F409612

General Info

Members Datasets Scaffolds Average Seq Length
329 220 658 375

Family's Representative Sequence

Representative Sequence 3300006195|Ga0075366_10006721|Ga0075366_100067216
Length 406
Sequence MKYVDEFRDGAVARGLAERLAAEVDPARTYSFMEFCGGHTHAISRYGIAELLPKNVRMVHGPGCPVCVLPIGRIDQAIALALDRGVMLCTYGDVMRVPASASAGPPPAGGDPLGGRAAQAPRGLSSESLSLMRAKARGADIRMVYSAADALKLAREHPDREVVFLAIGFETTTPPTALVIRQAAAENVGNFSVLCNHVLTPSAITHILESPEVREYGTVPIDGFVGPAHVSIVIGAAPYEHFAEEYRKPVVIAGFEPLDVMQAIVMLVRQVNDGRTEVENEFTRAVTRDGNLAAQQIVSAVLELRTSFEWRGLGEVPYSALKIRPAFAAFDAEKRFGLTYRSVADHKQCECGAILRGVKKPTDCKLFGTVCTPESPMGSCMVSSEGACAAHYSYGRFRDIPVVAAT

Samples

Sample ID Description Type Environment
1 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
37 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
39 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
63 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
64 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
65 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
66 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
67 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
68 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
71 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
72 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
77 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
78 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
79 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
80 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
83 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
84 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
85 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
86 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
87 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
88 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
89 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
97 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
98 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
99 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
100 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
101 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
102 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
103 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
104 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
105 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
108 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
109 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
110 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
111 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
112 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
113 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
114 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
115 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
116 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
117 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
118 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
119 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
120 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
121 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
122 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
123 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
124 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
125 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
126 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
127 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
128 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
129 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
130 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
131 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
132 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
133 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
134 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
135 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
136 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
137 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
138 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
141 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
142 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
143 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
144 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
145 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
146 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
147 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
148 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
149 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
150 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
151 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
152 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
154 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
155 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
156 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
157 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
158 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
161 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
162 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
163 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
164 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
165 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
166 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
167 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
168 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
169 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
170 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
171 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
172 2501025504 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
173 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
174 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
175 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
176 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
177 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
178 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
179 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
180 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
181 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
182 2519103095 Burkholderia sp. KJ006 Isolate Nodule
183 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
184 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
185 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
186 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
187 2619619299 Pseudomonas veronii R4 Genome sequencing Isolate Unclassified
188 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
189 2738541265 Pseudomonas sp. GV077 Isolate Unclassified
190 2738541282 Pseudomonas sp. GV058 Isolate Unclassified
191 2738541303 Pseudomonas sp. GV105 Isolate Unclassified
192 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
193 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
194 2816332256 Burkholderia vietnamiensis MSMB608WGS Isolate Unclassified
195 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
196 2816332298 Pseudomonas veronii R02 Isolate Rhizosphere
197 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
198 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
199 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
200 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
201 2856287931 Paraburkholderia bannensis BE22 Isolate Rhizosphere
202 2857357740 Paraburkholderia tropica BE15 Isolate Rhizosphere
203 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
204 2874168670 Mesorhizobium kowhaii Ach-343 Isolate Nodule
205 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
206 2885305155 Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 Isolate Nodule
207 2885326080 Mesorhizobium sp. M1E.F.Ca.ET.041.01.1.1 Isolate Nodule
208 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
209 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
210 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
211 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
212 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
213 639633007 Azoarcus olearius BH72 Isolate Unclassified
214 8002060224 Methylocystis sp. Sn-Cys Isolate Unclassified
215 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
216 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
217 8020807995 Burkholderia sp. B10 Isolate Rhizosphere
218 8040167225 Burkholderia vietnamiensis RS1 Isolate Unclassified
219 8040173305 Burkholderia vietnamiensis BE10 Isolate Rhizosphere
220 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.89
Metatranscriptomes 0.3
Isolates 15.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.65
Nodule 3.65
Rhizoplane 1.52
Rhizosphere 73.56
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075366_10006721 3300006195 Bacteria 6316
2 rootH1_10024110 3300003316 Bacteria 10638
3 rootL2_10045808 3300003322 Bacteria 1860
4 Ga0070676_10004908 3300005328 Bacteria 7087
5 Ga0070670_100001321 3300005331 Bacteria 19806
6 Ga0070677_10015873 3300005333 Bacteria 2673
7 Ga0068869_100038865 3300005334 Bacteria 3394
8 Ga0070666_10083849 3300005335 Bacteria 2181
9 Ga0068868_100001162 3300005338 Bacteria 18052
10 Ga0070668_100047346 3300005347 Bacteria 3306
11 Ga0070675_100075285 3300005354 Bacteria 2806
12 Ga0070671_100021115 3300005355 Bacteria 5317
13 Ga0070673_100117316 3300005364 Bacteria 2215
14 Ga0070659_100075332 3300005366 Bacteria 2690
15 Ga0070667_100000179 3300005367 Bacteria 77442
16 Ga0070667_100204514 3300005367 Bacteria 1753
17 Ga0070710_10000620 3300005437 Bacteria 16910
18 Ga0070694_100027941 3300005444 Bacteria 3667
19 Ga0070663_100051109 3300005455 Bacteria 2943
20 Ga0070681_10030774 3300005458 Bacteria 5387
21 Ga0068853_100104500 3300005539 Bacteria 2508
22 Ga0070672_100074407 3300005543 Bacteria 2710
23 Ga0068857_100018399 3300005577 Bacteria 6131
24 Ga0068864_100029658 3300005618 Bacteria 4636
25 Ga0068861_100069141 3300005719 Bacteria 2731
26 Ga0068858_100014868 3300005842 Bacteria 7321
27 Ga0075367_10003070 3300006178 Bacteria 7833
28 Ga0075366_10007210 3300006195 Bacteria 6127
29 Ga0105240_10001052 3300009093 Bacteria 48878
30 Ga0105245_10208595 3300009098 Bacteria 1880
31 Ga0105248_10086519 3300009177 Bacteria 3527
32 Ga0157369_10307480 3300013105 Bacteria 1649
33 Ga0157374_10010977 3300013296 Bacteria 7821
34 Ga0163162_10014342 3300013306 Bacteria 7744
35 Ga0157375_10105286 3300013308 Bacteria 2911
36 Ga0163163_10062833 3300014325 Bacteria 3680
37 Ga0157380_10028183 3300014326 Bacteria 4279
38 Ga0183367_1012 3300015688 Bacteria 347438
39 Ga0206356_10975097 3300020070 Bacteria 1987
40 Ga0213872_10003563 3300021361 Bacteria 8574
41 Ga0209051_1020545 3300025303 Bacteria 2839
42 Ga0207692_10000439 3300025898 Bacteria 14668
43 Ga0207645_10001993 3300025907 Bacteria 16424
44 Ga0207643_10030639 3300025908 Bacteria 2995
45 Ga0207695_10000960 3300025913 Bacteria 51384
46 Ga0207659_10007744 3300025926 Bacteria 6631
47 Ga0207664_10072859 3300025929 Bacteria 2771
48 Ga0207644_10023355 3300025931 Bacteria 4235
49 Ga0207690_10105412 3300025932 Bacteria 2022
50 Ga0207706_10032429 3300025933 Bacteria 4652
51 Ga0207691_10007411 3300025940 Bacteria 10563
52 Ga0207691_10020010 3300025940 Bacteria 6332
53 Ga0207689_10002134 3300025942 Bacteria 18611
54 Ga0207651_10014216 3300025960 Bacteria 4588
55 Ga0207668_10025956 3300025972 Bacteria 3798
56 Ga0207658_10002976 3300025986 Bacteria 12112
57 Ga0207658_10038907 3300025986 Bacteria 3430
58 Ga0207658_10172234 3300025986 Bacteria 1784
59 Ga0207677_10009348 3300026023 Bacteria 5516
60 Ga0207703_10077123 3300026035 Bacteria 2766
61 Ga0207676_10019074 3300026095 Bacteria 4998
62 Ga0207674_10044673 3300026116 Bacteria 4563
63 Ga0207675_100008048 3300026118 Bacteria 9934
64 Ga0207675_100290722 3300026118 Bacteria 1590
65 Ga0207698_10107879 3300026142 Bacteria 2326
66 Ga0209813_10009885 3300027866 Bacteria 2453
67 Ga0268264_10020179 3300028381 Bacteria 5447
68 Ga0265334_10045043 3300028573 Bacteria 1710
69 Ga0265336_10000097 3300028666 Bacteria 66270
70 Ga0265336_10047811 3300028666 Bacteria 1298
71 Ga0307517_10020464 3300028786 Bacteria 8426
72 Ga0265324_10000001 3300029957 Bacteria 562975
73 Ga0265324_10000160 3300029957 Bacteria 52007
74 Ga0265324_10001503 3300029957 Bacteria 13185
75 Ga0265324_10013777 3300029957 Bacteria 3008
76 Ga0265324_10022831 3300029957 Bacteria 2234
77 Ga0265330_10000062 3300031235 Bacteria 95409
78 Ga0265330_10001223 3300031235 Bacteria 15085
79 Ga0265330_10028192 3300031235 Bacteria 2533
80 Ga0265332_10000339 3300031238 Bacteria 35321
81 Ga0265328_10007439 3300031239 Bacteria 4563
82 Ga0265328_10022324 3300031239 Bacteria 2409
83 Ga0265328_10025422 3300031239 Bacteria 2230
84 Ga0265320_10004931 3300031240 Bacteria 8660
85 Ga0265325_10001227 3300031241 Bacteria 18265
86 Ga0265325_10012403 3300031241 Bacteria 4874
87 Ga0265325_10013925 3300031241 Bacteria 4562
88 Ga0265325_10015262 3300031241 Bacteria 4323
89 Ga0265329_10012165 3300031242 Bacteria 3103
90 Ga0265331_10000554 3300031250 Bacteria 33793
91 Ga0265331_10002660 3300031250 Bacteria 11961
92 Ga0265331_10012006 3300031250 Bacteria 4718
93 Ga0265331_10028456 3300031250 Bacteria 2795
94 Ga0265327_10000205 3300031251 Bacteria 123596
95 Ga0265327_10000283 3300031251 Bacteria 100296
96 Ga0265327_10001775 3300031251 Bacteria 25434
97 Ga0265327_10007312 3300031251 Bacteria 8560
98 Ga0265327_10013757 3300031251 Bacteria 5348
99 Ga0265327_10018848 3300031251 Bacteria 4263
100 Ga0265327_10025954 3300031251 Bacteria 3403
101 Ga0265327_10029629 3300031251 Bacteria 3109
102 Ga0265327_10030619 3300031251 Bacteria 3038
103 Ga0265327_10039189 3300031251 Bacteria 2576
104 Ga0265327_10058014 3300031251 Bacteria 1989
105 Ga0265327_10058604 3300031251 Bacteria 1976
106 Ga0265316_10020902 3300031344 Bacteria 5559
107 Ga0265316_10043470 3300031344 Bacteria 3580
108 Ga0265316_10155793 3300031344 Bacteria 1710
109 Ga0265316_10160210 3300031344 Bacteria 1682
110 Ga0265316_10200448 3300031344 Bacteria 1480
111 Ga0307508_10000414 3300031616 Bacteria 50666
112 Ga0307508_10067283 3300031616 Bacteria 3151
113 Ga0307508_10157121 3300031616 Bacteria 1878
114 Ga0316575_10013394 3300031665 Bacteria 3062
115 Ga0316579_10000094 3300031691 Bacteria 23294
116 Ga0316579_10000487 3300031691 Bacteria 12927
117 Ga0265314_10000185 3300031711 Bacteria 92226
118 Ga0265314_10062818 3300031711 Bacteria 2523
119 Ga0265314_10088276 3300031711 Bacteria 2025
120 Ga0316576_10017791 3300031727 Bacteria 4838
121 Ga0316576_10050758 3300031727 Bacteria 3017
122 Ga0316576_10082120 3300031727 Bacteria 2392
123 Ga0316576_10146808 3300031727 Bacteria 1777
124 Ga0316578_10019651 3300031728 Bacteria 3723
125 Ga0307516_10000045 3300031730 Bacteria 132787
126 Ga0307516_10003041 3300031730 Bacteria 21897
127 Ga0307516_10013648 3300031730 Bacteria 8631
128 Ga0316577_10026129 3300031733 Bacteria 3250
129 Ga0307409_100158469 3300031995 Bacteria 1976
130 Ga0307414_10117498 3300032004 Bacteria 2038
131 Ga0316583_10001402 3300032133 Bacteria 8018
132 Ga0316583_10009757 3300032133 Bacteria 3460
133 Ga0316585_10019806 3300032137 Bacteria 2054
134 Ga0307507_10012926 3300033179 Bacteria 10232
135 Ga0316574_0092878 3300035398 Bacteria 1926
136 Ga0373924_0055812 3300035410 Bacteria 1644
137 Ga0373931_0015226 3300035691 Bacteria 3770
138 Ga0373933_0071394 3300035724 Bacteria 2114
139 Ga0373933_0128635 3300035724 Bacteria 1591
140 Ga0373937_0131016 3300036401 Bacteria 2342
141 Ga0316582_0001876 3300036647 Bacteria 9546
142 Ga0316582_0003518 3300036647 Bacteria 7695
143 Ga0316584_0004213 3300036712 Bacteria 9493
144 Ga0316584_0171056 3300036712 Bacteria 1611
145 Ga0395905_0094913 3300037471 Bacteria 2798
146 Ga0395905_0283987 3300037471 Bacteria 1541
147 Ga0395905_0313514 3300037471 Bacteria 1457
148 Ga0316581_0015659 3300037588 Bacteria 2170
149 Ga0436364_0809881 3300037853 Bacteria 5331
150 Ga0400484_19555 3300038725 Bacteria 5649
151 Ga0400488_02034 3300038741 Bacteria 20194
152 Ga0400488_20066 3300038741 Bacteria 1276
153 Ga0400486_10257 3300038742 Bacteria 1913
154 Ga0400483_012748 3300039062 Bacteria 5325
155 Ga0400483_032129 3300039062 Bacteria 24359
156 Ga0400483_066865 3300039062 Bacteria 5943
157 Ga0400483_174725 3300039062 Bacteria 16447
158 Ga0400483_224183 3300039062 Bacteria 4430
159 Ga0400483_253364 3300039062 Bacteria 2734
160 Ga0400487_12426 3300039110 Bacteria 1326
161 Ga0400487_52144 3300039110 Bacteria 3102
162 Ga0436361_0379102 3300039447 Bacteria 4456
163 Ga0436361_0387075 3300039447 Bacteria 30962
164 Ga0451577_0000002 3300042876 Bacteria 1731375
165 Ga0451577_0000235 3300042876 Bacteria 109693
166 Ga0451577_0001512 3300042876 Bacteria 30684
167 Ga0451577_0004046 3300042876 Bacteria 15768
168 Ga0451577_0011039 3300042876 Bacteria 8580
169 Ga0451577_0121324 3300042876 Bacteria 2341
170 Ga0453683_0000011 3300044673 Bacteria 412765
171 Ga0453683_0080924 3300044673 Bacteria 2035
172 Ga0466966_0028220 3300044684 Bacteria 3657
173 Ga0453684_0000002 3300044712 Bacteria 1731375
174 Ga0453684_0000040 3300044712 Bacteria 690210
175 Ga0453684_0000102 3300044712 Bacteria 366870
176 Ga0453684_0000136 3300044712 Bacteria 323402
177 Ga0453684_0000331 3300044712 Bacteria 197952
178 Ga0453684_0000906 3300044712 Bacteria 98768
179 Ga0453684_0007551 3300044712 Bacteria 19936
180 Ga0453684_0008967 3300044712 Bacteria 17675
181 Ga0453684_0011701 3300044712 Bacteria 14634
182 Ga0453684_0023284 3300044712 Bacteria 9134
183 Ga0453684_0117415 3300044712 Bacteria 3220
184 Ga0453684_0134866 3300044712 Bacteria 2958
185 Ga0466970_0070574 3300044765 Bacteria 1878
186 Ga0451576_0000004 3300045051 Bacteria 1312238
187 Ga0451576_0000013 3300045051 Bacteria 665120
188 Ga0451576_0000025 3300045051 Bacteria 427980
189 Ga0451576_0000184 3300045051 Bacteria 157166
190 Ga0451576_0001437 3300045051 Bacteria 40602
191 Ga0451576_0001775 3300045051 Bacteria 35319
192 Ga0451576_0002004 3300045051 Bacteria 32259
193 Ga0451576_0004245 3300045051 Bacteria 18809
194 Ga0451576_0011109 3300045051 Bacteria 10271
195 Ga0451576_0017682 3300045051 Bacteria 7835
196 Ga0451576_0044261 3300045051 Bacteria 4693
197 Ga0451576_0073823 3300045051 Bacteria 3550
198 Ga0451576_0077711 3300045051 Bacteria 3454
199 Ga0451576_0134974 3300045051 Bacteria 2573
200 Ga0451576_0197571 3300045051 Bacteria 2101
201 Ga0451576_0299730 3300045051 Bacteria 1681
202 Ga0495629_0010709 3300046459 Bacteria 6668
203 Ga0495651_0002680 3300046462 Bacteria 13812
204 Ga0495651_0007932 3300046462 Bacteria 8133
205 Ga0495651_0019245 3300046462 Bacteria 5291
206 Ga0495653_0075109 3300046463 Bacteria 2516
207 Ga0495580_0008077 3300046472 Bacteria 8397
208 Ga0495664_0008768 3300046477 Bacteria 5649
209 Ga0495608_0002055 3300046511 Bacteria 14478
210 Ga0495618_0029756 3300046514 Bacteria 3408
211 Ga0495628_0014408 3300046516 Bacteria 6629
212 Ga0495654_0000152 3300046530 Bacteria 70943
213 Ga0495665_0002165 3300046531 Bacteria 10624
214 Ga0495640_0012673 3300046533 Bacteria 6437
215 Ga0495640_0023470 3300046533 Bacteria 4492
216 Ga0495586_0005560 3300046535 Bacteria 6743
217 Ga0495587_0002615 3300046536 Bacteria 12030
218 Ga0495645_0012523 3300046543 Bacteria 5978
219 Ga0495667_0005020 3300046559 Bacteria 8943
220 Ga0495635_0009770 3300046663 Bacteria 6706
221 Ga0495657_0004792 3300046675 Bacteria 10783
222 Ga0495599_0021076 3300046678 Bacteria 4063
223 Ga0495646_0004638 3300046680 Bacteria 8647
224 Ga0495646_0015370 3300046680 Bacteria 4859
225 Ga0495613_0001616 3300046689 Bacteria 17152
226 Ga0495613_0006593 3300046689 Bacteria 8678
227 Ga0495613_0084158 3300046689 Bacteria 2309
228 Ga0495600_0009768 3300046809 Bacteria 5932
229 Ga0495600_0063369 3300046809 Bacteria 2415
230 Ga0495581_0015689 3300047315 Bacteria 4397
231 Ga0495604_0000981 3300047317 Bacteria 23800
232 Ga0495604_0014705 3300047317 Bacteria 6237
233 Ga0495604_0068960 3300047317 Bacteria 2681
234 Ga0495676_0022342 3300047321 Bacteria 5504
235 Ga0495680_0128847 3300047322 Bacteria 1861
236 Ga0495686_0100010 3300047472 Bacteria 1750
237 Ga0495593_0001963 3300047673 Bacteria 12258
238 Ga0495593_0014255 3300047673 Bacteria 4520
239 Ga0495593_0020910 3300047673 Bacteria 3659
240 Ga0495602_0032767 3300048088 Bacteria 4888
241 Ga0495614_0005337 3300048089 Bacteria 5798
242 Ga0496102_0029994 3300048905 Bacteria 4867
243 Ga0496102_0279177 3300048905 Bacteria 1575
244 Ga0496106_0022210 3300048909 Bacteria 4713
245 Ga0496107_0087645 3300048910 Bacteria 2272
246 Ga0496114_0129985 3300048917 Bacteria 2174
247 Ga0496116_0026390 3300048919 Bacteria 4251
248 Ga0496117_0000125 3300048920 Bacteria 168885
249 Ga0496118_0000016 3300048921 Bacteria 549586
250 Ga0496119_0019141 3300048922 Bacteria 5058
251 Ga0496120_0001773 3300048923 Bacteria 24305
252 Ga0496121_0013263 3300048924 Bacteria 8874
253 Ga0496124_0103692 3300048927 Bacteria 2300
254 Ga0496125_0016478 3300048928 Bacteria 7094
255 Ga0496125_0021886 3300048928 Bacteria 5950
256 Ga0496126_0000719 3300048929 Bacteria 60201
257 Ga0496126_0054965 3300048929 Bacteria 3603
258 Ga0501041_0021404 3300049577 Bacteria 3875
259 Ga0501041_0050282 3300049577 Bacteria 2540
260 Ga0501075_0053443 3300049591 Bacteria 3038
261 Ga0501075_0448343 3300049591 Bacteria 984
262 Ga0501076_0023094 3300049592 Bacteria 4789
263 Ga0501077_0010199 3300049593 Bacteria 5850
264 Ga0501198_000078 3300049649 Bacteria 24049
265 Ga0501222_000069 3300049662 Bacteria 30020
266 Ga0501223_009943 3300049663 Bacteria 1920
267 Ga0501080_0092335 3300049742 Bacteria 2812
268 Ga0501081_0182886 3300049743 Bacteria 1516
269 nmdc:mga06z11_2014_c1 3300050494 Bacteria 7701
270 nmdc:mga04h51_11510_c1 3300050495 Bacteria 2457
271 nmdc:mga06r32_223892_c1 3300050510 Bacteria 1869
272 Ga0495601_0017782 3300053077 Bacteria 4319
273 Ga0500640_010287 3300053095 Bacteria 3776
274 Ga0500572_000192 3300053111 Bacteria 21599
275 Ga0500618_000288 3300053125 Bacteria 38455
276 Ga0500559_0000184 3300053136 Bacteria 49756
277 Ga0500622_0069565 3300053156 Bacteria 1782
278 2501074398 2501025501 Bacteria 7768574
279 2501081902 2501025502 Bacteria 9641094
280 2501409164 2501025504 Bacteria 8008976
281 2511091809 2510917013 Bacteria 9951648
282 2511098733 2510917014 Bacteria 8296963
283 2511109188 2510917015 Bacteria 7950052
284 2512032736 2511231221 Bacteria 6846400
285 2513558422 2513237082 Bacteria 8640282
286 2513566357 2513237083 Bacteria 8410967
287 2514002614 2513237159 Bacteria 6810126
288 2515686053 2515154122 Bacteria 8609520
289 2516025099 2515154189 Bacteria 9629850
290 2519462738 2519103095 Bacteria 6629912
291 2526211354 2526164512 Bacteria 4025691
292 2574429623 2574179768 Bacteria 4907129
293 2585291786 2582581311 Bacteria 6763856
294 2599104357 2597490356 Bacteria 7030811
295 2621299547 2619619299 Bacteria 6649820
296 2686538947 2684623035 Bacteria 8032739
297 2738669575 2738541265 Bacteria 6594665
298 2738747968 2738541282 Bacteria 6593925
299 2738857010 2738541303 Bacteria 6591772
300 2811842497 2808606982 Bacteria 7791042
301 2817262615 2816332253 Bacteria 6764532
302 2817276314 2816332256 Bacteria 6891714
303 2817453756 2816332286 Bacteria 6853759
304 2817490909 2816332298 Bacteria 6852809
305 2842337424 2842333319 Bacteria 8899485
306 2846036578 2846033681 Bacteria 4377894
307 2846041579 2846037992 Bacteria 4526407
308 2846956669 2846952575 Bacteria 6587527
309 2856289673 2856287931 Bacteria 7223934
310 2856292359 2856287931 Bacteria 7223934
311 2857364405 2857357740 Bacteria 9937880
312 2870074206 2870068957 Bacteria 8925310
313 2874172840 2874168670 Bacteria 8062617
314 2874594186 2874590934 Bacteria 8299676
315 2885312453 2885305155 Bacteria 7348390
316 2885329004 2885326080 Bacteria 7134805
317 2895883020 2895880812 Bacteria 11255272
318 2902689321 2902682994 Bacteria 8951596
319 2909399586 2909399089 Bacteria 3922598
320 2919139994 2919138771 Bacteria 5281312
321 2998346378 2998344455 Bacteria 4222996
322 639788970 639633007 Bacteria 4376040
323 8002062427 8002060224 Bacteria 4026565
324 8003961658 8003955200 Bacteria 8601927
325 8018130813 8018127388 Bacteria 7351159
326 8020809744 8020807995 Bacteria 6801506
327 8040168631 8040167225 Bacteria 6542727
328 8040178266 8040173305 Bacteria 6827067
329 8054006239 8054002106 Bacteria 7987183
330 Ga0075366_10006721
331 rootH1_10024110
332 rootL2_10045808
333 Ga0070676_10004908
334 Ga0070670_100001321
335 Ga0070677_10015873
336 Ga0068869_100038865
337 Ga0070666_10083849
338 Ga0068868_100001162
339 Ga0070668_100047346
340 Ga0070675_100075285
341 Ga0070671_100021115
342 Ga0070673_100117316
343 Ga0070659_100075332
344 Ga0070667_100000179
345 Ga0070667_100204514
346 Ga0070710_10000620
347 Ga0070694_100027941
348 Ga0070663_100051109
349 Ga0070681_10030774
350 Ga0068853_100104500
351 Ga0070672_100074407
352 Ga0068857_100018399
353 Ga0068864_100029658
354 Ga0068861_100069141
355 Ga0068858_100014868
356 Ga0075367_10003070
357 Ga0075366_10007210
358 Ga0105240_10001052
359 Ga0105245_10208595
360 Ga0105248_10086519
361 Ga0157369_10307480
362 Ga0157374_10010977
363 Ga0163162_10014342
364 Ga0157375_10105286
365 Ga0163163_10062833
366 Ga0157380_10028183
367 Ga0183367_1012
368 Ga0206356_10975097
369 Ga0213872_10003563
370 Ga0209051_1020545
371 Ga0207692_10000439
372 Ga0207645_10001993
373 Ga0207643_10030639
374 Ga0207695_10000960
375 Ga0207659_10007744
376 Ga0207664_10072859
377 Ga0207644_10023355
378 Ga0207690_10105412
379 Ga0207706_10032429
380 Ga0207691_10007411
381 Ga0207691_10020010
382 Ga0207689_10002134
383 Ga0207651_10014216
384 Ga0207668_10025956
385 Ga0207658_10002976
386 Ga0207658_10038907
387 Ga0207658_10172234
388 Ga0207677_10009348
389 Ga0207703_10077123
390 Ga0207676_10019074
391 Ga0207674_10044673
392 Ga0207675_100008048
393 Ga0207675_100290722
394 Ga0207698_10107879
395 Ga0209813_10009885
396 Ga0268264_10020179
397 Ga0265334_10045043
398 Ga0265336_10000097
399 Ga0265336_10047811
400 Ga0307517_10020464
401 Ga0265324_10000001
402 Ga0265324_10000160
403 Ga0265324_10001503
404 Ga0265324_10013777
405 Ga0265324_10022831
406 Ga0265330_10000062
407 Ga0265330_10001223
408 Ga0265330_10028192
409 Ga0265332_10000339
410 Ga0265328_10007439
411 Ga0265328_10022324
412 Ga0265328_10025422
413 Ga0265320_10004931
414 Ga0265325_10001227
415 Ga0265325_10012403
416 Ga0265325_10013925
417 Ga0265325_10015262
418 Ga0265329_10012165
419 Ga0265331_10000554
420 Ga0265331_10002660
421 Ga0265331_10012006
422 Ga0265331_10028456
423 Ga0265327_10000205
424 Ga0265327_10000283
425 Ga0265327_10001775
426 Ga0265327_10007312
427 Ga0265327_10013757
428 Ga0265327_10018848
429 Ga0265327_10025954
430 Ga0265327_10029629
431 Ga0265327_10030619
432 Ga0265327_10039189
433 Ga0265327_10058014
434 Ga0265327_10058604
435 Ga0265316_10020902
436 Ga0265316_10043470
437 Ga0265316_10155793
438 Ga0265316_10160210
439 Ga0265316_10200448
440 Ga0307508_10000414
441 Ga0307508_10067283
442 Ga0307508_10157121
443 Ga0316575_10013394
444 Ga0316579_10000094
445 Ga0316579_10000487
446 Ga0265314_10000185
447 Ga0265314_10062818
448 Ga0265314_10088276
449 Ga0316576_10017791
450 Ga0316576_10050758
451 Ga0316576_10082120
452 Ga0316576_10146808
453 Ga0316578_10019651
454 Ga0307516_10000045
455 Ga0307516_10003041
456 Ga0307516_10013648
457 Ga0316577_10026129
458 Ga0307409_100158469
459 Ga0307414_10117498
460 Ga0316583_10001402
461 Ga0316583_10009757
462 Ga0316585_10019806
463 Ga0307507_10012926
464 Ga0316574_0092878
465 Ga0373924_0055812
466 Ga0373931_0015226
467 Ga0373933_0071394
468 Ga0373933_0128635
469 Ga0373937_0131016
470 Ga0316582_0001876
471 Ga0316582_0003518
472 Ga0316584_0004213
473 Ga0316584_0171056
474 Ga0395905_0094913
475 Ga0395905_0283987
476 Ga0395905_0313514
477 Ga0316581_0015659
478 Ga0436364_0809881
479 Ga0400484_19555
480 Ga0400488_02034
481 Ga0400488_20066
482 Ga0400486_10257
483 Ga0400483_012748
484 Ga0400483_032129
485 Ga0400483_066865
486 Ga0400483_174725
487 Ga0400483_224183
488 Ga0400483_253364
489 Ga0400487_12426
490 Ga0400487_52144
491 Ga0436361_0379102
492 Ga0436361_0387075
493 Ga0451577_0000002
494 Ga0451577_0000235
495 Ga0451577_0001512
496 Ga0451577_0004046
497 Ga0451577_0011039
498 Ga0451577_0121324
499 Ga0453683_0000011
500 Ga0453683_0080924
501 Ga0466966_0028220
502 Ga0453684_0000002
503 Ga0453684_0000040
504 Ga0453684_0000102
505 Ga0453684_0000136
506 Ga0453684_0000331
507 Ga0453684_0000906
508 Ga0453684_0007551
509 Ga0453684_0008967
510 Ga0453684_0011701
511 Ga0453684_0023284
512 Ga0453684_0117415
513 Ga0453684_0134866
514 Ga0466970_0070574
515 Ga0451576_0000004
516 Ga0451576_0000013
517 Ga0451576_0000025
518 Ga0451576_0000184
519 Ga0451576_0001437
520 Ga0451576_0001775
521 Ga0451576_0002004
522 Ga0451576_0004245
523 Ga0451576_0011109
524 Ga0451576_0017682
525 Ga0451576_0044261
526 Ga0451576_0073823
527 Ga0451576_0077711
528 Ga0451576_0134974
529 Ga0451576_0197571
530 Ga0451576_0299730
531 Ga0495629_0010709
532 Ga0495651_0002680
533 Ga0495651_0007932
534 Ga0495651_0019245
535 Ga0495653_0075109
536 Ga0495580_0008077
537 Ga0495664_0008768
538 Ga0495608_0002055
539 Ga0495618_0029756
540 Ga0495628_0014408
541 Ga0495654_0000152
542 Ga0495665_0002165
543 Ga0495640_0012673
544 Ga0495640_0023470
545 Ga0495586_0005560
546 Ga0495587_0002615
547 Ga0495645_0012523
548 Ga0495667_0005020
549 Ga0495635_0009770
550 Ga0495657_0004792
551 Ga0495599_0021076
552 Ga0495646_0004638
553 Ga0495646_0015370
554 Ga0495613_0001616
555 Ga0495613_0006593
556 Ga0495613_0084158
557 Ga0495600_0009768
558 Ga0495600_0063369
559 Ga0495581_0015689
560 Ga0495604_0000981
561 Ga0495604_0014705
562 Ga0495604_0068960
563 Ga0495676_0022342
564 Ga0495680_0128847
565 Ga0495686_0100010
566 Ga0495593_0001963
567 Ga0495593_0014255
568 Ga0495593_0020910
569 Ga0495602_0032767
570 Ga0495614_0005337
571 Ga0496102_0029994
572 Ga0496102_0279177
573 Ga0496106_0022210
574 Ga0496107_0087645
575 Ga0496114_0129985
576 Ga0496116_0026390
577 Ga0496117_0000125
578 Ga0496118_0000016
579 Ga0496119_0019141
580 Ga0496120_0001773
581 Ga0496121_0013263
582 Ga0496124_0103692
583 Ga0496125_0016478
584 Ga0496125_0021886
585 Ga0496126_0000719
586 Ga0496126_0054965
587 Ga0501041_0021404
588 Ga0501041_0050282
589 Ga0501075_0053443
590 Ga0501075_0448343
591 Ga0501076_0023094
592 Ga0501077_0010199
593 Ga0501198_000078
594 Ga0501222_000069
595 Ga0501223_009943
596 Ga0501080_0092335
597 Ga0501081_0182886
598 nmdc:mga06z11_2014_c1
599 nmdc:mga04h51_11510_c1
600 nmdc:mga06r32_223892_c1
601 Ga0495601_0017782
602 Ga0500640_010287
603 Ga0500572_000192
604 Ga0500618_000288
605 Ga0500559_0000184
606 Ga0500622_0069565
607 2501074398
608 2501081902
609 2501409164
610 2511091809
611 2511098733
612 2511109188
613 2512032736
614 2513558422
615 2513566357
616 2514002614
617 2515686053
618 2516025099
619 2519462738
620 2526211354
621 2574429623
622 2585291786
623 2599104357
624 2621299547
625 2686538947
626 2738669575
627 2738747968
628 2738857010
629 2811842497
630 2817262615
631 2817276314
632 2817453756
633 2817490909
634 2842337424
635 2846036578
636 2846041579
637 2846956669
638 2856289673
639 2856292359
640 2857364405
641 2870074206
642 2874172840
643 2874594186
644 2885312453
645 2885329004
646 2895883020
647 2902689321
648 2909399586
649 2919139994
650 2998346378
651 639788970
652 8002062427
653 8003961658
654 8018130813
655 8020809744
656 8040168631
657 8040178266
658 8054006239

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01924

HypD

Hydrogenase formation hypA family

122

395

0.98

PF01924

HypD

Hydrogenase formation hypA family

11

104

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.9529 5 359
3vys-assembly1.cif.gz_B crystal structure of the hypc-hypd-hype complex (form i) 0.9249 5 359
1ys7-assembly1.cif.gz_A crystal structure of the response regulator protein prra complexed with mg2+ 0.5066 83 191
8k3b-assembly1.cif.gz_A-2 the pseudomonas aeruginosa rccr protein complexed with kdpg 0.4652 67 169
3l49-assembly1.cif.gz_A crystal structure of abc sugar transporter subunit from rhodobacter sphaeroides 2.4.1 0.4386 12 195
ID Description Score Start End Superfamily
af_P24192_73_194_3.40.50.11740 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.9879 66 186 3.40.50.11740
3vyuB03 Special;Helix non-globular;Arc Repressor Mutant, subunit A; 0.9786 310 359 6.10.20.100
af_P24192_73_194_3.40.50.11740 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 2 0.972 66 186 3.40.50.11740
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.9623 107 256 3.40.50.11750
af_Q58400_104_253_3.40.50.11750 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HypD, alpha/beta domain 1 0.9499 107 256 3.40.50.11750
ID Description Score Start End GO Terms
AF-A0A0M8R747-F1-model_v4 deleted 1.004 62 163
AF-A0A2S8NMP8-F1-model_v4 deleted 1.001 62 136
AF-A0A0M8REA5-F1-model_v4 deleted 0.999 150 245
AF-A0A5E6NQW7-F1-model_v4 [NiFe] hydrogenase metallocenter assembly protein HypD 0.9981 73 136 GO:0005506
GO:0051539
GO:0051604
GO:0070025
AF-A0A6V8NJW4-F1-model_v4 Hydrogenase expression/formation protein HypD 0.9947 84 159 GO:0005506
GO:0051539
GO:0051604
GO:0070025

Map