F400808

General Info

Members Datasets Scaffolds Average Seq Length
310 193 620 208

Family's Representative Sequence

Representative Sequence 3300035398|Ga0316574_0004675|Ga0316574_0004675_4708_5433
Length 241
Sequence MYKTKKPHFSHSLKKPNNLKDNREMTDSYPMNGAQNTRALNLVPIVVEQTARGERSYDIYSRLLKERVIFMVGPVEDYMANVIVAQMLFLESENPDKDIHLYINSPGGSVTAGLAIYDTMQFIKADVSTMCIGQAASMGALLLSGGAKGKRNCLPHSRVMIHQPLGGFQGQATDIDIHAREILLIREKLNLILSNHTGQPLEKIRDDTDRDHFLGAEEAKAYGLIDEIINQRTDATGPGTS

Samples

Sample ID Description Type Environment
1 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
35 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
91 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
94 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
95 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
96 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
97 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
98 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
99 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
102 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
103 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
104 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
105 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
106 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
107 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
108 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
109 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
110 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
111 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
112 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
113 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
114 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
115 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
116 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
123 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
124 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
125 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
126 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
127 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
128 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
129 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
130 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
131 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
132 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
133 3300041508 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaT Metatranscriptome Unclassified
134 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
135 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
136 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
137 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
138 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
139 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
140 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
141 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
142 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
143 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
144 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
145 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
146 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
147 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
148 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
149 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
150 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
151 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
152 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
153 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
154 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
155 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
156 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
157 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
158 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
161 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
162 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
166 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
167 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
168 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
169 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
170 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
171 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
172 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
173 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
174 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
175 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
176 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
177 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
178 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
179 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
180 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
181 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
182 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
183 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
184 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
185 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
186 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
187 2600255389 Pseudomonas sp. NFPP33 Isolate Rhizoplane
188 2823421272 Pseudomonas mendocina S5.2 Isolate Rhizoplane
189 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
190 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
191 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
192 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
193 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.42
Metatranscriptomes 10
Isolates 2.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.61
Nodule 0
Rhizoplane 1.94
Rhizosphere 93.87
Stem 0
Stem Tuber 0
Unclassified 1.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316574_0004675 3300035398 Bacteria 7210
2 Ga0070676_10516726 3300005328 Bacteria 850
3 Ga0070683_100002466 3300005329 Bacteria 14728
4 Ga0070670_100569172 3300005331 Bacteria 1012
5 Ga0068869_100273132 3300005334 Bacteria 1357
6 Ga0068868_100568630 3300005338 Bacteria 1001
7 Ga0070669_100548499 3300005353 Bacteria 964
8 Ga0070688_100015719 3300005365 Bacteria 4312
9 Ga0070688_100208554 3300005365 Bacteria 1371
10 Ga0070703_10047820 3300005406 Bacteria 1356
11 Ga0070709_10045353 3300005434 Bacteria 2727
12 Ga0070701_10069307 3300005438 Bacteria 1881
13 Ga0070705_100386299 3300005440 Bacteria 1032
14 Ga0070705_100490344 3300005440 Bacteria 930
15 Ga0070700_100022489 3300005441 Bacteria 3677
16 Ga0070700_100091480 3300005441 Bacteria 1986
17 Ga0070700_100472330 3300005441 Bacteria 959
18 Ga0070694_100469160 3300005444 Bacteria 997
19 Ga0070708_100143755 3300005445 Bacteria 2214
20 Ga0068867_100586083 3300005459 Bacteria 971
21 Ga0070685_10012558 3300005466 Bacteria 4452
22 Ga0070699_100369370 3300005518 Bacteria 1294
23 Ga0070684_100000102 3300005535 Bacteria 55387
24 Ga0070684_101117002 3300005535 Bacteria 741
25 Ga0068853_100801412 3300005539 Bacteria 902
26 Ga0070695_100055943 3300005545 Bacteria 2544
27 Ga0070693_100691681 3300005547 Bacteria 746
28 Ga0070665_100509716 3300005548 Bacteria 1215
29 Ga0070704_100058414 3300005549 Bacteria 2747
30 Ga0070664_100468540 3300005564 Bacteria 1158
31 Ga0068857_100007774 3300005577 Bacteria 9239
32 Ga0068857_100404867 3300005577 Bacteria 1270
33 Ga0068856_100280558 3300005614 Bacteria 1683
34 Ga0068859_100025834 3300005617 Bacteria 5892
35 Ga0068859_100084520 3300005617 Bacteria 3219
36 Ga0068864_100014295 3300005618 Bacteria 6593
37 Ga0068864_100277453 3300005618 Bacteria 1563
38 Ga0068858_100003699 3300005842 Bacteria 15148
39 Ga0068858_100443768 3300005842 Bacteria 1250
40 Ga0068860_100852681 3300005843 Bacteria 926
41 Ga0068862_100031435 3300005844 Bacteria 4481
42 Ga0068862_100109843 3300005844 Bacteria 2420
43 Ga0081455_10101254 3300005937 Bacteria 2312
44 Ga0081540_1057972 3300005983 Bacteria 1869
45 Ga0075432_10078790 3300006058 Bacteria 1192
46 Ga0070716_100003630 3300006173 Bacteria 7293
47 Ga0075369_10184012 3300006186 Bacteria 962
48 Ga0075428_100259756 3300006844 Bacteria 1870
49 Ga0075430_100068039 3300006846 Bacteria 2988
50 Ga0075430_100313417 3300006846 Unclassified 1297
51 Ga0075431_100041665 3300006847 Bacteria 4734
52 Ga0075433_10181882 3300006852 Bacteria 1871
53 Ga0075434_100070785 3300006871 Bacteria 3478
54 Ga0075434_100974838 3300006871 Bacteria 862
55 Ga0075429_100015198 3300006880 Bacteria 6672
56 Ga0068865_100079548 3300006881 Bacteria 2348
57 Ga0068865_100717862 3300006881 Bacteria 856
58 Ga0075436_100241441 3300006914 Bacteria 1285
59 Ga0097620_100025834 3300006931 Bacteria 5892
60 Ga0097620_100084517 3300006931 Bacteria 3219
61 Ga0075435_100085374 3300007076 Bacteria 2598
62 Ga0075435_100338532 3300007076 Bacteria 1289
63 Ga0111539_10004682 3300009094 Bacteria 17880
64 Ga0111539_10014327 3300009094 Bacteria 9900
65 Ga0105245_10147485 3300009098 Bacteria 2221
66 Ga0114129_10250836 3300009147 Bacteria 2376
67 Ga0114129_10760584 3300009147 Bacteria 1239
68 Ga0114129_11327419 3300009147 Bacteria 890
69 Ga0105243_10123738 3300009148 Bacteria 2185
70 Ga0105243_10195072 3300009148 Bacteria 1772
71 Ga0105242_10571408 3300009176 Bacteria 1087
72 Ga0105248_10101603 3300009177 Bacteria 3241
73 Ga0105249_10299007 3300009553 Bacteria 1613
74 Ga0105249_10596183 3300009553 Bacteria 1159
75 Ga0105246_10046695 3300011119 Bacteria 2955
76 Ga0163163_10253881 3300014325 Bacteria 1809
77 Ga0157377_10065390 3300014745 Bacteria 2089
78 Ga0157379_10054110 3300014968 Bacteria 3586
79 Ga0197907_10835216 3300020069 Bacteria 944
80 Ga0206356_10048328 3300020070 Bacteria 1017
81 Ga0206356_11340249 3300020070 Bacteria 948
82 Ga0206353_10248099 3300020082 Bacteria 9753
83 Ga0224712_10068088 3300022467 Bacteria 1438
84 Ga0224712_10314272 3300022467 Bacteria 735
85 Ga0207653_10041745 3300025885 Bacteria 1507
86 Ga0207688_10573622 3300025901 Bacteria 710
87 Ga0207707_10269855 3300025912 Bacteria 1475
88 Ga0207695_10345174 3300025913 Bacteria 1376
89 Ga0207660_10697300 3300025917 Bacteria 828
90 Ga0207657_10209082 3300025919 Bacteria 1567
91 Ga0207646_10636809 3300025922 Bacteria 956
92 Ga0207709_10079060 3300025935 Bacteria 2113
93 Ga0207709_10092149 3300025935 Bacteria 1983
94 Ga0207670_10094573 3300025936 Bacteria 2120
95 Ga0207704_10450481 3300025938 Bacteria 1027
96 Ga0207691_10221983 3300025940 Bacteria 1638
97 Ga0207711_10072691 3300025941 Bacteria 2988
98 Ga0207661_10941693 3300025944 Bacteria 795
99 Ga0207679_10408465 3300025945 Bacteria 1196
100 Ga0207667_10201117 3300025949 Bacteria 2044
101 Ga0207712_10186973 3300025961 Bacteria 1632
102 Ga0207658_10517412 3300025986 Bacteria 1065
103 Ga0207703_10002523 3300026035 Bacteria 15820
104 Ga0207703_10120415 3300026035 Bacteria 2253
105 Ga0207708_10007631 3300026075 Bacteria 8005
106 Ga0207708_10499054 3300026075 Bacteria 1020
107 Ga0207648_10082061 3300026089 Bacteria 2811
108 Ga0207676_10041262 3300026095 Bacteria 3541
109 Ga0207676_10256005 3300026095 Bacteria 1578
110 Ga0207674_10001570 3300026116 Bacteria 29428
111 Ga0207674_10306480 3300026116 Bacteria 1537
112 Ga0207675_100080471 3300026118 Bacteria 3054
113 Ga0209995_1002799 3300027471 Bacteria 2765
114 Ga0209995_1022200 3300027471 Bacteria 1053
115 Ga0209968_1006382 3300027526 Bacteria 1775
116 Ga0209999_1001971 3300027543 Bacteria 3578
117 Ga0209974_10020790 3300027876 Bacteria 2175
118 Ga0207428_10015078 3300027907 Bacteria 6693
119 Ga0207428_10024239 3300027907 Bacteria 5097
120 Ga0268265_10054694 3300028380 Bacteria 3030
121 Ga0268264_10057740 3300028381 Bacteria 3247
122 Ga0268264_10713490 3300028381 Bacteria 997
123 Ga0265322_10001226 3300028654 Bacteria 8721
124 Ga0265336_10039856 3300028666 Bacteria 1439
125 Ga0265336_10114193 3300028666 Bacteria 804
126 Ga0265332_10054185 3300031238 Bacteria 1721
127 Ga0265340_10075684 3300031247 Bacteria 1590
128 Ga0265331_10043076 3300031250 Bacteria 2188
129 Ga0265327_10003721 3300031251 Bacteria 14196
130 Ga0265327_10104517 3300031251 Bacteria 1361
131 Ga0307513_10000012 3300031456 Bacteria 328865
132 Ga0307408_100000004 3300031548 Bacteria 572889
133 Ga0316575_10005539 3300031665 Bacteria 4504
134 Ga0316575_10024396 3300031665 Bacteria 2341
135 Ga0316575_10128061 3300031665 Bacteria 1041
136 Ga0316575_10163313 3300031665 Bacteria 921
137 Ga0316575_10164660 3300031665 Bacteria 918
138 Ga0316579_10052586 3300031691 Bacteria 1907
139 Ga0316579_10087190 3300031691 Bacteria 1489
140 Ga0316579_10090713 3300031691 Bacteria 1459
141 Ga0316579_10125172 3300031691 Bacteria 1236
142 Ga0316579_10265570 3300031691 Bacteria 830
143 Ga0265314_10073212 3300031711 Bacteria 2285
144 Ga0316576_10002828 3300031727 Bacteria 9991
145 Ga0316576_10002947 3300031727 Bacteria 9864
146 Ga0316576_10019828 3300031727 Bacteria 4613
147 Ga0316576_10079427 3300031727 Bacteria 2432
148 Ga0316576_10084505 3300031727 Bacteria 2359
149 Ga0316578_10006840 3300031728 Bacteria 5662
150 Ga0316578_10020453 3300031728 Bacteria 3657
151 Ga0316578_10044329 3300031728 Bacteria 2587
152 Ga0316578_10062303 3300031728 Bacteria 2199
153 Ga0316578_10142656 3300031728 Bacteria 1443
154 Ga0316578_10215288 3300031728 Bacteria 1155
155 Ga0316577_10005919 3300031733 Bacteria 6439
156 Ga0316577_10018335 3300031733 Bacteria 3870
157 Ga0316577_10092472 3300031733 Bacteria 1693
158 Ga0316577_10130684 3300031733 Bacteria 1413
159 Ga0316577_10408757 3300031733 Bacteria 771
160 Ga0307413_10780004 3300031824 Bacteria 801
161 Ga0307410_10227182 3300031852 Bacteria 1439
162 Ga0307410_10377315 3300031852 Bacteria 1140
163 Ga0307410_10434277 3300031852 Bacteria 1068
164 Ga0307412_10248426 3300031911 Bacteria 1380
165 Ga0307412_10632095 3300031911 Bacteria 911
166 Ga0307409_100749998 3300031995 Bacteria 980
167 Ga0307416_100075530 3300032002 Bacteria 2820
168 Ga0307415_100201701 3300032126 Bacteria 1579
169 Ga0307415_100245280 3300032126 Bacteria 1452
170 Ga0316583_10010285 3300032133 Bacteria 3372
171 Ga0316583_10016798 3300032133 Bacteria 2632
172 Ga0316583_10104883 3300032133 Bacteria 985
173 Ga0316585_10012812 3300032137 Bacteria 2490
174 Ga0316580_10006577 3300032139 Bacteria 3435
175 Ga0316580_10007678 3300032139 Bacteria 3218
176 Ga0316580_10040189 3300032139 Bacteria 1445
177 Ga0316593_10002358 3300032168 Bacteria 4444
178 Ga0316593_10002369 3300032168 Bacteria 4439
179 Ga0316593_10002390 3300032168 Bacteria 4431
180 Ga0316593_10002726 3300032168 Bacteria 4258
181 Ga0316593_10008487 3300032168 Bacteria 2867
182 Ga0316593_10010089 3300032168 Bacteria 2695
183 Ga0316593_10013759 3300032168 Bacteria 2402
184 Ga0316593_10015843 3300032168 Bacteria 2276
185 Ga0316593_10048740 3300032168 Bacteria 1426
186 Ga0316592_1003091 3300033524 Bacteria 2954
187 Ga0316592_1016969 3300033524 Bacteria 1526
188 Ga0316586_1000924 3300033527 Bacteria 3116
189 Ga0316586_1001138 3300033527 Bacteria 2918
190 Ga0316588_1005793 3300033528 Bacteria 2432
191 Ga0316588_1030105 3300033528 Bacteria 1272
192 Ga0316587_1009336 3300033529 Bacteria 1555
193 Ga0316587_1021928 3300033529 Bacteria 1092
194 Ga0316596_1000837 3300033541 Bacteria 5736
195 Ga0316596_1001536 3300033541 Bacteria 4697
196 Ga0316596_1032093 3300033541 Bacteria 1366
197 Ga0316596_1036517 3300033541 Bacteria 1284
198 Ga0316596_1052175 3300033541 Bacteria 1083
199 Ga0316596_1055856 3300033541 Bacteria 1049
200 Ga0316596_1060934 3300033541 Bacteria 1006
201 Ga0373952_0041391 3300035092 Bacteria 1066
202 Ga0316574_0009903 3300035398 Bacteria 5359
203 Ga0316574_0018270 3300035398 Bacteria 4118
204 Ga0316574_0025231 3300035398 Bacteria 3566
205 Ga0316574_0031703 3300035398 Bacteria 3207
206 Ga0316574_0035016 3300035398 Bacteria 3066
207 Ga0316574_0241604 3300035398 Bacteria 1154
208 Ga0316574_0309222 3300035398 Bacteria 1004
209 Ga0316574_0667570 3300035398 Bacteria 639
210 Ga0373937_0313618 3300036401 Bacteria 1484
211 Ga0316582_0004702 3300036647 Bacteria 6942
212 Ga0316582_0026471 3300036647 Bacteria 3492
213 Ga0316582_0052485 3300036647 Bacteria 2592
214 Ga0316582_0068469 3300036647 Bacteria 2292
215 Ga0316582_0109973 3300036647 Bacteria 1833
216 Ga0316582_0165372 3300036647 Bacteria 1500
217 Ga0316582_0280587 3300036647 Bacteria 1143
218 Ga0316582_0320180 3300036647 Bacteria 1066
219 Ga0316584_0016102 3300036712 Bacteria 5356
220 Ga0316584_0042161 3300036712 Bacteria 3402
221 Ga0316584_0149180 3300036712 Bacteria 1741
222 Ga0316584_0554131 3300036712 Bacteria 802
223 Ga0316584_0593677 3300036712 Unclassified 769
224 Ga0316581_0000636 3300037588 Bacteria 7016
225 Ga0316581_0001198 3300037588 Bacteria 5706
226 Ga0316581_0023156 3300037588 Bacteria 1836
227 Ga0316581_0057571 3300037588 Bacteria 1192
228 Ga0395901_0326528 3300038443 Bacteria 1587
229 Ga0400483_037366 3300039062 Bacteria 1173
230 Ga0400489_93069 3300039093 Bacteria 2771
231 Ga0436362_0622689 3300039453 Bacteria 937
232 Ga0451795_1524593 3300041456 Bacteria 688
233 Ga0451807_0767026 3300041486 Bacteria 2362
234 Ga0451852_21957 3300041508 Bacteria 829
235 Ga0439464_0021109 3300042439 Bacteria 1786
236 Ga0451577_0223629 3300042876 Bacteria 1701
237 Ga0451577_0233552 3300042876 Bacteria 1663
238 Ga0451577_0979391 3300042876 Unclassified 760
239 Ga0466965_0040104 3300044683 Bacteria 2304
240 Ga0466966_0001728 3300044684 Bacteria 14118
241 Ga0466961_0010105 3300044693 Bacteria 6012
242 Ga0466963_0191518 3300044694 Bacteria 1429
243 Ga0453684_0094988 3300044712 Bacteria 3666
244 Ga0453684_0303366 3300044712 Bacteria 1814
245 Ga0453684_0730943 3300044712 Unclassified 1073
246 Ga0466957_0008774 3300044842 Bacteria 5754
247 Ga0466959_0009511 3300045049 Bacteria 6915
248 Ga0451576_0065597 3300045051 Bacteria 3780
249 Ga0451576_0109872 3300045051 Bacteria 2869
250 Ga0451576_0132198 3300045051 Bacteria 2602
251 Ga0466958_0004728 3300045836 Bacteria 7236
252 Ga0495638_0289014 3300046460 Bacteria 888
253 Ga0495582_0418767 3300046473 Bacteria 773
254 Ga0495639_0022999 3300046475 Bacteria 2737
255 Ga0495596_0193605 3300046500 Bacteria 790
256 Ga0495616_0001840 3300046513 Bacteria 14361
257 Ga0495640_0387064 3300046533 Bacteria 860
258 Ga0495625_0082485 3300046660 Bacteria 2236
259 Ga0495661_0131935 3300046665 Bacteria 1368
260 Ga0495588_0042139 3300046674 Bacteria 2333
261 Ga0495624_0226275 3300046690 Bacteria 1134
262 Ga0495581_0065838 3300047315 Bacteria 2095
263 Ga0495672_0157341 3300047320 Bacteria 1172
264 Ga0495686_0180484 3300047472 Bacteria 1223
265 Ga0496100_0811300 3300048903 Bacteria 733
266 Ga0496122_0009054 3300048925 Bacteria 10566
267 Ga0496126_0071651 3300048929 Bacteria 3084
268 Ga0501037_0004790 3300049573 Bacteria 9838
269 Ga0501037_0020467 3300049573 Bacteria 4885
270 Ga0501038_0025940 3300049574 Bacteria 5220
271 Ga0501039_0308903 3300049575 Bacteria 1243
272 Ga0501046_0016233 3300049580 Bacteria 6243
273 Ga0501068_0708283 3300049584 Bacteria 658
274 Ga0501070_0017046 3300049586 Bacteria 6096
275 Ga0501070_0094095 3300049586 Bacteria 2479
276 Ga0501072_0163184 3300049588 Bacteria 1778
277 Ga0501073_0205005 3300049589 Bacteria 1363
278 Ga0501073_0566898 3300049589 Bacteria 784
279 Ga0501074_0001860 3300049590 Bacteria 14487
280 Ga0501075_0112722 3300049591 Bacteria 2068
281 Ga0501080_0001101 3300049742 Bacteria 22270
282 Ga0501083_0061227 3300049744 Bacteria 2513
283 Ga0501083_0064123 3300049744 Bacteria 2449
284 nmdc:mga05p37_1058312_c1 3300050507 Bacteria 855
285 nmdc:mga09592_38165_c1 3300050508 Bacteria 4031
286 nmdc:mga0qj67_273947_c1 3300050509 Unclassified 1368
287 nmdc:mga0qj67_84451_c1 3300050509 Bacteria 2546
288 nmdc:mga06r32_570030_c1 3300050510 Bacteria 1105
289 nmdc:mga08y16_24361_c1 3300050511 Bacteria 6388
290 nmdc:mga08y16_97009_c1 3300050511 Bacteria 3070
291 nmdc:mga0n895_106240_c1 3300050512 Bacteria 2820
292 nmdc:mga0n895_1090436_c1 3300050512 Bacteria 776
293 nmdc:mga0n895_181233_c1 3300050512 Bacteria 2138
294 nmdc:mga0n895_533650_c1 3300050512 Bacteria 1180
295 nmdc:mga0rr50_113142_c1 3300050513 Bacteria 2150
296 nmdc:mga0rr50_63416_c1 3300050513 Bacteria 2791
297 nmdc:mga08x19_341201_c1 3300050514 Bacteria 1045
298 nmdc:mga0a205_211773_c1 3300050515 Bacteria 1826
299 Ga0500638_061454 3300053162 Bacteria 1805
300 Ga0500611_015506 3300053727 Bacteria 1351
301 Ga0500645_000007 3300053730 Bacteria 233700
302 Ga0500661_007189 3300055283 Bacteria 2066
303 2600444429 2600254954 Bacteria 5100516
304 2602011514 2600255389 Bacteria 5275336
305 2823423969 2823421272 Bacteria 5372474
306 2883294300 2883291878 Bacteria 5894118
307 2883357176 2883354860 Bacteria 5865246
308 2919503183 2919501602 Bacteria 5286340
309 2926066246 2926063275 Bacteria 5285848
310 3001269177 3001267043 Bacteria 4823521
311 Ga0316574_0004675
312 Ga0070676_10516726
313 Ga0070683_100002466
314 Ga0070670_100569172
315 Ga0068869_100273132
316 Ga0068868_100568630
317 Ga0070669_100548499
318 Ga0070688_100015719
319 Ga0070688_100208554
320 Ga0070703_10047820
321 Ga0070709_10045353
322 Ga0070701_10069307
323 Ga0070705_100386299
324 Ga0070705_100490344
325 Ga0070700_100022489
326 Ga0070700_100091480
327 Ga0070700_100472330
328 Ga0070694_100469160
329 Ga0070708_100143755
330 Ga0068867_100586083
331 Ga0070685_10012558
332 Ga0070699_100369370
333 Ga0070684_100000102
334 Ga0070684_101117002
335 Ga0068853_100801412
336 Ga0070695_100055943
337 Ga0070693_100691681
338 Ga0070665_100509716
339 Ga0070704_100058414
340 Ga0070664_100468540
341 Ga0068857_100007774
342 Ga0068857_100404867
343 Ga0068856_100280558
344 Ga0068859_100025834
345 Ga0068859_100084520
346 Ga0068864_100014295
347 Ga0068864_100277453
348 Ga0068858_100003699
349 Ga0068858_100443768
350 Ga0068860_100852681
351 Ga0068862_100031435
352 Ga0068862_100109843
353 Ga0081455_10101254
354 Ga0081540_1057972
355 Ga0075432_10078790
356 Ga0070716_100003630
357 Ga0075369_10184012
358 Ga0075428_100259756
359 Ga0075430_100068039
360 Ga0075430_100313417
361 Ga0075431_100041665
362 Ga0075433_10181882
363 Ga0075434_100070785
364 Ga0075434_100974838
365 Ga0075429_100015198
366 Ga0068865_100079548
367 Ga0068865_100717862
368 Ga0075436_100241441
369 Ga0097620_100025834
370 Ga0097620_100084517
371 Ga0075435_100085374
372 Ga0075435_100338532
373 Ga0111539_10004682
374 Ga0111539_10014327
375 Ga0105245_10147485
376 Ga0114129_10250836
377 Ga0114129_10760584
378 Ga0114129_11327419
379 Ga0105243_10123738
380 Ga0105243_10195072
381 Ga0105242_10571408
382 Ga0105248_10101603
383 Ga0105249_10299007
384 Ga0105249_10596183
385 Ga0105246_10046695
386 Ga0163163_10253881
387 Ga0157377_10065390
388 Ga0157379_10054110
389 Ga0197907_10835216
390 Ga0206356_10048328
391 Ga0206356_11340249
392 Ga0206353_10248099
393 Ga0224712_10068088
394 Ga0224712_10314272
395 Ga0207653_10041745
396 Ga0207688_10573622
397 Ga0207707_10269855
398 Ga0207695_10345174
399 Ga0207660_10697300
400 Ga0207657_10209082
401 Ga0207646_10636809
402 Ga0207709_10079060
403 Ga0207709_10092149
404 Ga0207670_10094573
405 Ga0207704_10450481
406 Ga0207691_10221983
407 Ga0207711_10072691
408 Ga0207661_10941693
409 Ga0207679_10408465
410 Ga0207667_10201117
411 Ga0207712_10186973
412 Ga0207658_10517412
413 Ga0207703_10002523
414 Ga0207703_10120415
415 Ga0207708_10007631
416 Ga0207708_10499054
417 Ga0207648_10082061
418 Ga0207676_10041262
419 Ga0207676_10256005
420 Ga0207674_10001570
421 Ga0207674_10306480
422 Ga0207675_100080471
423 Ga0209995_1002799
424 Ga0209995_1022200
425 Ga0209968_1006382
426 Ga0209999_1001971
427 Ga0209974_10020790
428 Ga0207428_10015078
429 Ga0207428_10024239
430 Ga0268265_10054694
431 Ga0268264_10057740
432 Ga0268264_10713490
433 Ga0265322_10001226
434 Ga0265336_10039856
435 Ga0265336_10114193
436 Ga0265332_10054185
437 Ga0265340_10075684
438 Ga0265331_10043076
439 Ga0265327_10003721
440 Ga0265327_10104517
441 Ga0307513_10000012
442 Ga0307408_100000004
443 Ga0316575_10005539
444 Ga0316575_10024396
445 Ga0316575_10128061
446 Ga0316575_10163313
447 Ga0316575_10164660
448 Ga0316579_10052586
449 Ga0316579_10087190
450 Ga0316579_10090713
451 Ga0316579_10125172
452 Ga0316579_10265570
453 Ga0265314_10073212
454 Ga0316576_10002828
455 Ga0316576_10002947
456 Ga0316576_10019828
457 Ga0316576_10079427
458 Ga0316576_10084505
459 Ga0316578_10006840
460 Ga0316578_10020453
461 Ga0316578_10044329
462 Ga0316578_10062303
463 Ga0316578_10142656
464 Ga0316578_10215288
465 Ga0316577_10005919
466 Ga0316577_10018335
467 Ga0316577_10092472
468 Ga0316577_10130684
469 Ga0316577_10408757
470 Ga0307413_10780004
471 Ga0307410_10227182
472 Ga0307410_10377315
473 Ga0307410_10434277
474 Ga0307412_10248426
475 Ga0307412_10632095
476 Ga0307409_100749998
477 Ga0307416_100075530
478 Ga0307415_100201701
479 Ga0307415_100245280
480 Ga0316583_10010285
481 Ga0316583_10016798
482 Ga0316583_10104883
483 Ga0316585_10012812
484 Ga0316580_10006577
485 Ga0316580_10007678
486 Ga0316580_10040189
487 Ga0316593_10002358
488 Ga0316593_10002369
489 Ga0316593_10002390
490 Ga0316593_10002726
491 Ga0316593_10008487
492 Ga0316593_10010089
493 Ga0316593_10013759
494 Ga0316593_10015843
495 Ga0316593_10048740
496 Ga0316592_1003091
497 Ga0316592_1016969
498 Ga0316586_1000924
499 Ga0316586_1001138
500 Ga0316588_1005793
501 Ga0316588_1030105
502 Ga0316587_1009336
503 Ga0316587_1021928
504 Ga0316596_1000837
505 Ga0316596_1001536
506 Ga0316596_1032093
507 Ga0316596_1036517
508 Ga0316596_1052175
509 Ga0316596_1055856
510 Ga0316596_1060934
511 Ga0373952_0041391
512 Ga0316574_0009903
513 Ga0316574_0018270
514 Ga0316574_0025231
515 Ga0316574_0031703
516 Ga0316574_0035016
517 Ga0316574_0241604
518 Ga0316574_0309222
519 Ga0316574_0667570
520 Ga0373937_0313618
521 Ga0316582_0004702
522 Ga0316582_0026471
523 Ga0316582_0052485
524 Ga0316582_0068469
525 Ga0316582_0109973
526 Ga0316582_0165372
527 Ga0316582_0280587
528 Ga0316582_0320180
529 Ga0316584_0016102
530 Ga0316584_0042161
531 Ga0316584_0149180
532 Ga0316584_0554131
533 Ga0316584_0593677
534 Ga0316581_0000636
535 Ga0316581_0001198
536 Ga0316581_0023156
537 Ga0316581_0057571
538 Ga0395901_0326528
539 Ga0400483_037366
540 Ga0400489_93069
541 Ga0436362_0622689
542 Ga0451795_1524593
543 Ga0451807_0767026
544 Ga0451852_21957
545 Ga0439464_0021109
546 Ga0451577_0223629
547 Ga0451577_0233552
548 Ga0451577_0979391
549 Ga0466965_0040104
550 Ga0466966_0001728
551 Ga0466961_0010105
552 Ga0466963_0191518
553 Ga0453684_0094988
554 Ga0453684_0303366
555 Ga0453684_0730943
556 Ga0466957_0008774
557 Ga0466959_0009511
558 Ga0451576_0065597
559 Ga0451576_0109872
560 Ga0451576_0132198
561 Ga0466958_0004728
562 Ga0495638_0289014
563 Ga0495582_0418767
564 Ga0495639_0022999
565 Ga0495596_0193605
566 Ga0495616_0001840
567 Ga0495640_0387064
568 Ga0495625_0082485
569 Ga0495661_0131935
570 Ga0495588_0042139
571 Ga0495624_0226275
572 Ga0495581_0065838
573 Ga0495672_0157341
574 Ga0495686_0180484
575 Ga0496100_0811300
576 Ga0496122_0009054
577 Ga0496126_0071651
578 Ga0501037_0004790
579 Ga0501037_0020467
580 Ga0501038_0025940
581 Ga0501039_0308903
582 Ga0501046_0016233
583 Ga0501068_0708283
584 Ga0501070_0017046
585 Ga0501070_0094095
586 Ga0501072_0163184
587 Ga0501073_0205005
588 Ga0501073_0566898
589 Ga0501074_0001860
590 Ga0501075_0112722
591 Ga0501080_0001101
592 Ga0501083_0061227
593 Ga0501083_0064123
594 nmdc:mga05p37_1058312_c1
595 nmdc:mga09592_38165_c1
596 nmdc:mga0qj67_273947_c1
597 nmdc:mga0qj67_84451_c1
598 nmdc:mga06r32_570030_c1
599 nmdc:mga08y16_24361_c1
600 nmdc:mga08y16_97009_c1
601 nmdc:mga0n895_106240_c1
602 nmdc:mga0n895_1090436_c1
603 nmdc:mga0n895_181233_c1
604 nmdc:mga0n895_533650_c1
605 nmdc:mga0rr50_113142_c1
606 nmdc:mga0rr50_63416_c1
607 nmdc:mga08x19_341201_c1
608 nmdc:mga0a205_211773_c1
609 Ga0500638_061454
610 Ga0500611_015506
611 Ga0500645_000007
612 Ga0500661_007189
613 2600444429
614 2602011514
615 2823423969
616 2883294300
617 2883357176
618 2919503183
619 2926066246
620 3001269177

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00574

CLP_protease

Clp protease

51

232

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
6mx2-assembly5.cif.gz_E crystal structure of clpp1 from clostridium difficile 630. 0.9977 23 199
1tg6-assembly2.cif.gz_G-2 crystallography and mutagenesis point to an essential role for the n-terminus of human mitochondrial clpp 0.9973 23 195
8r04-assembly1.cif.gz_A structure of staphylococcus aureus clpp bound to the covalent active site inhibitor cystargolide a 0.997 23 197
5g1s-assembly1.cif.gz_P open conformation of francisella tularensis clpp at 1.7 a 0.9961 24 198
8ef8-assembly1.cif.gz_N staphylococcus aureus clpp y63w in complex with compound 3471 0.9959 23 197
ID Description Score Start End Superfamily
1yg8S00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9916 24 199 3.90.226.10
af_Q2PMR0_6_196_3.90.226.10 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9772 10 197 3.90.226.10
1yg8S00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9697 24 199 3.90.226.10
1y7oA00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9647 9 197 3.90.226.10
1y7oA00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9588 9 197 3.90.226.10
ID Description Score Start End GO Terms
AF-G1C6I0-F1-model_v4 ATP-dependent Clp protease proteolytic subunit 1 28 106 GO:0004176
GO:0004252
GO:0006515
GO:0009368
GO:0009507
GO:0051117
AF-X1NLV9-F1-model_v4 endopeptidase Clp (EC 3.4.21.92) 0.9998 23 198 GO:0004176
GO:0004252
GO:0006515
GO:0009368
GO:0051117
AF-A0A7W5YN81-F1-model_v4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) 0.9988 25 197 GO:0004176
GO:0004252
GO:0005737
GO:0006515
GO:0009368
GO:0051117
AF-A0A161LNH2-F1-model_v4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) 0.9986 25 197 GO:0004176
GO:0004252
GO:0005737
GO:0006515
GO:0009368
GO:0051117
AF-A0A544YKD1-F1-model_v4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) 0.9984 24 198 GO:0004176
GO:0004252
GO:0005737
GO:0006515
GO:0009368
GO:0051117

Map