F367399

General Info

Members Datasets Scaffolds Average Seq Length
257 180 255 298

Family's Representative Sequence

Representative Sequence 3300031250|Ga0265331_10005295|Ga0265331_100052953
Length 320
Sequence MTDGARNHSTLNFEQWAQQVQQATENALAQTLPAAHLPPERLHQAMRYAVLGGGKRVRALLAHAAGELCGADPAKVTRAASAVELIHAYSLVHDDMPCMDDDDLRRGKPSCHKEFDEATALLVGDALQSLAFDVLTTPGLHSNPNQQLQMTHLLAQASGSRGMAGGQAIDLDSVGLALTQEQLEFMHLRKTGALIRAAVLLGAWCSDKHTHADADNSALFATPVFTALDHYAKHIGLAFQVIDDILDSEADTATLGKTSGKDKEANKPTYVTILGVTRARAMAAELHANAVKPLAGLDNAGLNNSTRLLQIADYIMHRAY

Samples

Sample ID Description Type Environment
1 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
2 2891633521 Azoarcus rhizosphaerae CC-YHH848 Isolate Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
48 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
74 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
79 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
80 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
88 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
89 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
90 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
91 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
96 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
97 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
98 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
99 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
100 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
105 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
106 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
107 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
108 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
114 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
115 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
116 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
117 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
118 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
119 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
120 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
121 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
122 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
123 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
124 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
125 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
126 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
127 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
128 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
129 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
130 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
131 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
132 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
133 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
134 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
135 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
136 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
137 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
138 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
139 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
140 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
141 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
142 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
143 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
144 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
145 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
155 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
156 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
157 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
158 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
159 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
160 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
161 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
162 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
165 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
167 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
168 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
169 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
170 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
171 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
172 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
173 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
174 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
175 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
176 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
177 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
178 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
179 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
180 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.22
Metatranscriptomes 0
Isolates 0.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.39
Nodule 0
Rhizoplane 0.78
Rhizosphere 95.72
Stem 0
Stem Tuber 0
Unclassified 3.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10000213 3300003322 Bacteria 7475
2 Ga0068869_100157610 3300005334 Bacteria 1765
3 Ga0070680_100248944 3300005336 Bacteria 1502
4 Ga0070682_100168658 3300005337 Bacteria 1519
5 Ga0070689_100120637 3300005340 Bacteria 2094
6 Ga0070689_100245170 3300005340 Bacteria 1477
7 Ga0070692_10082722 3300005345 Bacteria 1731
8 Ga0070674_100003583 3300005356 Bacteria 8730
9 Ga0070674_100166957 3300005356 Bacteria 1675
10 Ga0070667_100014815 3300005367 Bacteria 6441
11 Ga0070667_100046254 3300005367 Bacteria 3660
12 Ga0070714_100001491 3300005435 Bacteria 17032
13 Ga0070713_100224876 3300005436 Bacteria 1704
14 Ga0070705_100049728 3300005440 Bacteria 2436
15 Ga0070694_100063497 3300005444 Bacteria 2525
16 Ga0070678_100005691 3300005456 Bacteria 7240
17 Ga0070681_10028623 3300005458 Bacteria 5603
18 Ga0070681_10302902 3300005458 Bacteria 1508
19 Ga0070706_100514963 3300005467 Bacteria 1113
20 Ga0070698_100024331 3300005471 Bacteria 6319
21 Ga0070698_100204132 3300005471 Bacteria 1912
22 Ga0070679_100007711 3300005530 Bacteria 10076
23 Ga0068853_100082374 3300005539 Bacteria 2818
24 Ga0070672_100009031 3300005543 Bacteria 6853
25 Ga0070686_100418526 3300005544 Bacteria 1023
26 Ga0070696_100147975 3300005546 Bacteria 1721
27 Ga0070704_100010535 3300005549 Bacteria 5628
28 Ga0070704_100036235 3300005549 Bacteria 3360
29 Ga0070704_100219006 3300005549 Bacteria 1547
30 Ga0068855_100002213 3300005563 Bacteria 24061
31 Ga0068855_100159617 3300005563 Bacteria 2560
32 Ga0068857_100064202 3300005577 Bacteria 3265
33 Ga0068856_100010468 3300005614 Bacteria 9003
34 Ga0068859_100043018 3300005617 Bacteria 4539
35 Ga0068864_100177419 3300005618 Bacteria 1946
36 Ga0068863_100492783 3300005841 Bacteria 1206
37 Ga0068858_100011298 3300005842 Bacteria 8438
38 Ga0068858_100012920 3300005842 Bacteria 7874
39 Ga0075428_100005087 3300006844 Bacteria 14613
40 Ga0075428_100045170 3300006844 Bacteria 4841
41 Ga0075428_100102522 3300006844 Bacteria 3120
42 Ga0075431_100052358 3300006847 Bacteria 4209
43 Ga0075431_100055494 3300006847 Bacteria 4086
44 Ga0075431_100383444 3300006847 Bacteria 1409
45 Ga0075434_100000391 3300006871 Bacteria 32055
46 Ga0075434_100096365 3300006871 Bacteria 2963
47 Ga0075429_100000146 3300006880 Bacteria 43486
48 Ga0075429_100115490 3300006880 Bacteria 2346
49 Ga0075436_100010289 3300006914 Bacteria 6404
50 Ga0075436_100140279 3300006914 Bacteria 1698
51 Ga0097620_100043018 3300006931 Bacteria 4539
52 Ga0075435_100006842 3300007076 Bacteria 8090
53 Ga0099794_10011465 3300007265 Bacteria 3795
54 Ga0105240_10134052 3300009093 Bacteria 2967
55 Ga0105240_10278617 3300009093 Bacteria 1922
56 Ga0111539_10077596 3300009094 Bacteria 3909
57 Ga0111539_10126905 3300009094 Bacteria 2988
58 Ga0114129_10025782 3300009147 Bacteria 8326
59 Ga0105237_10005287 3300009545 Bacteria 14596
60 Ga0105238_10057523 3300009551 Bacteria 3898
61 Ga0105238_10419145 3300009551 Bacteria 1333
62 Ga0157370_10001810 3300013104 Bacteria 26364
63 Ga0157379_10004023 3300014968 Bacteria 12525
64 Ga0157379_10085316 3300014968 Bacteria 2830
65 Ga0213872_10001035 3300021361 Bacteria 19388
66 Ga0213872_10044741 3300021361 Bacteria 2014
67 Ga0207699_10079074 3300025906 Bacteria 2033
68 Ga0207707_10005003 3300025912 Bacteria 11646
69 Ga0207707_10016999 3300025912 Bacteria 6337
70 Ga0207707_10040581 3300025912 Bacteria 4065
71 Ga0207671_10005946 3300025914 Bacteria 11058
72 Ga0207660_10434768 3300025917 Bacteria 1060
73 Ga0207662_10155715 3300025918 Bacteria 1456
74 Ga0207652_10014728 3300025921 Bacteria 6338
75 Ga0207694_10088452 3300025924 Bacteria 2442
76 Ga0207694_10283925 3300025924 Bacteria 1360
77 Ga0207670_10220469 3300025936 Bacteria 1451
78 Ga0207691_10105746 3300025940 Bacteria 2507
79 Ga0207689_10134976 3300025942 Bacteria 2032
80 Ga0207689_10305735 3300025942 Bacteria 1318
81 Ga0207667_10110627 3300025949 Bacteria 2834
82 Ga0207667_10214048 3300025949 Bacteria 1975
83 Ga0207658_10016988 3300025986 Bacteria 5009
84 Ga0207658_10294775 3300025986 Bacteria 1395
85 Ga0207677_10015406 3300026023 Bacteria 4496
86 Ga0207703_10009069 3300026035 Bacteria 7832
87 Ga0207703_10053686 3300026035 Bacteria 3276
88 Ga0207639_10058922 3300026041 Bacteria 2956
89 Ga0207708_10351874 3300026075 Bacteria 1209
90 Ga0207702_10060439 3300026078 Bacteria 3231
91 Ga0207674_10061376 3300026116 Bacteria 3798
92 Ga0207675_100334096 3300026118 Bacteria 1482
93 Ga0207683_10003105 3300026121 Bacteria 14515
94 Ga0210000_1001630 3300027462 Bacteria 3170
95 Ga0209966_1005075 3300027695 Bacteria 2249
96 Ga0209974_10037260 3300027876 Bacteria 1614
97 Ga0207428_10073296 3300027907 Bacteria 2687
98 Ga0268266_10511271 3300028379 Bacteria 1147
99 Ga0265328_10000001 3300031239 Bacteria 371500
100 Ga0265331_10005295 3300031250 Bacteria 7806
101 Ga0265331_10009679 3300031250 Bacteria 5395
102 Ga0265327_10053614 3300031251 Bacteria 2091
103 Ga0265316_10198086 3300031344 Bacteria 1490
104 Ga0307408_100150093 3300031548 Bacteria 1839
105 Ga0316579_10006333 3300031691 Bacteria 4827
106 Ga0265314_10036837 3300031711 Bacteria 3550
107 Ga0316578_10030558 3300031728 Bacteria 3063
108 Ga0307516_10177049 3300031730 Bacteria 1869
109 Ga0316577_10032030 3300031733 Bacteria 2937
110 Ga0307413_10286471 3300031824 Bacteria 1242
111 Ga0307407_10120112 3300031903 Bacteria 1665
112 Ga0307409_100172992 3300031995 Bacteria 1903
113 Ga0307409_100173444 3300031995 Bacteria 1901
114 Ga0307416_100106468 3300032002 Bacteria 2458
115 Ga0307416_100125449 3300032002 Bacteria 2299
116 Ga0307416_100261418 3300032002 Bacteria 1692
117 Ga0307411_10093981 3300032005 Bacteria 2101
118 Ga0307411_10132907 3300032005 Bacteria 1822
119 Ga0316583_10001902 3300032133 Bacteria 7126
120 Ga0316583_10004905 3300032133 Bacteria 4783
121 Ga0373955_0012256 3300035172 Bacteria 4117
122 Ga0316574_0020330 3300035398 Bacteria 3929
123 Ga0316574_0068019 3300035398 Bacteria 2246
124 Ga0316574_0080755 3300035398 Bacteria 2064
125 Ga0316574_0092189 3300035398 Bacteria 1933
126 Ga0316574_0122366 3300035398 Bacteria 1671
127 Ga0373933_0023878 3300035724 Bacteria 3497
128 Ga0373937_0001546 3300036401 Bacteria 19330
129 Ga0373937_0015503 3300036401 Bacteria 6741
130 Ga0373937_0056573 3300036401 Bacteria 3602
131 Ga0316582_0130532 3300036647 Bacteria 1687
132 Ga0316582_0131011 3300036647 Bacteria 1684
133 Ga0316584_0007913 3300036712 Bacteria 7294
134 Ga0316584_0024563 3300036712 Bacteria 4412
135 Ga0316584_0070066 3300036712 Bacteria 2629
136 Ga0316584_0144589 3300036712 Bacteria 1772
137 Ga0400488_03416 3300038741 Bacteria 1829
138 Ga0400483_071837 3300039062 Bacteria 3227
139 Ga0436361_0227769 3300039447 Bacteria 4903
140 Ga0436361_0615981 3300039447 Bacteria 11913
141 Ga0436363_1077770 3300039450 Bacteria 12294
142 Ga0439456_017392 3300042013 Bacteria 1508
143 Ga0450923_016419 3300042125 Bacteria 1395
144 Ga0451577_0029185 3300042876 Bacteria 4985
145 Ga0451577_0134606 3300042876 Bacteria 2218
146 Ga0451577_0320113 3300042876 Bacteria 1406
147 Ga0466969_0003364 3300044656 Bacteria 8517
148 Ga0466966_0000737 3300044684 Bacteria 20811
149 Ga0466961_0003147 3300044693 Bacteria 10279
150 Ga0466964_0000177 3300044706 Bacteria 17558
151 Ga0453684_0000419 3300044712 Bacteria 173463
152 Ga0453684_0207175 3300044712 Bacteria 2282
153 Ga0466971_0003904 3300044719 Bacteria 6392
154 Ga0466968_0032215 3300044735 Bacteria 2179
155 Ga0466970_0002612 3300044765 Bacteria 8685
156 Ga0466957_0002476 3300044842 Bacteria 9917
157 Ga0466959_0006256 3300045049 Bacteria 8225
158 Ga0451576_0011665 3300045051 Bacteria 9956
159 Ga0451576_0019755 3300045051 Bacteria 7353
160 Ga0451576_0441000 3300045051 Bacteria 1366
161 Ga0495592_0001317 3300046454 Bacteria 17228
162 Ga0495629_0239617 3300046459 Bacteria 1249
163 Ga0495653_0052994 3300046463 Bacteria 3106
164 Ga0495662_0004099 3300046476 Bacteria 7340
165 Ga0495664_0111540 3300046477 Bacteria 1651
166 Ga0495608_0109237 3300046511 Bacteria 1778
167 Ga0495618_0013251 3300046514 Bacteria 5018
168 Ga0495628_0007453 3300046516 Bacteria 9467
169 Ga0495666_0009241 3300046526 Bacteria 4929
170 Ga0495652_0190109 3300046529 Bacteria 1567
171 Ga0495640_0001766 3300046533 Bacteria 17140
172 Ga0495640_0072689 3300046533 Bacteria 2304
173 Ga0495586_0003549 3300046535 Bacteria 8359
174 Ga0495587_0104398 3300046536 Bacteria 1631
175 Ga0495598_0028858 3300046537 Bacteria 1542
176 Ga0495645_0020230 3300046543 Bacteria 4800
177 Ga0495667_0005669 3300046559 Bacteria 8450
178 Ga0495634_0011187 3300046642 Bacteria 6543
179 Ga0495588_0159014 3300046674 Bacteria 1195
180 Ga0495599_0018117 3300046678 Bacteria 4384
181 Ga0495613_0093291 3300046689 Bacteria 2179
182 Ga0495624_0043823 3300046690 Bacteria 2853
183 Ga0495600_0017376 3300046809 Bacteria 4576
184 Ga0495581_0097531 3300047315 Bacteria 1707
185 Ga0495604_0028797 3300047317 Bacteria 4420
186 Ga0495604_0178846 3300047317 Bacteria 1485
187 Ga0495636_0002398 3300047318 Bacteria 7194
188 Ga0495674_0082369 3300047319 Bacteria 2759
189 Ga0495680_0004156 3300047322 Bacteria 13915
190 Ga0495680_0217879 3300047322 Bacteria 1364
191 Ga0495675_0125254 3300047444 Bacteria 1599
192 Ga0496106_0090909 3300048909 Bacteria 2356
193 Ga0496113_0147396 3300048916 Bacteria 1855
194 Ga0496121_0321349 3300048924 Bacteria 1042
195 Ga0496126_0037486 3300048929 Bacteria 4523
196 Ga0501032_0002403 3300049569 Bacteria 14597
197 Ga0501032_0018241 3300049569 Bacteria 4919
198 Ga0501033_0020802 3300049570 Bacteria 4955
199 Ga0501034_0050689 3300049571 Bacteria 4186
200 Ga0501034_0516534 3300049571 Bacteria 1107
201 Ga0501036_0373645 3300049572 Bacteria 1190
202 Ga0501036_0375406 3300049572 Bacteria 1187
203 Ga0501038_0000660 3300049574 Bacteria 30647
204 Ga0501038_0006558 3300049574 Bacteria 10764
205 Ga0501038_0346885 3300049574 Bacteria 1157
206 Ga0501039_0214515 3300049575 Bacteria 1513
207 Ga0501040_0191822 3300049576 Bacteria 1450
208 Ga0501043_0043452 3300049579 Bacteria 3532
209 Ga0501047_0004647 3300049581 Bacteria 12916
210 Ga0501067_0063746 3300049583 Bacteria 2041
211 Ga0501069_0038280 3300049585 Bacteria 2647
212 Ga0501070_0001247 3300049586 Bacteria 22828
213 Ga0501073_0000169 3300049589 Bacteria 42534
214 Ga0501074_0000180 3300049590 Bacteria 34249
215 Ga0501074_0156910 3300049590 Bacteria 1625
216 Ga0501077_0091738 3300049593 Bacteria 1925
217 Ga0501209_007249 3300049656 Bacteria 2117
218 Ga0501079_0010110 3300049741 Bacteria 7163
219 Ga0501079_0087899 3300049741 Bacteria 2406
220 Ga0501080_0003503 3300049742 Bacteria 13821
221 Ga0501080_0051345 3300049742 Bacteria 3837
222 Ga0501080_0100683 3300049742 Bacteria 2681
223 Ga0501083_0000223 3300049744 Bacteria 36614
224 Ga0501269_011663 3300049766 Bacteria 1071
225 Ga0501035_0184509 3300049822 Bacteria 1796
226 Ga0501035_0318129 3300049822 Bacteria 1308
227 Ga0501044_0199461 3300049823 Bacteria 1960
228 Ga0501044_0561429 3300049823 Bacteria 1038
229 nmdc:mga05p37_183009_c1 3300050507 Bacteria 2548
230 nmdc:mga05p37_588_c1 3300050507 Bacteria 40012
231 nmdc:mga09592_116_c1 3300050508 Bacteria 50381
232 nmdc:mga06r32_39014_c1 3300050510 Bacteria 4504
233 nmdc:mga06r32_57165_c1 3300050510 Bacteria 3747
234 nmdc:mga06r32_96925_c1 3300050510 Bacteria 2889
235 nmdc:mga08y16_141511_c1 3300050511 Bacteria 2501
236 nmdc:mga08y16_75494_c1 3300050511 Bacteria 3514
237 nmdc:mga0n895_23342_c1 3300050512 Bacteria 5813
238 nmdc:mga0n895_2992_c1 3300050512 Bacteria 13414
239 nmdc:mga0n895_80913_c1 3300050512 Bacteria 3237
240 nmdc:mga0rr50_111810_c1 3300050513 Bacteria 2162
241 nmdc:mga0rr50_16025_c1 3300050513 Bacteria 4965
242 nmdc:mga08x19_75328_c1 3300050514 Bacteria 2206
243 nmdc:mga0a205_11599_c1 3300050515 Bacteria 8120
244 nmdc:mga0a205_201984_c1 3300050515 Bacteria 1878
245 nmdc:mga0a205_245227_c1 3300050515 Bacteria 1672
246 nmdc:mga0a205_465449_c1 3300050515 Bacteria 1123
247 Ga0495601_0050343 3300053077 Bacteria 2627
248 Ga0495601_0156919 3300053077 Bacteria 1486
249 Ga0495612_0058147 3300053078 Bacteria 1598
250 Ga0500622_0000011 3300053156 Bacteria 386096
251 Ga0501084_0170959 3300054114 Bacteria 1834
252 Ga0501084_0257166 3300054114 Bacteria 1474
253 Ga0501082_0143449 3300060353 Bacteria 2073
254 Ga0501082_0554315 3300060353 Bacteria 1005
255 Ga0466962_0000219 3300061719 Bacteria 23738

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050515 nmdc:mga0a205_201984_c1 nmdc:mga0a205_201984_c1_1084_1860 258
2 3300035724 Ga0373933_0023878 Ga0373933_0023878_17_799 260
3 3300036647 Ga0316582_0130532 Ga0316582_0130532_865_1650 260
4 3300036647 Ga0316582_0131011 Ga0316582_0131011_821_1603 260
5 3300039450 Ga0436363_1077770 Ga0436363_1077770_4257_5042 260
6 3300049569 Ga0501032_0018241 Ga0501032_0018241_4094_4876 260
7 3300049572 Ga0501036_0375406 Ga0501036_0375406_20_802 260
8 3300025924 Ga0207694_10283925 Ga0207694_102839251 266
9 3300005614 Ga0068856_100010468 Ga0068856_1000104682 272
10 3300026078 Ga0207702_10060439 Ga0207702_100604394 272
11 3300009551 Ga0105238_10419145 Ga0105238_104191451 277
12 3300053156 Ga0500622_0000011 Ga0500622_0000011_339694_340590 278
13 3300049581 Ga0501047_0004647 Ga0501047_0004647_5560_6459 280
14 3300049583 Ga0501067_0063746 Ga0501067_0063746_662_1561 280
15 3300049585 Ga0501069_0038280 Ga0501069_0038280_464_1363 280
16 3300049586 Ga0501070_0001247 Ga0501070_0001247_18925_19824 280
17 3300049589 Ga0501073_0000169 Ga0501073_0000169_37759_38658 280
18 3300049590 Ga0501074_0000180 Ga0501074_0000180_7502_8401 280
19 3300049741 Ga0501079_0010110 Ga0501079_0010110_1220_2119 280
20 3300049742 Ga0501080_0003503 Ga0501080_0003503_3670_4569 280
21 3300049744 Ga0501083_0000223 Ga0501083_0000223_24968_25867 280
22 3300049823 Ga0501044_0199461 Ga0501044_0199461_664_1563 280
23 3300054114 Ga0501084_0170959 Ga0501084_0170959_82_981 280
24 3300044712 Ga0453684_0000419 Ga0453684_0000419_12209_13054 281
25 3300048916 Ga0496113_0147396 Ga0496113_0147396_990_1838 281
26 3300005444 Ga0070694_100063497 Ga0070694_1000634972 282
27 3300027695 Ga0209966_1005075 Ga0209966_10050752 282
28 3300035398 Ga0316574_0080755 Ga0316574_0080755_1140_1991 282
29 3300042876 Ga0451577_0029185 Ga0451577_0029185_3681_4565 282
30 3300032133 Ga0316583_10001902 Ga0316583_100019023 287
31 3300027907 Ga0207428_10073296 Ga0207428_100732964 288
32 3300042876 Ga0451577_0134606 Ga0451577_0134606_1042_1908 288
33 3300048929 Ga0496126_0037486 Ga0496126_0037486_3087_3953 288
34 3300049822 Ga0501035_0318129 Ga0501035_0318129_365_1258 288
35 3300049823 Ga0501044_0561429 Ga0501044_0561429_14_907 288
36 3300050511 nmdc:mga08y16_75494_c1 nmdc:mga08y16_75494_c1_2216_3082 288
37 3300006914 Ga0075436_100140279 Ga0075436_1001402791 289
38 3300007265 Ga0099794_10011465 Ga0099794_100114655 289
39 3300035172 Ga0373955_0012256 Ga0373955_0012256_222_1091 289
40 3300035398 Ga0316574_0020330 Ga0316574_0020330_148_1035 289
41 3300036401 Ga0373937_0056573 Ga0373937_0056573_1604_2473 289
42 3300046477 Ga0495664_0111540 Ga0495664_0111540_468_1337 289
43 3300050512 nmdc:mga0n895_23342_c1 nmdc:mga0n895_23342_c1_4106_4975 289
44 3300050515 nmdc:mga0a205_11599_c1 nmdc:mga0a205_11599_c1_780_1649 289
45 3300007076 Ga0075435_100006842 Ga0075435_1000068423 290
46 3300048924 Ga0496121_0321349 Ga0496121_0321349_112_1011 290
47 3300050513 nmdc:mga0rr50_16025_c1 nmdc:mga0rr50_16025_c1_883_1785 290
48 3300050515 nmdc:mga0a205_245227_c1 nmdc:mga0a205_245227_c1_204_1106 290
49 3300005367 Ga0070667_100046254 Ga0070667_1000462541 291
50 3300005842 Ga0068858_100012920 Ga0068858_1000129207 291
51 3300014968 Ga0157379_10004023 Ga0157379_100040234 291
52 3300025986 Ga0207658_10294775 Ga0207658_102947752 291
53 3300026023 Ga0207677_10015406 Ga0207677_100154064 291
54 3300026035 Ga0207703_10009069 Ga0207703_100090692 291
55 3300026118 Ga0207675_100334096 Ga0207675_1003340962 291
56 3300046674 Ga0495588_0159014 Ga0495588_0159014_55_933 291
57 3300005356 Ga0070674_100003583 Ga0070674_1000035837 293
58 3300005367 Ga0070667_100014815 Ga0070667_1000148153 293
59 3300005456 Ga0070678_100005691 Ga0070678_1000056914 293
60 3300005543 Ga0070672_100009031 Ga0070672_1000090312 293
61 3300025940 Ga0207691_10105746 Ga0207691_101057462 293
62 3300025986 Ga0207658_10016988 Ga0207658_100169882 293
63 3300026121 Ga0207683_10003105 Ga0207683_1000310510 293
64 3300028379 Ga0268266_10511271 Ga0268266_105112711 293
65 3300031250 Ga0265331_10009679 Ga0265331_100096792 293
66 3300039062 Ga0400483_071837 Ga0400483_071837_611_1495 293
67 3300042876 Ga0451577_0320113 Ga0451577_0320113_473_1357 293
68 3300044712 Ga0453684_0207175 Ga0453684_0207175_769_1653 293
69 3300045051 Ga0451576_0011665 Ga0451576_0011665_6024_6908 293
70 3300005336 Ga0070680_100248944 Ga0070680_1002489442 294
71 3300005458 Ga0070681_10028623 Ga0070681_100286232 294
72 3300005530 Ga0070679_100007711 Ga0070679_1000077115 294
73 3300009093 Ga0105240_10134052 Ga0105240_101340522 294
74 3300025912 Ga0207707_10016999 Ga0207707_100169992 294
75 3300025921 Ga0207652_10014728 Ga0207652_100147285 294
76 3300035398 Ga0316574_0092189 Ga0316574_0092189_243_1142 294
77 3300035398 Ga0316574_0122366 Ga0316574_0122366_444_1334 294
78 3300036712 Ga0316584_0024563 Ga0316584_0024563_586_1488 294
79 3300036712 Ga0316584_0070066 Ga0316584_0070066_191_1078 294
80 3300036712 Ga0316584_0144589 Ga0316584_0144589_853_1752 294
81 3300049766 Ga0501269_011663 Ga0501269_011663_32_955 294
82 3300050513 nmdc:mga0rr50_111810_c1 nmdc:mga0rr50_111810_c1_547_1437 294
83 3300053078 Ga0495612_0058147 Ga0495612_0058147_109_1008 294
84 iso_pu_bacteria 2574179768 2574431960 294
85 iso_pu_bacteria 2891633521 2891636053 294
86 3300031548 Ga0307408_100150093 Ga0307408_1001500933 295
87 3300031730 Ga0307516_10177049 Ga0307516_101770492 295
88 3300031903 Ga0307407_10120112 Ga0307407_101201123 295
89 3300031995 Ga0307409_100172992 Ga0307409_1001729922 295
90 3300032002 Ga0307416_100106468 Ga0307416_1001064682 295
91 3300032005 Ga0307411_10093981 Ga0307411_100939813 295
92 3300006871 Ga0075434_100000391 Ga0075434_10000039124 296
93 3300006914 Ga0075436_100010289 Ga0075436_1000102896 296
94 3300032002 Ga0307416_100261418 Ga0307416_1002614182 296
95 3300049574 Ga0501038_0000660 Ga0501038_0000660_21554_22444 296
96 3300050512 nmdc:mga0n895_2992_c1 nmdc:mga0n895_2992_c1_10148_11038 296
97 3300050514 nmdc:mga08x19_75328_c1 nmdc:mga08x19_75328_c1_1117_2007 296
98 3300006844 Ga0075428_100102522 Ga0075428_1001025222 297
99 3300006847 Ga0075431_100383444 Ga0075431_1003834442 297
100 3300006880 Ga0075429_100115490 Ga0075429_1001154902 297
101 3300027462 Ga0210000_1001630 Ga0210000_10016302 297
102 3300031344 Ga0265316_10198086 Ga0265316_101980862 297
103 3300031711 Ga0265314_10036837 Ga0265314_100368375 297
104 3300042013 Ga0439456_017392 Ga0439456_017392_148_1047 297
105 3300042125 Ga0450923_016419 Ga0450923_016419_202_1095 297
106 3300048909 Ga0496106_0090909 Ga0496106_0090909_316_1218 297
107 3300049569 Ga0501032_0002403 Ga0501032_0002403_4007_4900 297
108 3300049571 Ga0501034_0050689 Ga0501034_0050689_3050_3943 297
109 3300049572 Ga0501036_0373645 Ga0501036_0373645_270_1163 297
110 3300049574 Ga0501038_0006558 Ga0501038_0006558_2400_3293 297
111 3300049575 Ga0501039_0214515 Ga0501039_0214515_378_1271 297
112 3300049656 Ga0501209_007249 Ga0501209_007249_228_1142 297
113 3300049822 Ga0501035_0184509 Ga0501035_0184509_377_1270 297
114 3300050507 nmdc:mga05p37_183009_c1 nmdc:mga05p37_183009_c1_236_1135 297
115 3300050510 nmdc:mga06r32_96925_c1 nmdc:mga06r32_96925_c1_1905_2804 297
116 3300003322 rootL2_10000213 rootL2_100002136 298
117 3300005334 Ga0068869_100157610 Ga0068869_1001576102 298
118 3300005337 Ga0070682_100168658 Ga0070682_1001686582 298
119 3300005340 Ga0070689_100120637 Ga0070689_1001206373 298
120 3300005340 Ga0070689_100245170 Ga0070689_1002451702 298
121 3300005345 Ga0070692_10082722 Ga0070692_100827221 298
122 3300005356 Ga0070674_100166957 Ga0070674_1001669572 298
123 3300005435 Ga0070714_100001491 Ga0070714_10000149113 298
124 3300005436 Ga0070713_100224876 Ga0070713_1002248763 298
125 3300005440 Ga0070705_100049728 Ga0070705_1000497282 298
126 3300005458 Ga0070681_10302902 Ga0070681_103029022 298
127 3300005467 Ga0070706_100514963 Ga0070706_1005149631 298
128 3300005471 Ga0070698_100024331 Ga0070698_1000243316 298
129 3300005471 Ga0070698_100204132 Ga0070698_1002041322 298
130 3300005539 Ga0068853_100082374 Ga0068853_1000823742 298
131 3300005544 Ga0070686_100418526 Ga0070686_1004185261 298
132 3300005546 Ga0070696_100147975 Ga0070696_1001479752 298
133 3300005549 Ga0070704_100010535 Ga0070704_1000105352 298
134 3300005549 Ga0070704_100036235 Ga0070704_1000362352 298
135 3300005549 Ga0070704_100219006 Ga0070704_1002190062 298
136 3300005563 Ga0068855_100002213 Ga0068855_1000022138 298
137 3300005563 Ga0068855_100159617 Ga0068855_1001596173 298
138 3300005577 Ga0068857_100064202 Ga0068857_1000642022 298
139 3300005617 Ga0068859_100043018 Ga0068859_1000430183 298
140 3300005618 Ga0068864_100177419 Ga0068864_1001774192 298
141 3300005841 Ga0068863_100492783 Ga0068863_1004927832 298
142 3300005842 Ga0068858_100011298 Ga0068858_1000112984 298
143 3300006844 Ga0075428_100005087 Ga0075428_1000050874 298
144 3300006844 Ga0075428_100045170 Ga0075428_1000451702 298
145 3300006847 Ga0075431_100052358 Ga0075431_1000523582 298
146 3300006847 Ga0075431_100055494 Ga0075431_1000554943 298
147 3300006871 Ga0075434_100096365 Ga0075434_1000963652 298
148 3300006880 Ga0075429_100000146 Ga0075429_10000014624 298
149 3300006931 Ga0097620_100043018 Ga0097620_1000430183 298
150 3300009093 Ga0105240_10278617 Ga0105240_102786173 298
151 3300009094 Ga0111539_10077596 Ga0111539_100775965 298
152 3300009094 Ga0111539_10126905 Ga0111539_101269052 298
153 3300009147 Ga0114129_10025782 Ga0114129_100257822 298
154 3300009545 Ga0105237_10005287 Ga0105237_1000528710 298
155 3300009551 Ga0105238_10057523 Ga0105238_100575234 298
156 3300013104 Ga0157370_10001810 Ga0157370_1000181017 298
157 3300014968 Ga0157379_10085316 Ga0157379_100853163 298
158 3300021361 Ga0213872_10001035 Ga0213872_1000103513 298
159 3300021361 Ga0213872_10044741 Ga0213872_100447412 298
160 3300025906 Ga0207699_10079074 Ga0207699_100790742 298
161 3300025912 Ga0207707_10005003 Ga0207707_1000500310 298
162 3300025912 Ga0207707_10040581 Ga0207707_100405812 298
163 3300025914 Ga0207671_10005946 Ga0207671_100059469 298
164 3300025917 Ga0207660_10434768 Ga0207660_104347681 298
165 3300025918 Ga0207662_10155715 Ga0207662_101557152 298
166 3300025924 Ga0207694_10088452 Ga0207694_100884523 298
167 3300025936 Ga0207670_10220469 Ga0207670_102204692 298
168 3300025942 Ga0207689_10134976 Ga0207689_101349762 298
169 3300025942 Ga0207689_10305735 Ga0207689_103057352 298
170 3300025949 Ga0207667_10110627 Ga0207667_101106271 298
171 3300025949 Ga0207667_10214048 Ga0207667_102140482 298
172 3300026035 Ga0207703_10053686 Ga0207703_100536862 298
173 3300026041 Ga0207639_10058922 Ga0207639_100589222 298
174 3300026075 Ga0207708_10351874 Ga0207708_103518742 298
175 3300026116 Ga0207674_10061376 Ga0207674_100613763 298
176 3300027876 Ga0209974_10037260 Ga0209974_100372602 298
177 3300031239 Ga0265328_10000001 Ga0265328_10000001232 298
178 3300031250 Ga0265331_10005295 Ga0265331_100052953 298
179 3300031251 Ga0265327_10053614 Ga0265327_100536142 298
180 3300031691 Ga0316579_10006333 Ga0316579_100063334 298
181 3300031728 Ga0316578_10030558 Ga0316578_100305582 298
182 3300031733 Ga0316577_10032030 Ga0316577_100320302 298
183 3300031824 Ga0307413_10286471 Ga0307413_102864712 298
184 3300031995 Ga0307409_100173444 Ga0307409_1001734442 298
185 3300032002 Ga0307416_100125449 Ga0307416_1001254492 298
186 3300032005 Ga0307411_10132907 Ga0307411_101329072 298
187 3300032133 Ga0316583_10004905 Ga0316583_100049054 298
188 3300035398 Ga0316574_0068019 Ga0316574_0068019_34_966 298
189 3300036401 Ga0373937_0001546 Ga0373937_0001546_7222_8151 298
190 3300036401 Ga0373937_0015503 Ga0373937_0015503_1438_2340 298
191 3300036712 Ga0316584_0007913 Ga0316584_0007913_2101_3000 298
192 3300038741 Ga0400488_03416 Ga0400488_03416_387_1292 298
193 3300039447 Ga0436361_0227769 Ga0436361_0227769_1665_2567 298
194 3300039447 Ga0436361_0615981 Ga0436361_0615981_10190_11089 298
195 3300044656 Ga0466969_0003364 Ga0466969_0003364_7161_8096 298
196 3300044684 Ga0466966_0000737 Ga0466966_0000737_7161_8096 298
197 3300044693 Ga0466961_0003147 Ga0466961_0003147_2357_3292 298
198 3300044706 Ga0466964_0000177 Ga0466964_0000177_12367_13302 298
199 3300044719 Ga0466971_0003904 Ga0466971_0003904_3399_4334 298
200 3300044735 Ga0466968_0032215 Ga0466968_0032215_700_1635 298
201 3300044765 Ga0466970_0002612 Ga0466970_0002612_5332_6267 298
202 3300044842 Ga0466957_0002476 Ga0466957_0002476_1596_2531 298
203 3300045049 Ga0466959_0006256 Ga0466959_0006256_5332_6267 298
204 3300045051 Ga0451576_0019755 Ga0451576_0019755_5595_6524 298
205 3300045051 Ga0451576_0441000 Ga0451576_0441000_10_912 298
206 3300046454 Ga0495592_0001317 Ga0495592_0001317_824_1726 298
207 3300046459 Ga0495629_0239617 Ga0495629_0239617_71_973 298
208 3300046463 Ga0495653_0052994 Ga0495653_0052994_221_1123 298
209 3300046476 Ga0495662_0004099 Ga0495662_0004099_3826_4728 298
210 3300046511 Ga0495608_0109237 Ga0495608_0109237_537_1439 298
211 3300046514 Ga0495618_0013251 Ga0495618_0013251_821_1723 298
212 3300046516 Ga0495628_0007453 Ga0495628_0007453_2225_3127 298
213 3300046526 Ga0495666_0009241 Ga0495666_0009241_3657_4559 298
214 3300046529 Ga0495652_0190109 Ga0495652_0190109_348_1250 298
215 3300046533 Ga0495640_0001766 Ga0495640_0001766_518_1420 298
216 3300046533 Ga0495640_0072689 Ga0495640_0072689_963_1865 298
217 3300046535 Ga0495586_0003549 Ga0495586_0003549_5055_5957 298
218 3300046536 Ga0495587_0104398 Ga0495587_0104398_632_1534 298
219 3300046537 Ga0495598_0028858 Ga0495598_0028858_200_1132 298
220 3300046543 Ga0495645_0020230 Ga0495645_0020230_375_1277 298
221 3300046559 Ga0495667_0005669 Ga0495667_0005669_6271_7173 298
222 3300046642 Ga0495634_0011187 Ga0495634_0011187_5010_5912 298
223 3300046678 Ga0495599_0018117 Ga0495599_0018117_3323_4225 298
224 3300046689 Ga0495613_0093291 Ga0495613_0093291_831_1733 298
225 3300046690 Ga0495624_0043823 Ga0495624_0043823_824_1726 298
226 3300046809 Ga0495600_0017376 Ga0495600_0017376_1125_2027 298
227 3300047315 Ga0495581_0097531 Ga0495581_0097531_270_1172 298
228 3300047317 Ga0495604_0028797 Ga0495604_0028797_793_1695 298
229 3300047317 Ga0495604_0178846 Ga0495604_0178846_279_1208 298
230 3300047318 Ga0495636_0002398 Ga0495636_0002398_3339_4271 298
231 3300047319 Ga0495674_0082369 Ga0495674_0082369_946_1848 298
232 3300047322 Ga0495680_0004156 Ga0495680_0004156_6955_7857 298
233 3300047322 Ga0495680_0217879 Ga0495680_0217879_376_1305 298
234 3300047444 Ga0495675_0125254 Ga0495675_0125254_339_1268 298
235 3300049570 Ga0501033_0020802 Ga0501033_0020802_3853_4794 298
236 3300049571 Ga0501034_0516534 Ga0501034_0516534_190_1089 298
237 3300049574 Ga0501038_0346885 Ga0501038_0346885_112_1017 298
238 3300049576 Ga0501040_0191822 Ga0501040_0191822_506_1411 298
239 3300049579 Ga0501043_0043452 Ga0501043_0043452_495_1418 298
240 3300049590 Ga0501074_0156910 Ga0501074_0156910_100_1023 298
241 3300049593 Ga0501077_0091738 Ga0501077_0091738_39_947 298
242 3300049741 Ga0501079_0087899 Ga0501079_0087899_751_1653 298
243 3300049742 Ga0501080_0051345 Ga0501080_0051345_1337_2236 298
244 3300049742 Ga0501080_0100683 Ga0501080_0100683_1582_2481 298
245 3300050507 nmdc:mga05p37_588_c1 nmdc:mga05p37_588_c1_17595_18524 298
246 3300050508 nmdc:mga09592_116_c1 nmdc:mga09592_116_c1_19659_20588 298
247 3300050510 nmdc:mga06r32_39014_c1 nmdc:mga06r32_39014_c1_1346_2275 298
248 3300050510 nmdc:mga06r32_57165_c1 nmdc:mga06r32_57165_c1_1718_2647 298
249 3300050511 nmdc:mga08y16_141511_c1 nmdc:mga08y16_141511_c1_1372_2274 298
250 3300050512 nmdc:mga0n895_80913_c1 nmdc:mga0n895_80913_c1_2179_3081 298
251 3300050515 nmdc:mga0a205_465449_c1 nmdc:mga0a205_465449_c1_63_986 298
252 3300053077 Ga0495601_0050343 Ga0495601_0050343_1684_2586 298
253 3300053077 Ga0495601_0156919 Ga0495601_0156919_256_1158 298
254 3300054114 Ga0501084_0257166 Ga0501084_0257166_99_1007 298
255 3300060353 Ga0501082_0143449 Ga0501082_0143449_645_1550 298
256 3300060353 Ga0501082_0554315 Ga0501082_0554315_48_971 298
257 3300061719 Ga0466962_0000219 Ga0466962_0000219_11380_12315 298

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

39

296

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7lbj-assembly1.cif.gz_B crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.9732 3 298
7lbj-assembly1.cif.gz_A crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.9723 6 298
7lbj-assembly1.cif.gz_B crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.9697 3 298
3krf-assembly1.cif.gz_D mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium, ipp, and dmaspp (i) 0.9631 6 298
7lbj-assembly1.cif.gz_A crystal structure of octaprenyl diphosphate synthase from stenotrophomonas maltophilia 0.9587 6 298
ID Description Score Start End Superfamily
5aypA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9528 3 296 1.10.600.10
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9504 2 293 1.10.600.10
5aypA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9492 3 296 1.10.600.10
1rqjB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9439 6 298 1.10.600.10
4kkmB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9439 2 293 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A536WTU1-F1-model_v4 Geranyl transferase 0.9952 12 298 GO:0004659
GO:0005737
GO:0008299
AF-A0A522VVX7-F1-model_v4 Polyprenyl synthetase family protein 0.995 2 268 GO:0004659
GO:0005737
GO:0008299
AF-A0A2N2QRQ1-F1-model_v4 Geranyl transferase 0.9945 12 298 GO:0004659
GO:0005737
GO:0008299
AF-A0A521VJZ3-F1-model_v4 Polyprenyl synthetase family protein 0.9939 2 298 GO:0004659
GO:0005737
GO:0008299
AF-A0A4P5UEF9-F1-model_v4 (2E,6E)-farnesyl diphosphate synthase 0.9938 40 298 GO:0004659
GO:0005737
GO:0008299

Feature Viewer

pLDDT pTM Quality
94.04 0.93 High
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Predicted Structure (AlphaFold2)

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