312 Bacteria 120350
147 Ga0209969_1004632 3300027360 Bacteria 1924
148 Ga0209967_1002345 3300027364 Bacteria 2453
149 Ga0209970_1004497 3300027614 Bacteria 2316
150 Ga0209983_1001168 3300027665 Bacteria 5808
151 Ga0209971_1000256 3300027682 Bacteria 15027
152 Ga0209974_10006096 3300027876 Bacteria 4220
153 Ga0268256_1000005 3300030500 Bacteria 1082342
154 Ga0268256_1000109 3300030500 Bacteria 120350
155 Ga0316177_1004253 3300030731 Bacteria 6301
156 Ga0316176_1035623 3300030732 Bacteria 3714
157 Ga0314311_1031444 3300030733 Bacteria 1734
158 Ga0316183_1014708 3300030742 Bacteria 5209
159 Ga0316575_10000638 3300031665 Bacteria 10338
160 Ga0316576_10100050 3300031727 Bacteria 2166
161 Ga0307413_10006999 3300031824 Bacteria 5201
162 Ga0307413_10134585 3300031824 Bacteria 1697
163 Ga0307406_10016828 3300031901 Bacteria 4254
164 Ga0307412_10036310 3300031911 Bacteria 3156
165 Ga0307414_10007761 3300032004 Bacteria 6046
166 Ga0307414_10145012 3300032004 Bacteria 1864
167 Ga0316574_0003305 3300035398 Bacteria 8291
168 Ga0316574_0003618 3300035398 Bacteria 8001
169 Ga0316574_0031663 3300035398 Bacteria 3209
170 Ga0316574_0173226 3300035398 Bacteria 1389
171 Ga0316584_0022080 3300036712 Bacteria 4638
172 Ga0395899_0007600 3300037312 Bacteria 8360
173 Ga0395899_0036257 3300037312 Bacteria 3700
174 Ga0395900_0196053 3300037418 Bacteria 2046
175 Ga0395898_0074623 3300037466 Bacteria 3276
176 Ga0395898_0131322 3300037466 Bacteria 2399
177 Ga0395905_0002485 3300037471 Bacteria 20393
178 Ga0395905_0011360 3300037471 Bacteria 8612
179 Ga0395905_0227404 3300037471 Bacteria 1745
180 Ga0395901_0019873 3300038443 Bacteria 6871
181 Ga0400483_187537 3300039062 Bacteria 5100
182 Ga0436361_1006756 3300039447 Bacteria 3316
183 Ga0439436_0010058 3300041404 Bacteria 2892
184 Ga0439439_0005476 3300041406 Bacteria 2899
185 Ga0439447_013829 3300041407 Bacteria 2279
186 Ga0439465_0020937 3300041413 Bacteria 2050
187 Ga0439465_0034941 3300041413 Bacteria 1610
188 Ga0451800_1122726 3300041459 Bacteria 5678
189 Ga0451806_090773 3300041462 Bacteria 2721
190 Ga0451807_1984984 3300041486 Bacteria 2855
191 Ga0439445_0004193 3300042004 Bacteria 3259
192 Ga0439432_002482 3300042006 Bacteria 6950
193 Ga0439449_0021239 3300042007 Bacteria 2431
194 Ga0439449_0031614 3300042007 Bacteria 1973
195 Ga0450905_004803 3300042142 Bacteria 1802
196 Ga0451577_0008202 3300042876 Bacteria 10184
197 Ga0453683_0054659 3300044673 Bacteria 2499
198 Ga0453684_0000386 3300044712 Bacteria 180948
199 Ga0495606_0024412 3300046507 Bacteria 4356
200 Ga0495610_0027653 3300046512 Bacteria 3010
201 Ga0495643_0025387 3300046522 Bacteria 3352
202 Ga0495621_0002619 3300046539 Bacteria 4861
203 Ga0495656_0025673 3300046615 Bacteria 2338
204 Ga0495656_0059586 3300046615 Bacteria 1661
205 Ga0495668_0051729 3300046616 Bacteria 2274
206 Ga0495625_0062861 3300046660 Bacteria 2622
207 Ga0495659_0032225 3300046664 Bacteria 1833
208 Ga0495672_0000105 3300047320 Bacteria 133882
209 Ga0495687_002811 3300047443 Bacteria 13429
210 Ga0495686_0032227 3300047472 Bacteria 3393
211 Ga0495686_0037179 3300047472 Bacteria 3120
212 Ga0496101_0126783 3300048904 Bacteria 1935
213 Ga0496101_0262945 3300048904 Bacteria 1346
214 Ga0496108_0007978 3300048911 Bacteria 8589
215 Ga0496109_0005560 3300048912 Bacteria 10553
216 Ga0496109_0023787 3300048912 Bacteria 5438
217 Ga0496109_0138409 3300048912 Bacteria 2276
218 Ga0496110_0001035 3300048913 Bacteria 19563
219 Ga0496110_0007369 3300048913 Bacteria 8781
220 Ga0496110_0206678 3300048913 Bacteria 1784
221 Ga0496111_0018610 3300048914 Bacteria 4814
222 Ga0496111_0035268 3300048914 Bacteria 3574
223 Ga0496111_0115641 3300048914 Bacteria 1978
224 Ga0496112_0012095 3300048915 Bacteria 7919
225 Ga0496113_0010127 3300048916 Bacteria 6221
226 Ga0496114_0130176 3300048917 Bacteria 2172
227 Ga0496114_0204194 3300048917 Bacteria 1732
228 Ga0496116_0121533 3300048919 Bacteria 1510
229 Ga0496117_0001191 3300048920 Bacteria 39121
230 Ga0496117_0006034 3300048920 Bacteria 12450
231 Ga0496117_0081380 3300048920 Bacteria 2125
232 Ga0496118_0000858 3300048921 Bacteria 48244
233 Ga0496118_0003962 3300048921 Bacteria 18085
234 Ga0496118_0112489 3300048921 Bacteria 1802
235 Ga0496119_0001416 3300048922 Bacteria 29034
236 Ga0496119_0002285 3300048922 Bacteria 21233
237 Ga0496120_0000181 3300048923 Bacteria 107114
238 Ga0496120_0000676 3300048923 Bacteria 50058
239 Ga0496121_0111134 3300048924 Bacteria 2090
240 Ga0496122_0000901 3300048925 Bacteria 54955
241 Ga0496122_0002028 3300048925 Bacteria 30069
242 Ga0496123_0000727 3300048926 Bacteria 53518
243 Ga0496123_0012103 3300048926 Bacteria 7391
244 Ga0496123_0021836 3300048926 Bacteria 4959
245 Ga0496123_0039084 3300048926 Bacteria 3323
246 Ga0496123_0051459 3300048926 Bacteria 2742
247 Ga0496124_0000009 3300048927 Bacteria 734820
248 Ga0496124_0001061 3300048927 Bacteria 43394
249 Ga0496124_0004084 3300048927 Bacteria 17267
250 Ga0496124_0005543 3300048927 Bacteria 14139
251 Ga0496124_0025087 3300048927 Bacteria 5405
252 Ga0496124_0033480 3300048927 Bacteria 4520
253 Ga0496124_0072644 3300048927 Bacteria 2848
254 Ga0496124_0152402 3300048927 Bacteria 1811
255 Ga0496125_0002711 3300048928 Bacteria 22502
256 Ga0496125_0009091 3300048928 Bacteria 10278
257 Ga0496125_0114912 3300048928 Bacteria 1937
258 Ga0496126_0004409 3300048929 Bacteria 16857
259 Ga0496126_0077140 3300048929 Bacteria 2955
260 Ga0496126_0128217 3300048929 Bacteria 2194
261 Ga0501031_0002335 3300049568 Bacteria 12012
262 Ga0501031_0024953 3300049568 Bacteria 3899
263 Ga0501032_0024934 3300049569 Bacteria 4126
264 Ga0501033_0200836 3300049570 Bacteria 1424
265 Ga0501034_0000344 3300049571 Bacteria 80851
266 Ga0501034_0001973 3300049571 Bacteria 26001
267 Ga0501034_0144496 3300049571 Bacteria 2356
268 Ga0501034_0186693 3300049571 Bacteria 2036
269 Ga0501036_0001289 3300049572 Bacteria 19204
270 Ga0501038_0007728 3300049574 Bacteria 9914
271 Ga0501039_0030228 3300049575 Bacteria 4176
272 Ga0501047_0007860 3300049581 Bacteria 10051
273 Ga0501223_015720 3300049663 Bacteria 1498
274 Ga0501225_0010136 3300049705 Bacteria 2673
275 Ga0501275_000337 3300049772 Bacteria 5362
276 Ga0501044_0000035 3300049823 Bacteria 162042
277 nmdc:mga00v17_38111_c1 3300050491 Bacteria 2873
278 nmdc:mga00v17_45862_c1 3300050491 Bacteria 2643
279 nmdc:mga00v17_542_c1 3300050491 Bacteria 15377
280 Ga0500634_0000098 3300053161 Bacteria 34065
281 Ga0587077_004973 3300059493 Bacteria 1786
282 Ga0587090_009029 3300059510 Bacteria 1352
283 Ga0587091_004044 3300059511 Bacteria 1895
284 Ga0587071_005658 3300060344 Bacteria 1921
285 Ga0587111_0003176 3300060346 Bacteria 2303
286 Ga0587111_0008648 3300060346 Bacteria 1694
287 2816516973 2816332141 Bacteria 4436036
288 2525556676 2524614729 Bacteria 3091755
289 2547499409 2547132130 Bacteria 4660562
290 2547503012 2547132130 Bacteria 4660562
291 2572253868 2571042365 Bacteria 3289345
292 2578458487 2576861471 Bacteria 4648976
293 2630648272 2627854209 Bacteria 3093011
294 2643815895 2643221559 Bacteria 4424915
295 2643879115 2643221573 Bacteria 4784121
296 2643907782 2643221579 Bacteria 4443405
297 2643916012 2643221581 Bacteria 3893603
298 2643940584 2643221586 Bacteria 4446529
299 2643977015 2643221593 Bacteria 6296053
300 2644076803 2643221612 Bacteria 4361984
301 2644529375 2643221695 Bacteria 3441323
302 2644660417 2643221720 Bacteria 4694283
303 2644695117 2643221727 Bacteria 4415595
304 2644697776 2643221728 Bacteria 4797149
305 2747949491 2747842428 Bacteria 4689383
306 2748019475 2747842501 Bacteria 5293829
307 2765578896 2765235840 Bacteria 4663337
308 2819659659 2818991457 Bacteria 5323295
309 2842393044 2842391507 Bacteria 4486072
310 2842780767 2842780639 Bacteria 4337790
311 2852650910 2852649853 Bacteria 4036942
312 2852685540 2852684882 Bacteria 5463342
313 2857443752 2857442823 Bacteria 4562550
314 2894415653 2894414249 Bacteria 4405451
315 2895500730 2895498888 Bacteria 5283788
316 2895516400 2895511927 Bacteria 6802080
317 2895523681 2895522137 Bacteria 3284416
318 2895526738 2895525241 Bacteria 3388457
319 2919089784 2919089067 Bacteria 4560942
320 2919131693 2919130084 Bacteria 5301837
321 2919137721 2919134579 Bacteria 4480386
322 2919498150 2919497567 Bacteria 4408621
323 2919514570 2919513703 Bacteria 3844312
324 2919676612 2919675420 Bacteria 3969095
325 2923518459 2923516293 Bacteria 3716336
326 2928499489 2928496128 Bacteria 4631123
327 2929197937 2929195423 Bacteria 5325372
328 2931380827 2931380184 Bacteria 4455911
329 2937612367 2937610967 Bacteria 4618818
330 2939591381 2939589442 Bacteria 4214238
331 2939623516 2939622612 Bacteria 4698046
332 2939630891 2939626828 Bacteria 4695272
333 2941478244 2941475908 Bacteria 4145589
334 2941491048 2941489479 Bacteria 6313767
335 2961048316 2961047084 Bacteria 4594415
336 2961065314 2961064222 Bacteria 4749990
337 2974309056 2974307012 Bacteria 4172388
338 2977249774 2977247770 Bacteria 4160543
339 2984515737 2984514374 Bacteria 4172479
340 2987606356 2987605356 Bacteria 4187822
341 2995951987 2995948881 Bacteria 6358104
342 8002749949 8002745576 Bacteria 4840272
343 8003015914 8003014200 Bacteria 4059994
344 8021624248 8021622325 Bacteria 4844743
345 8021626621 8021626552 Bacteria 4665214
346 8021649083 8021648035 Bacteria 4772378
347 SwRhRL2b_contig_1501249
348 JGI25152J39213_1000118
349 JGI25150J39212_1000434
350 JGI25151J46595_10000315
351 JGI25151J46595_10000637
352 JGI25151J46595_10015121
353 JGI25153J46596_10000167
354 Ga0055526_1000021
355 Ga0055526_1004952
356 Ga0055526_1014801
357 Ga0055537_1000091
358 Ga0055537_1000094
359 Ga0055524_1000062
360 Ga0055524_1006195
361 Ga0055536_1006041
362 Ga0055536_1008383
363 Ga0055534_1000043
364 Ga0055534_1000052
365 Ga0055528_1000009
366 Ga0055528_1000087
367 Ga0055530_10002072
368 Ga0055531_10007665
369 Ga0058692_1000031
370 Ga0058692_1000060
371 Ga0065714_10098922
372 Ga0065704_10000898
373 Ga0065704_10007279
374 Ga0065704_10071847
375 Ga0070658_10060686
376 Ga0070683_100000550
377 Ga0070670_100001183
378 Ga0070670_100017704
379 Ga0070666_10047530
380 Ga0068868_100000563
381 Ga0070660_100002183
382 Ga0070691_10139511
383 Ga0070661_100010236
384 Ga0070668_100095657
385 Ga0070675_100001483
386 Ga0070671_100001086
387 Ga0070671_100019708
388 Ga0070674_100043250
389 Ga0070673_100009273
390 Ga0070678_100001216
391 Ga0070684_100020564
392 Ga0070672_100000196
393 Ga0070693_100035914
394 Ga0070664_100002379
395 Ga0070664_100096059
396 Ga0068852_100000380
397 Ga0068864_100084466
398 Ga0068864_100141085
399 Ga0068851_10001552
400 Ga0068863_100042396
401 Ga0075364_10019604
402 Ga0075364_10054717
403 Ga0097621_100001161
404 Ga0105251_10000364
405 Ga0105251_10012017
406 Ga0111539_10117346
407 Ga0105243_10046190
408 Ga0157373_10214525
409 Ga0157371_10091401
410 Ga0157370_10041707
411 Ga0157374_10000304
412 Ga0157378_10050440
413 Ga0163162_10015258
414 Ga0157372_10237464
415 Ga0157375_10031396
416 Ga0182008_10014820
417 Ga0157376_10016726
418 Ga0182007_10000556
419 Ga0182005_1000463
420 Ga0182005_1010956
421 Ga0183360_10001
422 Ga0163161_10014452
423 Ga0163161_10019783
424 Ga0207425_1000097
425 Ga0207425_1009629
426 Ga0209026_1004760
427 Ga0209129_1000189
428 Ga0209565_1000048
429 Ga0209565_1000063
430 Ga0209565_1006435
431 Ga0209673_1000001
432 Ga0209673_1000065
433 Ga0209673_1004687
434 Ga0209130_1012869
435 Ga0209130_1014888
436 Ga0209675_1000011
437 Ga0209675_1000045
438 Ga0209676_1000011
439 Ga0209676_1000068
440 Ga0209676_1000086
441 Ga0209676_1001944
442 Ga0209676_1012663
443 Ga0209676_1021462
444 Ga0209025_1000054
445 Ga0209025_1001495
446 Ga0209025_1015248
447 Ga0209564_1000001
448 Ga0209564_1000433
449 Ga0209564_1016703
450 Ga0209758_1000062
451 Ga0209050_1000239
452 Ga0209050_1000528
453 Ga0209050_1000599
454 Ga0209256_1000002
455 Ga0209256_1002460
456 Ga0209256_1005613
457 Ga0209256_1005695
458 Ga0209256_1006369
459 Ga0209256_1006961
460 Ga0209051_1003517
461 Ga0209257_1000014
462 Ga0209257_1000121
463 Ga0209257_1001140
464 Ga0209257_1008065
465 Ga0209257_1016458
466 Ga0207697_10035085
467 Ga0207713_1000422
468 Ga0207713_1013919
469 Ga0207705_10047185
470 Ga0207657_10003818
471 Ga0207649_10002886
472 Ga0207649_10005108
473 Ga0207650_10003262
474 Ga0207650_10006859
475 Ga0207659_10001666
476 Ga0207644_10000313
477 Ga0207644_10001403
478 Ga0207690_10035198
479 Ga0207706_10237431
480 Ga0207709_10000632
481 Ga0207691_10000196
482 Ga0207661_10022078
483 Ga0207679_10001021
484 Ga0207651_10005776
485 Ga0207668_10029497
486 Ga0207668_10123071
487 Ga0207677_10002312
488 Ga0207641_10031856
489 Ga0207683_10003505
490 Ga0207698_10000360
491 Ga0209371_1000004
492 Ga0209371_1000139
493 Ga0209969_1004632
494 Ga0209967_1002345
495 Ga0209970_1004497
496 Ga0209983_1001168
497 Ga0209971_1000256
498 Ga0209974_10006096
499 Ga0268256_1000005
500 Ga0268256_1000109
501 Ga0316177_1004253
502 Ga0316176_1035623
503 Ga0314311_1031444
504 Ga0316183_1014708
505 Ga0316575_10000638
506 Ga0316576_10100050
507 Ga0307413_10006999
508 Ga0307413_10134585
509 Ga0307406_10016828
510 Ga0307412_10036310
511 Ga0307414_10007761
512 Ga0307414_10145012
513 Ga0316574_0003305
514 Ga0316574_0003618
515 Ga0316574_0031663
516 Ga0316574_0173226
517 Ga0316584_0022080
518 Ga0395899_0007600
519 Ga0395899_0036257
520 Ga0395900_0196053
521 Ga0395898_0074623
522 Ga0395898_0131322
523 Ga0395905_0002485
524 Ga0395905_0011360
525 Ga0395905_0227404
526 Ga0395901_0019873
527 Ga0400483_187537
528 Ga0436361_1006756
529 Ga0439436_0010058
530 Ga0439439_0005476
531 Ga0439447_013829
532 Ga0439465_0020937
533 Ga0439465_0034941
534 Ga0451800_1122726
535 Ga0451806_090773
536 Ga0451807_1984984
537 Ga0439445_0004193
538 Ga0439432_002482
539 Ga0439449_0021239
540 Ga0439449_0031614
541 Ga0450905_004803
542 Ga0451577_0008202
543 Ga0453683_0054659
544 Ga0453684_0000386
545 Ga0495606_0024412
546 Ga0495610_0027653
547 Ga0495643_0025387
548 Ga0495621_0002619
549 Ga0495656_0025673
550 Ga0495656_0059586
551 Ga0495668_0051729
552 Ga0495625_0062861
553 Ga0495659_0032225
554 Ga0495672_0000105
555 Ga0495687_002811
556 Ga0495686_0032227
557 Ga0495686_0037179
558 Ga0496101_0126783
559 Ga0496101_0262945
560 Ga0496108_0007978
561 Ga0496109_0005560
562 Ga0496109_0023787
563 Ga0496109_0138409
564 Ga0496110_0001035
565 Ga0496110_0007369
566 Ga0496110_0206678
567 Ga0496111_0018610
568 Ga0496111_0035268
569 Ga0496111_0115641
570 Ga0496112_0012095
571 Ga0496113_0010127
572 Ga0496114_0130176
573 Ga0496114_0204194
574 Ga0496116_0121533
575 Ga0496117_0001191
576 Ga0496117_0006034
577 Ga0496117_0081380
578 Ga0496118_0000858
579 Ga0496118_0003962
580 Ga0496118_0112489
581 Ga0496119_0001416
582 Ga0496119_0002285
583 Ga0496120_0000181
584 Ga0496120_0000676
585 Ga0496121_0111134
586 Ga0496122_0000901
587 Ga0496122_0002028
588 Ga0496123_0000727
589 Ga0496123_0012103
590 Ga0496123_0021836
591 Ga0496123_0039084
592 Ga0496123_0051459
593 Ga0496124_0000009
594 Ga0496124_0001061
595 Ga0496124_0004084
596 Ga0496124_0005543
597 Ga0496124_0025087
598 Ga0496124_0033480
599 Ga0496124_0072644
600 Ga0496124_0152402
601 Ga0496125_0002711
602 Ga0496125_0009091
603 Ga0496125_0114912
604 Ga0496126_0004409
605 Ga0496126_0077140
606 Ga0496126_0128217
607 Ga0501031_0002335
608 Ga0501031_0024953
609 Ga0501032_0024934
610 Ga0501033_0200836
611 Ga0501034_0000344
612 Ga0501034_0001973
613 Ga0501034_0144496
614 Ga0501034_0186693
615 Ga0501036_0001289
616 Ga0501038_0007728
617 Ga0501039_0030228
618 Ga0501047_0007860
619 Ga0501223_015720
620 Ga0501225_0010136
621 Ga0501275_000337
622 Ga0501044_0000035
623 nmdc:mga00v17_38111_c1
624 nmdc:mga00v17_45862_c1
625 nmdc:mga00v17_542_c1
626 Ga0500634_0000098
627 Ga0587077_004973
628 Ga0587090_009029
629 Ga0587091_004044
630 Ga0587071_005658
631 Ga0587111_0003176
632 Ga0587111_0008648
633 2816516973
634 2525556676
635 2547499409
636 2547503012
637 2572253868
638 2578458487
639 2630648272
640 2643815895
641 2643879115
642 2643907782
643 2643916012
644 2643940584
645 2643977015
646 2644076803
647 2644529375
648 2644660417
649 2644695117
650 2644697776
651 2747949491
652 2748019475
653 2765578896
654 2819659659
655 2842393044
656 2842780767
657 2852650910
658 2852685540
659 2857443752
660 2894415653
661 2895500730
662 2895516400
663 2895523681
664 2895526738
665 2919089784
666 2919131693
667 2919137721
668 2919498150
669 2919514570
670 2919676612
671 2923518459
672 2928499489
673 2929197937
674 2931380827
675 2937612367
676 2939591381
677 2939623516
678 2939630891
679 2941478244
680 2941491048
681 2961048316
682 2961065314
683 2974309056
684 2977249774
685 2984515737
686 2987606356
687 2995951987
688 8002749949
689 8003015914
690 8021624248
691 8021626621
692 8021649083

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00988

CPSase_sm_chain

Carbamoyl-phosphate synthase small chain, CPSase domain

67

192

0.99

PF00117

GATase

Glutamine amidotransferase class-I

251

429

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1c30-assembly1.cif.gz_B crystal structure of carbamoyl phosphate synthetase: small subunit mutation c269s 0.9656 20 390
1jdb-assembly1.cif.gz_F carbamoyl phosphate synthetase from escherichia coli 0.9656 20 390
1t36-assembly1.cif.gz_B crystal structure of e. coli carbamoyl phosphate synthetase small subunit mutant c248d complexed with uridine 5'-monophosphate 0.9631 20 390
1a9x-assembly1.cif.gz_B carbamoyl phosphate synthetase: caught in the act of glutamine hydrolysis 0.9626 20 390
1cs0-assembly4.cif.gz_B crystal structure of carbamoyl phosphate synthetase complexed at cys269 in the small subunit with the tetrahedral mimic l-glutamate gamma-semialdehyde 0.9624 20 390
ID Description Score Start End Superfamily
af_P0A6F1_2_151_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.969 20 168 3.50.30.20
af_P0A6F1_2_151_3.50.30.20 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Carbamoyl-phosphate synthase small subunit, N-terminal domain 0.9564 20 168 3.50.30.20
af_Q58425_140_353_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9509 165 389 3.40.50.880
1a9xD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9461 169 390 3.40.50.880
af_Q2FZ73_174_352_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9457 209 385 3.40.50.880
ID Description Score Start End GO Terms
AF-A0A1Z8ZDT4-F1-model_v4 Glutamine amidotransferase domain-containing protein 0.9874 209 292 GO:0004332
GO:0005829
GO:0006094
GO:0006096
GO:0008270
AF-A0A2A4REU0-F1-model_v4 Carbamoyl-phosphate synthase small subunit (EC 6.3.5.5) 0.9759 20 306 GO:0004088
GO:0005524
GO:0005951
GO:0006207
GO:0006526
GO:0006541
AF-A0A6M1CLY1-F1-model_v4 deleted 0.9755 160 294
AF-A0A3C1KRD3-F1-model_v4 Carbamoyl-phosphate synthase small subunit (EC 6.3.5.5) 0.9742 18 177 GO:0004088
GO:0005524
AF-A0A3D3RZR3-F1-model_v4 Carbamoyl phosphate synthase small subunit 0.973 18 257 GO:0004088
GO:0005524
GO:0005951
GO:0006526

Map