F366996

General Info

Members Datasets Scaffolds Average Seq Length
257 183 243 405

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10297922|rootH1_102979222
Length 438
Sequence VLSGAEVSELVISAAFQREPATLRYHTVMKIYLVGGAVRDALLGMPVKERDWVVVGATPEQLLAQGYQAVGRDFPVFLHPETHEEYALARTERKTGAGYYGFATWFAPDVTLEQDLERRDLTINAIAEDEDSGEWIDPYGGRKDLEARLLRHVSAAFIEDPLRVLRVARFAARFASMGFMVAPETMNLLREMAGNGELDTLTPERVWRETQLALGTDSPHVYFQVLRDCGALKVVFPELDALFGVPQPERWHPEIDTGVHVLMVMQQAARLTPDPVTRFAALMHDLGKGTTPRDIWPRHIGHEARGVPLVKGLCERLRVPNDYRDLAVLVTAQHGKLHAVFEMRNDTLLEFLEKLDAYRRPERFKQFLLACEADARGRTGFEDRSYPNGQFLDEARAATAQIKPRVEEIQGLTGVQIAEQLRRQRIAALELLPRPERH

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
3 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
4 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
5 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
6 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
7 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
8 2865014394 Pantoea sp. R-71966 Isolate Unclassified
9 2895395659 Rhodanobacter sp. T12-5 Isolate Unclassified
10 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
11 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
12 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
13 2945951305 Pantoea agglomerans W2I1 Isolate Rhizosphere
14 2952252522 Salinicola sp. DM10 Isolate Unclassified
15 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
23 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
36 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
37 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
38 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
72 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
81 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
82 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
83 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
84 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
85 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
86 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
87 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
88 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
93 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
94 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
95 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
96 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
97 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
98 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
99 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
100 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
101 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
102 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
103 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
104 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
105 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
106 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
107 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
108 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
109 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
110 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
111 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
112 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
113 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
114 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
115 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
116 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
117 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
118 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
119 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
120 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
123 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
124 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
125 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
126 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
127 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
128 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
129 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
130 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
131 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
132 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
133 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
134 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
135 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
136 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
137 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
138 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
139 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
140 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
141 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
142 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
143 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
144 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
145 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
146 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
147 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
148 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
149 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
150 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
151 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
152 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
153 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
154 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
155 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
156 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
157 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
158 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
159 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
160 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
161 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
162 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
163 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
164 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
165 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
166 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
170 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
171 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
172 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
173 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
174 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
176 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
177 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
178 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
179 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
180 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
181 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
182 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
183 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.22
Metatranscriptomes 2.33
Isolates 5.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.56
Nodule 0.39
Rhizoplane 1.56
Rhizosphere 86.77
Stem 0
Stem Tuber 0
Unclassified 9.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10055275 3300003323 Bacteria 16806
2 rootH1_10297922 3300003323 Bacteria 2450
3 Ga0070683_100004843 3300005329 Bacteria 11143
4 Ga0070670_100088613 3300005331 Bacteria 2660
5 Ga0070666_10006866 3300005335 Bacteria 7011
6 Ga0070680_100043129 3300005336 Bacteria 3663
7 Ga0070688_100130057 3300005365 Bacteria 1697
8 Ga0070667_100026660 3300005367 Bacteria 4807
9 Ga0070709_10053513 3300005434 Bacteria 2542
10 Ga0070714_100016377 3300005435 Bacteria 5983
11 Ga0070681_10001886 3300005458 Bacteria 18915
12 Ga0070685_10043419 3300005466 Bacteria 2570
13 Ga0070679_100051734 3300005530 Bacteria 4091
14 Ga0070684_100190696 3300005535 Bacteria 1865
15 Ga0068853_100000357 3300005539 Bacteria 31469
16 Ga0070695_100068522 3300005545 Bacteria 2317
17 Ga0070665_100000126 3300005548 Bacteria 146495
18 Ga0070665_100002322 3300005548 Bacteria 21122
19 Ga0070665_100038120 3300005548 Bacteria 4831
20 Ga0068855_100000628 3300005563 Bacteria 43316
21 Ga0068855_100003136 3300005563 Bacteria 20214
22 Ga0068855_100124915 3300005563 Bacteria 2943
23 Ga0068863_100005568 3300005841 Bacteria 12378
24 Ga0068860_100151303 3300005843 Bacteria 2235
25 Ga0097621_100258774 3300006237 Bacteria 1526
26 Ga0079104_1001403 3300006946 Bacteria 16288
27 Ga0099795_10000030 3300007788 Bacteria 38487
28 Ga0099795_10007279 3300007788 Bacteria 3078
29 Ga0105251_10010120 3300009011 Bacteria 5501
30 Ga0105251_10010840 3300009011 Bacteria 5251
31 Ga0105251_10034493 3300009011 Bacteria 2503
32 Ga0105250_10002191 3300009092 Bacteria 9976
33 Ga0105240_10003073 3300009093 Bacteria 26216
34 Ga0105240_10005796 3300009093 Bacteria 18319
35 Ga0105240_10047069 3300009093 Bacteria 5460
36 Ga0105240_10104225 3300009093 Bacteria 3445
37 Ga0105240_10133796 3300009093 Bacteria 2971
38 Ga0105240_10315848 3300009093 Unclassified 1782
39 Ga0105241_10139491 3300009174 Bacteria 1972
40 Ga0105242_10120977 3300009176 Bacteria 2246
41 Ga0099796_10000134 3300010159 Bacteria 11202
42 Ga0105239_10249283 3300010375 Bacteria 1994
43 Ga0105246_10004087 3300011119 Bacteria 8855
44 Ga0157373_10027970 3300013100 Bacteria 4068
45 Ga0157371_10000949 3300013102 Bacteria 32394
46 Ga0157370_10163218 3300013104 Bacteria 2073
47 Ga0157369_10039894 3300013105 Bacteria 5129
48 Ga0163162_10000014 3300013306 Bacteria 268371
49 Ga0163162_10163483 3300013306 Bacteria 2349
50 Ga0157372_10259263 3300013307 Bacteria 2019
51 Ga0182007_10001670 3300015262 Bacteria 11756
52 Ga0163161_10022097 3300017792 Bacteria 4477
53 Ga0213872_10000050 3300021361 Bacteria 109093
54 Ga0209026_1004172 3300025250 Bacteria 4418
55 Ga0207696_1000776 3300025711 Bacteria 20994
56 Ga0207655_1003657 3300025728 Bacteria 11345
57 Ga0207713_1030482 3300025735 Bacteria 2401
58 Ga0207707_10003369 3300025912 Bacteria 14184
59 Ga0207707_10011812 3300025912 Bacteria 7595
60 Ga0207695_10005591 3300025913 Bacteria 16602
61 Ga0207695_10031787 3300025913 Bacteria 5783
62 Ga0207695_10034319 3300025913 Bacteria 5519
63 Ga0207695_10092619 3300025913 Unclassified 3032
64 Ga0207660_10049570 3300025917 Bacteria 2978
65 Ga0207660_10176827 3300025917 Bacteria 1655
66 Ga0207652_10031823 3300025921 Bacteria 4431
67 Ga0207664_10007152 3300025929 Bacteria 7739
68 Ga0207661_10251332 3300025944 Bacteria 1571
69 Ga0207667_10002658 3300025949 Bacteria 22087
70 Ga0207667_10010706 3300025949 Bacteria 10700
71 Ga0207667_10031609 3300025949 Bacteria 5712
72 Ga0207658_10018146 3300025986 Bacteria 4854
73 Ga0207639_10000517 3300026041 Bacteria 26621
74 Ga0209179_1000056 3300027512 Bacteria 20912
75 Ga0265354_1000766 3300028016 Bacteria 5228
76 Ga0268266_10000001 3300028379 Bacteria 4040580
77 Ga0268266_10000608 3300028379 Bacteria 48766
78 Ga0268264_10325959 3300028381 Bacteria 1454
79 Ga0265334_10013703 3300028573 Bacteria 3391
80 Ga0265323_10023509 3300028653 Bacteria 2349
81 Ga0307515_10036311 3300028794 Bacteria 7976
82 Ga0265770_1000066 3300030878 Bacteria 11368
83 Ga0265760_10001681 3300031090 Bacteria 6500
84 Ga0265331_10012366 3300031250 Bacteria 4625
85 Ga0265331_10012916 3300031250 Bacteria 4502
86 Ga0265331_10041166 3300031250 Bacteria 2245
87 Ga0265327_10000065 3300031251 Bacteria 225004
88 Ga0265327_10003123 3300031251 Bacteria 16278
89 Ga0265316_10090745 3300031344 Bacteria 2332
90 Ga0265316_10102666 3300031344 Bacteria 2172
91 Ga0307513_10031724 3300031456 Bacteria 5978
92 Ga0316575_10000063 3300031665 Bacteria 26008
93 Ga0316575_10032524 3300031665 Bacteria 2043
94 Ga0316579_10008563 3300031691 Bacteria 4270
95 Ga0316579_10009398 3300031691 Bacteria 4110
96 Ga0316579_10012284 3300031691 Bacteria 3660
97 Ga0316579_10028462 3300031691 Bacteria 2544
98 Ga0316579_10069890 3300031691 Bacteria 1662
99 Ga0316576_10000081 3300031727 Bacteria 32958
100 Ga0316576_10005590 3300031727 Bacteria 7707
101 Ga0316576_10114968 3300031727 Bacteria 2019
102 Ga0316578_10000442 3300031728 Bacteria 13731
103 Ga0316578_10001785 3300031728 Bacteria 9031
104 Ga0316578_10011538 3300031728 Bacteria 4629
105 Ga0316578_10023863 3300031728 Bacteria 3426
106 Ga0316578_10028771 3300031728 Bacteria 3149
107 Ga0316578_10044815 3300031728 Bacteria 2574
108 Ga0316578_10054521 3300031728 Bacteria 2345
109 Ga0307516_10000013 3300031730 Bacteria 217896
110 Ga0316577_10004630 3300031733 Bacteria 7130
111 Ga0316577_10010437 3300031733 Bacteria 5014
112 Ga0316577_10044408 3300031733 Bacteria 2485
113 Ga0316577_10090916 3300031733 Bacteria 1708
114 Ga0316583_10000883 3300032133 Bacteria 9586
115 Ga0316583_10005970 3300032133 Bacteria 4375
116 Ga0316583_10012165 3300032133 Bacteria 3104
117 Ga0316583_10030947 3300032133 Bacteria 1905
118 Ga0316580_10000533 3300032139 Bacteria 8828
119 Ga0316580_10005201 3300032139 Bacteria 3788
120 Ga0316593_10000213 3300032168 Bacteria 9235
121 Ga0316592_1000569 3300033524 Bacteria 5281
122 Ga0316588_1020584 3300033528 Bacteria 1495
123 Ga0316596_1000291 3300033541 Bacteria 7904
124 Ga0373953_0006097 3300035117 Bacteria 3953
125 Ga0373953_0058826 3300035117 Bacteria 1567
126 Ga0373954_0052039 3300035118 Bacteria 1924
127 Ga0373956_0000155 3300035119 Bacteria 25133
128 Ga0373956_0070144 3300035119 Bacteria 1598
129 Ga0373957_0000946 3300035120 Bacteria 7627
130 Ga0373943_0040690 3300035170 Bacteria 2245
131 Ga0373955_0002505 3300035172 Bacteria 8025
132 Ga0316574_0000837 3300035398 Bacteria 13436
133 Ga0316574_0002384 3300035398 Bacteria 9404
134 Ga0316574_0008658 3300035398 Bacteria 5660
135 Ga0316574_0093826 3300035398 Bacteria 1916
136 Ga0373924_0008111 3300035410 Bacteria 3804
137 Ga0373933_0009058 3300035724 Bacteria 5432
138 Ga0373933_0013877 3300035724 Bacteria 4470
139 Ga0373947_0063496 3300035725 Bacteria 2250
140 Ga0373937_0242325 3300036401 Bacteria 1699
141 Ga0316582_0006451 3300036647 Bacteria 6160
142 Ga0316582_0008984 3300036647 Bacteria 5400
143 Ga0316582_0021796 3300036647 Bacteria 3793
144 Ga0316582_0033993 3300036647 Bacteria 3136
145 Ga0316582_0062994 3300036647 Bacteria 2382
146 Ga0316584_0007397 3300036712 Bacteria 7505
147 Ga0316584_0011084 3300036712 Bacteria 6320
148 Ga0316584_0018478 3300036712 Bacteria 5030
149 Ga0316584_0022066 3300036712 Bacteria 4639
150 Ga0316584_0027145 3300036712 Bacteria 4212
151 Ga0316584_0061581 3300036712 Bacteria 2810
152 Ga0316584_0142771 3300036712 Bacteria 1785
153 Ga0316581_0001930 3300037588 Bacteria 4845
154 Ga0316581_0026067 3300037588 Bacteria 1742
155 Ga0395901_0001622 3300038443 Bacteria 23269
156 Ga0400483_004843 3300039062 Bacteria 2665
157 Ga0436360_0186477 3300039438 Bacteria 1639
158 Ga0436361_0269507 3300039447 Bacteria 102308
159 Ga0436362_0540583 3300039453 Bacteria 1145
160 Ga0439451_000001 3300042009 Viruses 317367
161 Ga0439452_003301 3300042010 Bacteria 5685
162 Ga0439463_004162 3300042016 Bacteria 3630
163 Ga0450907_000054 3300042146 Bacteria 48116
164 Ga0451577_0025632 3300042876 Bacteria 5349
165 Ga0451577_0265939 3300042876 Bacteria 1553
166 Ga0466969_0002634 3300044656 Bacteria 9599
167 Ga0453683_0032354 3300044673 Bacteria 3301
168 Ga0466966_0170353 3300044684 Bacteria 1323
169 Ga0453684_0205713 3300044712 Bacteria 2291
170 Ga0466959_0009179 3300045049 Bacteria 7023
171 Ga0466959_0011867 3300045049 Bacteria 6275
172 Ga0466959_0143356 3300045049 Bacteria 1687
173 Ga0451576_0000006 3300045051 Bacteria 949698
174 Ga0451576_0053781 3300045051 Bacteria 4216
175 Ga0451576_0223649 3300045051 Bacteria 1965
176 Ga0466967_0188501 3300045976 Bacteria 1948
177 Ga0495592_0015652 3300046454 Bacteria 5754
178 Ga0495591_005637 3300046458 Bacteria 5742
179 Ga0495591_030388 3300046458 Bacteria 1631
180 Ga0495629_0057203 3300046459 Bacteria 2727
181 Ga0495641_0010510 3300046461 Bacteria 5357
182 Ga0495651_0004288 3300046462 Bacteria 10933
183 Ga0495651_0078591 3300046462 Bacteria 2495
184 Ga0495653_0084681 3300046463 Bacteria 2334
185 Ga0495580_0022988 3300046472 Bacteria 4584
186 Ga0495662_0014111 3300046476 Bacteria 3888
187 Ga0495664_0002269 3300046477 Bacteria 10309
188 Ga0495608_0041707 3300046511 Bacteria 3070
189 Ga0495608_0120950 3300046511 Bacteria 1679
190 Ga0495637_0000022 3300046520 Bacteria 173150
191 Ga0495648_0000608 3300046524 Bacteria 38306
192 Ga0495648_0009247 3300046524 Bacteria 7660
193 Ga0495665_0026560 3300046531 Bacteria 3109
194 Ga0495640_0030525 3300046533 Bacteria 3857
195 Ga0495586_0032406 3300046535 Bacteria 2801
196 Ga0495622_0042315 3300046557 Bacteria 2118
197 Ga0495635_0010006 3300046663 Bacteria 6631
198 Ga0495657_0023194 3300046675 Bacteria 4436
199 Ga0495657_0078224 3300046675 Bacteria 2144
200 Ga0495647_0043026 3300046681 Bacteria 1726
201 Ga0495658_0067928 3300046683 Bacteria 2062
202 Ga0495649_0000012 3300046694 Bacteria 411150
203 Ga0495600_0009593 3300046809 Bacteria 5984
204 Ga0495604_0142539 3300047317 Bacteria 1711
205 Ga0495674_0008936 3300047319 Bacteria 9524
206 Ga0495672_0000025 3300047320 Bacteria 365425
207 Ga0495675_0005852 3300047444 Bacteria 7513
208 Ga0495679_000845 3300047446 Bacteria 19486
209 Ga0495686_0008328 3300047472 Bacteria 7622
210 Ga0495593_0033503 3300047673 Bacteria 2797
211 Ga0496100_0098586 3300048903 Bacteria 2009
212 Ga0496101_0048509 3300048904 Bacteria 3052
213 Ga0496105_0085294 3300048908 Bacteria 2609
214 Ga0496114_0007646 3300048917 Bacteria 8547
215 Ga0496116_0000009 3300048919 Bacteria 716119
216 Ga0496117_0000816 3300048920 Bacteria 48261
217 Ga0496118_0000242 3300048921 Bacteria 96394
218 Ga0496118_0001185 3300048921 Bacteria 40210
219 Ga0496119_0000261 3300048922 Bacteria 74726
220 Ga0496120_0000349 3300048923 Bacteria 76034
221 Ga0496121_0000057 3300048924 Bacteria 294291
222 Ga0496124_0005872 3300048927 Bacteria 13592
223 Ga0496125_0004134 3300048928 Bacteria 16948
224 Ga0496126_0056138 3300048929 Bacteria 3560
225 Ga0501036_0045833 3300049572 Bacteria 3703
226 Ga0501040_0007878 3300049576 Bacteria 6904
227 Ga0501041_0049472 3300049577 Bacteria 2560
228 Ga0501046_0082707 3300049580 Bacteria 2479
229 Ga0501071_0023213 3300049587 Bacteria 4331
230 Ga0501072_0015732 3300049588 Bacteria 5798
231 Ga0501077_0027981 3300049593 Bacteria 3582
232 Ga0501079_0056158 3300049741 Bacteria 3038
233 Ga0501081_0004442 3300049743 Bacteria 8991
234 Ga0501035_0028095 3300049822 Bacteria 5137
235 Ga0501045_0012641 3300049824 Bacteria 5943
236 Ga0495595_0004520 3300053084 Bacteria 5597
237 Ga0495619_0011201 3300053085 Bacteria 5640
238 Ga0500643_004581 3300053087 Bacteria 6191
239 Ga0500597_000054 3300053120 Bacteria 22971
240 Ga0500607_003417 3300053121 Bacteria 11653
241 Ga0500637_0048194 3300053178 Bacteria 2422
242 Ga0501082_0040662 3300060353 Bacteria 4009
243 Ga0530510_0006188 3300061734 Bacteria 8320

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039453 Ga0436362_0540583 Ga0436362_0540583_66_1070 330
2 3300046511 Ga0495608_0041707 Ga0495608_0041707_1370_2404 343
3 3300046681 Ga0495647_0043026 Ga0495647_0043026_668_1702 343
4 3300045049 Ga0466959_0143356 Ga0466959_0143356_629_1675 344
5 3300025912 Ga0207707_10003369 Ga0207707_100033696 359
6 iso_pu_bacteria 2687453129 2687579639 361
7 3300005458 Ga0070681_10001886 Ga0070681_1000188613 363
8 3300005545 Ga0070695_100068522 Ga0070695_1000685222 363
9 iso_pu_bacteria 2952252522 2952255529 363
10 3300053087 Ga0500643_004581 Ga0500643_004581_2541_3788 368
11 3300053120 Ga0500597_000054 Ga0500597_000054_2386_3633 368
12 3300009093 Ga0105240_10104225 Ga0105240_101042254 372
13 3300007788 Ga0099795_10000030 Ga0099795_1000003027 374
14 3300010159 Ga0099796_10000134 Ga0099796_100001344 374
15 3300027512 Ga0209179_1000056 Ga0209179_100005613 374
16 3300035117 Ga0373953_0006097 Ga0373953_0006097_31_1164 376
17 3300035117 Ga0373953_0058826 Ga0373953_0058826_99_1232 376
18 3300035118 Ga0373954_0052039 Ga0373954_0052039_11_1144 376
19 3300035119 Ga0373956_0000155 Ga0373956_0000155_12168_13301 376
20 3300035119 Ga0373956_0070144 Ga0373956_0070144_330_1463 376
21 3300035120 Ga0373957_0000946 Ga0373957_0000946_5058_6191 376
22 3300035170 Ga0373943_0040690 Ga0373943_0040690_966_2099 376
23 3300035172 Ga0373955_0002505 Ga0373955_0002505_5882_7015 376
24 3300035410 Ga0373924_0008111 Ga0373924_0008111_101_1234 376
25 3300035724 Ga0373933_0009058 Ga0373933_0009058_211_1344 376
26 3300035724 Ga0373933_0013877 Ga0373933_0013877_2671_3804 376
27 3300035725 Ga0373947_0063496 Ga0373947_0063496_682_1815 376
28 3300046454 Ga0495592_0015652 Ga0495592_0015652_1627_2760 376
29 3300046459 Ga0495629_0057203 Ga0495629_0057203_432_1565 376
30 3300046461 Ga0495641_0010510 Ga0495641_0010510_2564_3697 376
31 3300046462 Ga0495651_0004288 Ga0495651_0004288_8896_10029 376
32 3300046462 Ga0495651_0078591 Ga0495651_0078591_1060_2193 376
33 3300046463 Ga0495653_0084681 Ga0495653_0084681_81_1214 376
34 3300046472 Ga0495580_0022988 Ga0495580_0022988_136_1269 376
35 3300046476 Ga0495662_0014111 Ga0495662_0014111_566_1699 376
36 3300046477 Ga0495664_0002269 Ga0495664_0002269_6487_7620 376
37 3300046511 Ga0495608_0120950 Ga0495608_0120950_478_1611 376
38 3300046531 Ga0495665_0026560 Ga0495665_0026560_1189_2322 376
39 3300046533 Ga0495640_0030525 Ga0495640_0030525_1309_2442 376
40 3300046535 Ga0495586_0032406 Ga0495586_0032406_360_1493 376
41 3300046557 Ga0495622_0042315 Ga0495622_0042315_387_1520 376
42 3300046663 Ga0495635_0010006 Ga0495635_0010006_23_1156 376
43 3300046675 Ga0495657_0023194 Ga0495657_0023194_1541_2674 376
44 3300046675 Ga0495657_0078224 Ga0495657_0078224_802_1935 376
45 3300046683 Ga0495658_0067928 Ga0495658_0067928_612_1745 376
46 3300046809 Ga0495600_0009593 Ga0495600_0009593_3874_5007 376
47 3300047317 Ga0495604_0142539 Ga0495604_0142539_167_1300 376
48 3300047319 Ga0495674_0008936 Ga0495674_0008936_3671_4804 376
49 3300047444 Ga0495675_0005852 Ga0495675_0005852_2681_3814 376
50 3300047673 Ga0495593_0033503 Ga0495593_0033503_335_1468 376
51 3300053084 Ga0495595_0004520 Ga0495595_0004520_4022_5155 376
52 3300053085 Ga0495619_0011201 Ga0495619_0011201_1590_2723 376
53 3300036647 Ga0316582_0008984 Ga0316582_0008984_4223_5374 378
54 3300047472 Ga0495686_0008328 Ga0495686_0008328_3945_5255 380
55 3300035398 Ga0316574_0002384 Ga0316574_0002384_7918_9150 386
56 3300031728 Ga0316578_10054521 Ga0316578_100545212 393
57 3300039438 Ga0436360_0186477 Ga0436360_0186477_307_1542 393
58 3300039062 Ga0400483_004843 Ga0400483_004843_789_2012 394
59 3300031691 Ga0316579_10069890 Ga0316579_100698901 396
60 3300042876 Ga0451577_0025632 Ga0451577_0025632_4006_5271 396
61 3300045051 Ga0451576_0223649 Ga0451576_0223649_127_1392 396
62 3300028016 Ga0265354_1000766 Ga0265354_10007662 397
63 3300030878 Ga0265770_1000066 Ga0265770_10000668 397
64 3300031090 Ga0265760_10001681 Ga0265760_100016814 397
65 3300031728 Ga0316578_10028771 Ga0316578_100287712 397
66 3300031733 Ga0316577_10044408 Ga0316577_100444082 397
67 3300036712 Ga0316584_0061581 Ga0316584_0061581_281_1558 397
68 3300036712 Ga0316584_0142771 Ga0316584_0142771_220_1446 397
69 3300045049 Ga0466959_0009179 Ga0466959_0009179_1259_2464 397
70 iso_pu_bacteria 2846037992 2846039465 399
71 3300028573 Ga0265334_10013703 Ga0265334_100137032 400
72 3300031250 Ga0265331_10012916 Ga0265331_100129164 400
73 iso_pu_bacteria 2511231026 2511384030 401
74 3300044673 Ga0453683_0032354 Ga0453683_0032354_612_1835 402
75 3300045051 Ga0451576_0000006 Ga0451576_0000006_791076_792299 402
76 3300005331 Ga0070670_100088613 Ga0070670_1000886132 403
77 3300005335 Ga0070666_10006866 Ga0070666_100068666 403
78 3300005843 Ga0068860_100151303 Ga0068860_1001513031 403
79 3300010375 Ga0105239_10249283 Ga0105239_102492832 403
80 3300031250 Ga0265331_10012366 Ga0265331_100123667 403
81 3300031251 Ga0265327_10000065 Ga0265327_100000656 403
82 3300031251 Ga0265327_10003123 Ga0265327_100031239 403
83 3300036647 Ga0316582_0006451 Ga0316582_0006451_3498_4718 403
84 3300053121 Ga0500607_003417 Ga0500607_003417_9471_10685 403
85 3300053178 Ga0500637_0048194 Ga0500637_0048194_694_1908 403
86 iso_pu_bacteria 2846033681 2846037829 403
87 iso_pu_bacteria 2865014394 2865016841 403
88 iso_pu_bacteria 2945951305 2945955564 403
89 3300021361 Ga0213872_10000050 Ga0213872_1000005020 404
90 3300038443 Ga0395901_0001622 Ga0395901_0001622_11750_12979 404
91 3300039447 Ga0436361_0269507 Ga0436361_0269507_18591_19832 404
92 iso_pu_bacteria 2643221603 2644028186 404
93 3300028794 Ga0307515_10036311 Ga0307515_100363114 405
94 3300031456 Ga0307513_10031724 Ga0307513_100317246 405
95 iso_pu_bacteria 2923525760 2923525805 405
96 3300013306 Ga0163162_10163483 Ga0163162_101634833 406
97 3300028653 Ga0265323_10023509 Ga0265323_100235092 406
98 3300031250 Ga0265331_10041166 Ga0265331_100411662 406
99 3300031344 Ga0265316_10102666 Ga0265316_101026663 406
100 3300048904 Ga0496101_0048509 Ga0496101_0048509_57_1313 406
101 iso_pu_bacteria 2654587920 2656277396 406
102 iso_pu_bacteria 2687453601 2689447035 406
103 iso_pu_bacteria 2895395659 2895396041 406
104 iso_pu_bacteria 2919493220 2919495995 406
105 iso_pu_bacteria 2919543075 2919544774 406
106 3300005365 Ga0070688_100130057 Ga0070688_1001300571 407
107 3300005435 Ga0070714_100016377 Ga0070714_1000163774 407
108 3300005466 Ga0070685_10043419 Ga0070685_100434192 407
109 3300005539 Ga0068853_100000357 Ga0068853_1000003576 407
110 3300005548 Ga0070665_100038120 Ga0070665_1000381203 407
111 3300005563 Ga0068855_100003136 Ga0068855_10000313611 407
112 3300005841 Ga0068863_100005568 Ga0068863_1000055689 407
113 3300009011 Ga0105251_10034493 Ga0105251_100344932 407
114 3300009093 Ga0105240_10003073 Ga0105240_1000307323 407
115 3300011119 Ga0105246_10004087 Ga0105246_100040874 407
116 3300015262 Ga0182007_10001670 Ga0182007_100016708 407
117 3300017792 Ga0163161_10022097 Ga0163161_100220974 407
118 3300025250 Ga0209026_1004172 Ga0209026_10041724 407
119 3300025711 Ga0207696_1000776 Ga0207696_100077616 407
120 3300025728 Ga0207655_1003657 Ga0207655_10036576 407
121 3300025735 Ga0207713_1030482 Ga0207713_10304822 407
122 3300025929 Ga0207664_10007152 Ga0207664_100071523 407
123 3300025949 Ga0207667_10010706 Ga0207667_100107063 407
124 3300026041 Ga0207639_10000517 Ga0207639_100005175 407
125 3300031665 Ga0316575_10000063 Ga0316575_1000006319 407
126 3300031727 Ga0316576_10000081 Ga0316576_100000817 407
127 3300031727 Ga0316576_10005590 Ga0316576_100055906 407
128 3300031728 Ga0316578_10001785 Ga0316578_100017854 407
129 3300031728 Ga0316578_10023863 Ga0316578_100238633 407
130 3300031733 Ga0316577_10004630 Ga0316577_100046302 407
131 3300031733 Ga0316577_10090916 Ga0316577_100909162 407
132 3300032133 Ga0316583_10005970 Ga0316583_100059705 407
133 3300032139 Ga0316580_10005201 Ga0316580_100052014 407
134 3300035398 Ga0316574_0093826 Ga0316574_0093826_307_1545 407
135 3300036647 Ga0316582_0062994 Ga0316582_0062994_654_1892 407
136 3300036712 Ga0316584_0018478 Ga0316584_0018478_1367_2605 407
137 3300042010 Ga0439452_003301 Ga0439452_003301_1074_2339 407
138 3300042016 Ga0439463_004162 Ga0439463_004162_260_1525 407
139 3300042146 Ga0450907_000054 Ga0450907_000054_12066_13331 407
140 3300045976 Ga0466967_0188501 Ga0466967_0188501_216_1457 407
141 3300046458 Ga0495591_030388 Ga0495591_030388_354_1619 407
142 3300046524 Ga0495648_0009247 Ga0495648_0009247_1438_2703 407
143 3300047320 Ga0495672_0000025 Ga0495672_0000025_69169_70434 407
144 3300047446 Ga0495679_000845 Ga0495679_000845_2174_3439 407
145 3300048903 Ga0496100_0098586 Ga0496100_0098586_68_1333 407
146 3300048908 Ga0496105_0085294 Ga0496105_0085294_262_1527 407
147 3300048921 Ga0496118_0000242 Ga0496118_0000242_2239_3504 407
148 3300048922 Ga0496119_0000261 Ga0496119_0000261_609_1874 407
149 3300048923 Ga0496120_0000349 Ga0496120_0000349_69733_70998 407
150 3300048924 Ga0496121_0000057 Ga0496121_0000057_19323_20588 407
151 3300048927 Ga0496124_0005872 Ga0496124_0005872_8209_9474 407
152 3300048928 Ga0496125_0004134 Ga0496125_0004134_6411_7676 407
153 3300049572 Ga0501036_0045833 Ga0501036_0045833_85_1308 407
154 3300049576 Ga0501040_0007878 Ga0501040_0007878_5620_6843 407
155 3300049577 Ga0501041_0049472 Ga0501041_0049472_1156_2379 407
156 3300049580 Ga0501046_0082707 Ga0501046_0082707_13_1236 407
157 3300049587 Ga0501071_0023213 Ga0501071_0023213_102_1325 407
158 3300049588 Ga0501072_0015732 Ga0501072_0015732_2466_3689 407
159 3300049593 Ga0501077_0027981 Ga0501077_0027981_2170_3393 407
160 3300049741 Ga0501079_0056158 Ga0501079_0056158_1744_2967 407
161 3300049743 Ga0501081_0004442 Ga0501081_0004442_6088_7311 407
162 3300049824 Ga0501045_0012641 Ga0501045_0012641_4676_5899 407
163 3300060353 Ga0501082_0040662 Ga0501082_0040662_2730_3953 407
164 3300061734 Ga0530510_0006188 Ga0530510_0006188_942_2165 407
165 3300005535 Ga0070684_100190696 Ga0070684_1001906962 408
166 3300005563 Ga0068855_100124915 Ga0068855_1001249153 408
167 3300009093 Ga0105240_10005796 Ga0105240_1000579617 408
168 3300009093 Ga0105240_10047069 Ga0105240_100470693 408
169 3300009174 Ga0105241_10139491 Ga0105241_101394911 408
170 3300013104 Ga0157370_10163218 Ga0157370_101632182 408
171 3300013307 Ga0157372_10259263 Ga0157372_102592632 408
172 3300025912 Ga0207707_10011812 Ga0207707_100118127 408
173 3300025913 Ga0207695_10031787 Ga0207695_100317873 408
174 3300025917 Ga0207660_10176827 Ga0207660_101768271 408
175 3300025949 Ga0207667_10031609 Ga0207667_100316093 408
176 3300031691 Ga0316579_10028462 Ga0316579_100284621 408
177 3300031727 Ga0316576_10114968 Ga0316576_101149681 408
178 3300035398 Ga0316574_0008658 Ga0316574_0008658_3468_4742 408
179 3300036401 Ga0373937_0242325 Ga0373937_0242325_277_1503 408
180 3300036647 Ga0316582_0033993 Ga0316582_0033993_525_1760 408
181 3300037588 Ga0316581_0001930 Ga0316581_0001930_1728_2963 408
182 3300042009 Ga0439451_000001 Ga0439451_000001_34906_36138 408
183 3300042876 Ga0451577_0265939 Ga0451577_0265939_175_1404 408
184 3300003323 rootH1_10297922 rootH1_102979222 409
185 3300031344 Ga0265316_10090745 Ga0265316_100907453 409
186 3300044712 Ga0453684_0205713 Ga0453684_0205713_667_1902 409
187 3300045051 Ga0451576_0053781 Ga0451576_0053781_1102_2337 409
188 3300048917 Ga0496114_0007646 Ga0496114_0007646_2482_3753 409
189 3300005329 Ga0070683_100004843 Ga0070683_1000048435 410
190 3300005336 Ga0070680_100043129 Ga0070680_1000431292 410
191 3300005367 Ga0070667_100026660 Ga0070667_1000266603 410
192 3300005434 Ga0070709_10053513 Ga0070709_100535133 410
193 3300005530 Ga0070679_100051734 Ga0070679_1000517344 410
194 3300005548 Ga0070665_100000126 Ga0070665_10000012656 410
195 3300005548 Ga0070665_100002322 Ga0070665_10000232214 410
196 3300006237 Ga0097621_100258774 Ga0097621_1002587741 410
197 3300006946 Ga0079104_1001403 Ga0079104_10014037 410
198 3300007788 Ga0099795_10007279 Ga0099795_100072793 410
199 3300009011 Ga0105251_10010120 Ga0105251_100101202 410
200 3300009011 Ga0105251_10010840 Ga0105251_100108402 410
201 3300009092 Ga0105250_10002191 Ga0105250_100021915 410
202 3300009093 Ga0105240_10133796 Ga0105240_101337963 410
203 3300009093 Ga0105240_10315848 Ga0105240_103158482 410
204 3300009176 Ga0105242_10120977 Ga0105242_101209772 410
205 3300013100 Ga0157373_10027970 Ga0157373_100279703 410
206 3300013102 Ga0157371_10000949 Ga0157371_100009494 410
207 3300013105 Ga0157369_10039894 Ga0157369_100398945 410
208 3300025913 Ga0207695_10034319 Ga0207695_100343194 410
209 3300025913 Ga0207695_10092619 Ga0207695_100926193 410
210 3300025917 Ga0207660_10049570 Ga0207660_100495702 410
211 3300025921 Ga0207652_10031823 Ga0207652_100318233 410
212 3300025944 Ga0207661_10251332 Ga0207661_102513322 410
213 3300025986 Ga0207658_10018146 Ga0207658_100181464 410
214 3300028379 Ga0268266_10000001 Ga0268266_10000001627 410
215 3300028379 Ga0268266_10000608 Ga0268266_1000060813 410
216 3300028381 Ga0268264_10325959 Ga0268264_103259592 410
217 3300031691 Ga0316579_10008563 Ga0316579_100085634 410
218 3300031691 Ga0316579_10012284 Ga0316579_100122842 410
219 3300031728 Ga0316578_10000442 Ga0316578_100004427 410
220 3300031728 Ga0316578_10011538 Ga0316578_100115384 410
221 3300031728 Ga0316578_10044815 Ga0316578_100448153 410
222 3300031733 Ga0316577_10010437 Ga0316577_100104372 410
223 3300032133 Ga0316583_10012165 Ga0316583_100121653 410
224 3300032139 Ga0316580_10000533 Ga0316580_100005334 410
225 3300032168 Ga0316593_10000213 Ga0316593_100002135 410
226 3300033524 Ga0316592_1000569 Ga0316592_10005697 410
227 3300033528 Ga0316588_1020584 Ga0316588_10205841 410
228 3300033541 Ga0316596_1000291 Ga0316596_10002918 410
229 3300035398 Ga0316574_0000837 Ga0316574_0000837_420_1670 410
230 3300036647 Ga0316582_0021796 Ga0316582_0021796_807_2057 410
231 3300036712 Ga0316584_0007397 Ga0316584_0007397_5792_7084 410
232 3300036712 Ga0316584_0027145 Ga0316584_0027145_2435_3685 410
233 3300044656 Ga0466969_0002634 Ga0466969_0002634_6922_8166 410
234 3300044684 Ga0466966_0170353 Ga0466966_0170353_27_1271 410
235 3300045049 Ga0466959_0011867 Ga0466959_0011867_4098_5342 410
236 3300048919 Ga0496116_0000009 Ga0496116_0000009_494600_495844 410
237 3300048920 Ga0496117_0000816 Ga0496117_0000816_39829_41073 410
238 3300048921 Ga0496118_0001185 Ga0496118_0001185_4579_5823 410
239 3300048929 Ga0496126_0056138 Ga0496126_0056138_357_1595 410
240 3300003323 rootH1_10055275 rootH1_1005527511 411
241 3300005563 Ga0068855_100000628 Ga0068855_10000062820 411
242 3300013306 Ga0163162_10000014 Ga0163162_10000014126 411
243 3300025913 Ga0207695_10005591 Ga0207695_1000559113 411
244 3300025949 Ga0207667_10002658 Ga0207667_1000265817 411
245 3300031665 Ga0316575_10032524 Ga0316575_100325242 411
246 3300031691 Ga0316579_10009398 Ga0316579_100093984 411
247 3300031730 Ga0307516_10000013 Ga0307516_1000001333 411
248 3300032133 Ga0316583_10000883 Ga0316583_100008838 411
249 3300032133 Ga0316583_10030947 Ga0316583_100309472 411
250 3300036712 Ga0316584_0011084 Ga0316584_0011084_1924_3369 411
251 3300036712 Ga0316584_0022066 Ga0316584_0022066_2589_3839 411
252 3300037588 Ga0316581_0026067 Ga0316581_0026067_320_1570 411
253 3300046458 Ga0495591_005637 Ga0495591_005637_1827_3071 411
254 3300046520 Ga0495637_0000022 Ga0495637_0000022_48454_49698 411
255 3300046524 Ga0495648_0000608 Ga0495648_0000608_5826_7070 411
256 3300046694 Ga0495649_0000012 Ga0495649_0000012_323648_324892 411
257 3300049822 Ga0501035_0028095 Ga0501035_0028095_852_2096 411

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12627

PolyA_pol_RNAbd

Probable RNA and SrmB- binding site of polymerase A

178

243

0.97

PF01966

HD

HD domain

257

360

0.85

PF01743

PolyA_pol

Poly A polymerase head domain

31

151

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h39-assembly3.cif.gz_B the complex structure of cca-adding enzyme with atp 0.7135 2 408
3h3a-assembly1.cif.gz_A the complex structure of cca-adding enzyme with ctp 0.7087 2 400
4wbz-assembly2.cif.gz_B trna-processing enzyme (apo form 2) 0.7033 2 398
1ou5-assembly1.cif.gz_B crystal structure of human cca-adding enzyme 0.6996 2 365
3h38-assembly1.cif.gz_A the structure of cca-adding enzyme apo form ii 0.695 2 411
ID Description Score Start End Superfamily
af_P06961_125_350_1.10.3090.10 Mainly Alpha;Orthogonal Bundle;cca-adding enzyme, domain 2;cca-adding enzyme, domain 2 0.9923 125 349 1.10.3090.10
af_P06961_125_350_1.10.3090.10 Mainly Alpha;Orthogonal Bundle;cca-adding enzyme, domain 2;cca-adding enzyme, domain 2 0.9836 125 349 1.10.3090.10
af_P06961_1_124_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9782 1 124 3.30.460.10
af_P06961_1_124_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9705 1 124 3.30.460.10
3h37A02 Mainly Alpha;Orthogonal Bundle;Hydrophobic Seed Protein; 0.8749 120 199 1.10.110.30
ID Description Score Start End GO Terms
AF-I1YJ19-F1-model_v4 Multifunctional CCA protein [Includes: CCA-adding enzyme (EC 2.7.7.72) (CCA tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA nucleotidyltransferase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cyclic phosphodiesterase (EC 3.1.4.-); Phosphatase] 0.9869 2 409 GO:0000049
GO:0000287
GO:0001680
GO:0004112
GO:0005524
GO:0016791
GO:0042245
GO:0160016
AF-A0A2J4ZB43-F1-model_v4 Multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 0.9862 151 406 GO:0016740
AF-A0A2T5H683-F1-model_v4 Multifunctional CCA protein [Includes: CCA-adding enzyme (EC 2.7.7.72) (CCA tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA nucleotidyltransferase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cyclic phosphodiesterase (EC 3.1.4.-); Phosphatase] 0.9861 1 408 GO:0000049
GO:0000287
GO:0001680
GO:0004112
GO:0005524
GO:0016791
GO:0042245
GO:0160016
AF-A0A352MVP7-F1-model_v4 tRNA adenylyltransferase 0.9857 119 309 GO:0016779
AF-A0A376UGC2-F1-model_v4 Multifunctional Cca protein [includes: tRNA nucleotidyltransferase 2'-nucleotidase 2',3'-cyclic phosphodiesterase phosphatase] (EC 3.1.3.-) 0.9854 139 323 GO:0016740
GO:0016787

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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