F360354

General Info

Members Datasets Scaffolds Average Seq Length
248 146 496 386

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8025530807|8025532061
Length 424
Sequence ILDIHVLQTVPPSNLNRDDTGAPKSAVYGGVRRARVSSQAWKRATRKAFDGLLDPSELGVRTKKVADVVAEQIMVHDPSLPEAAAWELAAETVETATGSKLNAPKRKNKARPGDDETNESAAESSYLMFLSARQVGALAALAVEGAKDGDRKTLKEFFKVKENKARAKKAVETGHSVDIALFGRMVADSTDLNVDAATQVAHALSVHPVELESDYFTAVDDRNTNAETGAGMIGTVDFNSATLYRYAAVDVDQLQRNLGPGLREDQSVSAPARHAVAAFLEAFITSLPTGKINTFGNHTLPAAVIVKLRTRRPISFVAAFEQPVRQGENGGFLRESCDRLATYVPGLEEAYGLTGPEGHTDGGQSWVLRVGAETEALAALGTEVTLPAMVKAVADAVAERLEEAAAGQGKRPATEHSEHTEQTV

Samples

Sample ID Description Type Environment
1 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
2 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
3 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
4 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
9 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
10 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
11 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
12 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
13 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
14 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
15 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
16 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
22 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
23 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
24 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
25 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
26 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
27 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
28 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
29 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
30 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
31 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
32 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
33 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
34 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
35 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
36 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
37 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
38 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
39 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
40 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
41 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
42 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
43 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
44 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
45 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
46 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
47 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
48 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
49 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
50 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
51 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
52 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
53 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
54 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
55 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
56 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
58 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
72 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
73 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
74 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
75 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
76 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
77 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
78 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
81 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
82 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
83 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
84 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
85 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
86 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
87 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
88 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
89 2508501039 Frankia saprophytica CN3 Isolate Nodule
90 2527291627 Frankia casuarinae Thr Isolate Nodule
91 2527291629 Frankia sp. BMG5.23 Isolate Nodule
92 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
93 2576861822 Frankia sp. CeD Isolate Nodule
94 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
95 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
96 2619618881 Frankia sp. ACN1ag Isolate Unclassified
97 2619619003 Frankia sp. CpI1-P Isolate Nodule
98 2643221578 Streptomyces sp. Root63 Isolate Unclassified
99 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
100 2643221714 Streptomyces sp. Root264 Isolate Unclassified
101 2671180195 Frankia sp. CcI49 Isolate Nodule
102 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
103 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
104 2684623036 Frankia sp. CgIM4 Isolate Nodule
105 2710264753 Frankia sp. KB5 Isolate Nodule
106 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
107 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
108 2773857922 Frankia sp. CcI49 Isolate Nodule
109 2773857924 Frankia sp. CgIS1 Isolate Nodule
110 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
111 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
112 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
113 2855683550 Micromonospora sp. RP3T Isolate Unclassified
114 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
115 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
116 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
117 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
118 2867369537 Streptomyces sp. Z26 Isolate Unclassified
119 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
120 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
121 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
122 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
123 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
124 2919395869 Microbacterium resistens 2980 Isolate Unclassified
125 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
126 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
127 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
128 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
129 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
130 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
131 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
132 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
133 637000116 Frankia casuarinae CcI3 Isolate Nodule
134 8002775197 Frankia nepalensis CN7 Isolate Nodule
135 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
136 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
137 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
138 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
139 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
140 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
141 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
142 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
143 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
144 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
145 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
146 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75
Metatranscriptomes 0
Isolates 25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 5.24
Rhizoplane 0.81
Rhizosphere 76.21
Stem 0
Stem Tuber 0.4
Unclassified 0.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070714_100000116 3300005435 Bacteria 64800
2 Ga0070710_10011326 3300005437 Bacteria 4406
3 Ga0070708_100115744 3300005445 Bacteria 2468
4 Ga0070663_100037574 3300005455 Bacteria 3372
5 Ga0068855_100183886 3300005563 Bacteria 2362
6 Ga0081455_10000765 3300005937 Bacteria 41740
7 Ga0081538_10048564 3300005981 Bacteria 2586
8 Ga0075430_100006965 3300006846 Bacteria 9531
9 Ga0075430_100076916 3300006846 Bacteria 2797
10 Ga0075431_100002440 3300006847 Bacteria 17890
11 Ga0075431_100005931 3300006847 Bacteria 12086
12 Ga0075431_100134860 3300006847 Bacteria 2545
13 Ga0075429_100331762 3300006880 Bacteria 1331
14 Ga0105247_10000272 3300009101 Bacteria 48034
15 Ga0105247_10000337 3300009101 Bacteria 41002
16 Ga0105237_10004598 3300009545 Bacteria 15928
17 Ga0105237_10012037 3300009545 Bacteria 9137
18 Ga0157371_10001386 3300013102 Bacteria 25338
19 Ga0163163_10010697 3300014325 Bacteria 8270
20 Ga0157376_10042562 3300014969 Bacteria 3723
21 Ga0207692_10007754 3300025898 Bacteria 4412
22 Ga0207710_10000225 3300025900 Bacteria 48938
23 Ga0207710_10000256 3300025900 Bacteria 44318
24 Ga0207671_10002011 3300025914 Bacteria 22352
25 Ga0207671_10003389 3300025914 Bacteria 15946
26 Ga0207664_10000002 3300025929 Bacteria 657053
27 Ga0207678_10025950 3300026067 Bacteria 5112
28 Ga0307517_10012345 3300028786 Bacteria 11737
29 Ga0307515_10044387 3300028794 Bacteria 6869
30 Ga0307511_10005239 3300030521 Bacteria 13205
31 Ga0307512_10005146 3300030522 Bacteria 13820
32 Ga0316579_10000786 3300031691 Bacteria 10909
33 Ga0307416_100016438 3300032002 Bacteria 5145
34 Ga0307510_10038292 3300033180 Bacteria 5304
35 Ga0395899_0043090 3300037312 Bacteria 3367
36 Ga0395900_0015901 3300037418 Bacteria 7665
37 Ga0395900_0018795 3300037418 Bacteria 7048
38 Ga0395898_0000246 3300037466 Bacteria 135487
39 Ga0395898_0052221 3300037466 Bacteria 3994
40 Ga0436364_0580564 3300037853 Bacteria 4479
41 Ga0395901_0026453 3300038443 Bacteria 5957
42 Ga0395901_0088779 3300038443 Bacteria 3234
43 Ga0400484_31096 3300038725 Bacteria 4487
44 Ga0400490_52464 3300038726 Bacteria 9866
45 Ga0400486_28950 3300038742 Bacteria 5113
46 Ga0400483_113735 3300039062 Bacteria 12166
47 Ga0400483_195596 3300039062 Bacteria 42851
48 Ga0451853_0841053 3300041512 Bacteria 8552
49 Ga0450894_003790 3300042131 Bacteria 1974
50 Ga0450896_003035 3300042133 Bacteria 2208
51 Ga0450898_003899 3300042134 Bacteria 2174
52 Ga0466969_0029910 3300044656 Bacteria 2778
53 Ga0466961_0077136 3300044693 Bacteria 2111
54 Ga0453684_0034901 3300044712 Bacteria 6967
55 Ga0466959_0020974 3300045049 Bacteria 4817
56 Ga0466959_0095321 3300045049 Bacteria 2134
57 Ga0495651_0001796 3300046462 Bacteria 16539
58 Ga0495662_0013545 3300046476 Bacteria 3969
59 Ga0495666_0029942 3300046526 Bacteria 2675
60 Ga0495652_0015713 3300046529 Bacteria 6775
61 Ga0495635_0027391 3300046663 Bacteria 3965
62 Ga0495613_0106538 3300046689 Bacteria 2022
63 Ga0495604_0040815 3300047317 Bacteria 3642
64 Ga0495687_004258 3300047443 Bacteria 9798
65 Ga0496119_0009750 3300048922 Bacteria 8175
66 Ga0496120_0001314 3300048923 Bacteria 30811
67 Ga0496120_0008757 3300048923 Bacteria 7275
68 Ga0496125_0000047 3300048928 Bacteria 294084
69 Ga0501031_0000020 3300049568 Bacteria 96865
70 Ga0501031_0011222 3300049568 Bacteria 5840
71 Ga0501032_0016640 3300049569 Bacteria 5169
72 Ga0501032_0016834 3300049569 Bacteria 5137
73 Ga0501032_0034695 3300049569 Bacteria 3452
74 Ga0501032_0036919 3300049569 Bacteria 3334
75 Ga0501032_0037826 3300049569 Bacteria 3288
76 Ga0501032_0051472 3300049569 Bacteria 2777
77 Ga0501032_0115235 3300049569 Bacteria 1777
78 Ga0501033_0003300 3300049570 Bacteria 13335
79 Ga0501033_0014294 3300049570 Bacteria 6033
80 Ga0501033_0014823 3300049570 Bacteria 5919
81 Ga0501033_0030378 3300049570 Bacteria 4061
82 Ga0501033_0034320 3300049570 Bacteria 3807
83 Ga0501033_0035593 3300049570 Bacteria 3732
84 Ga0501034_0006343 3300049571 Bacteria 12740
85 Ga0501034_0009158 3300049571 Bacteria 10385
86 Ga0501034_0012667 3300049571 Bacteria 8701
87 Ga0501034_0030683 3300049571 Bacteria 5463
88 Ga0501034_0036883 3300049571 Bacteria 4950
89 Ga0501034_0041054 3300049571 Bacteria 4681
90 Ga0501036_0001273 3300049572 Bacteria 19336
91 Ga0501036_0002980 3300049572 Bacteria 13460
92 Ga0501036_0004368 3300049572 Bacteria 11406
93 Ga0501036_0015797 3300049572 Bacteria 6307
94 Ga0501036_0056148 3300049572 Bacteria 3336
95 Ga0501037_0001822 3300049573 Bacteria 15486
96 Ga0501037_0063086 3300049573 Bacteria 2701
97 Ga0501037_0088550 3300049573 Bacteria 2240
98 Ga0501037_0090085 3300049573 Bacteria 2219
99 Ga0501037_0113989 3300049573 Bacteria 1946
100 Ga0501038_0005244 3300049574 Bacteria 12048
101 Ga0501038_0011499 3300049574 Bacteria 8076
102 Ga0501038_0026944 3300049574 Bacteria 5116
103 Ga0501038_0031627 3300049574 Bacteria 4675
104 Ga0501038_0036967 3300049574 Bacteria 4284
105 Ga0501038_0037076 3300049574 Bacteria 4277
106 Ga0501038_0052193 3300049574 Bacteria 3526
107 Ga0501038_0058699 3300049574 Bacteria 3298
108 Ga0501039_0037667 3300049575 Bacteria 3734
109 Ga0501039_0046399 3300049575 Bacteria 3356
110 Ga0501039_0309738 3300049575 Bacteria 1241
111 Ga0501040_0005922 3300049576 Bacteria 7918
112 Ga0501040_0146434 3300049576 Bacteria 1665
113 Ga0501041_0056207 3300049577 Bacteria 2404
114 Ga0501042_0010000 3300049578 Bacteria 6343
115 Ga0501042_0018478 3300049578 Bacteria 4826
116 Ga0501043_0001393 3300049579 Bacteria 21126
117 Ga0501043_0002777 3300049579 Bacteria 14637
118 Ga0501043_0003531 3300049579 Bacteria 12852
119 Ga0501043_0033515 3300049579 Bacteria 4041
120 Ga0501043_0094603 3300049579 Bacteria 2349
121 Ga0501046_0000982 3300049580 Bacteria 27848
122 Ga0501046_0033516 3300049580 Bacteria 4148
123 Ga0501047_0000183 3300049581 Bacteria 76122
124 Ga0501047_0000427 3300049581 Bacteria 47178
125 Ga0501047_0001566 3300049581 Bacteria 22383
126 Ga0501047_0004902 3300049581 Bacteria 12573
127 Ga0501047_0007667 3300049581 Bacteria 10166
128 Ga0501047_0008016 3300049581 Bacteria 9962
129 Ga0501047_0012143 3300049581 Bacteria 8152
130 Ga0501047_0025423 3300049581 Bacteria 5692
131 Ga0501047_0105933 3300049581 Bacteria 2692
132 Ga0501047_0132667 3300049581 Bacteria 2371
133 Ga0501047_0162934 3300049581 Bacteria 2101
134 Ga0501048_0004443 3300049582 Bacteria 10686
135 Ga0501048_0022343 3300049582 Bacteria 4628
136 Ga0501048_0038954 3300049582 Bacteria 3410
137 Ga0501048_0065821 3300049582 Bacteria 2562
138 Ga0501048_0097639 3300049582 Bacteria 2072
139 Ga0501067_0031508 3300049583 Bacteria 2942
140 Ga0501069_0001510 3300049585 Bacteria 11509
141 Ga0501070_0004941 3300049586 Bacteria 11379
142 Ga0501070_0005192 3300049586 Bacteria 11094
143 Ga0501070_0022684 3300049586 Bacteria 5257
144 Ga0501070_0025495 3300049586 Bacteria 4959
145 Ga0501073_0008894 3300049589 Bacteria 7424
146 Ga0501074_0006243 3300049590 Bacteria 8606
147 Ga0501074_0011320 3300049590 Bacteria 6485
148 Ga0501074_0014720 3300049590 Bacteria 5689
149 Ga0501074_0068266 3300049590 Bacteria 2556
150 Ga0501079_0027820 3300049741 Bacteria 4337
151 Ga0501080_0017591 3300049742 Bacteria 6610
152 Ga0501080_0040407 3300049742 Bacteria 4350
153 Ga0501080_0187365 3300049742 Bacteria 1902
154 Ga0501035_0000190 3300049822 Bacteria 75480
155 Ga0501035_0002671 3300049822 Bacteria 17350
156 Ga0501035_0004419 3300049822 Bacteria 13346
157 Ga0501035_0005472 3300049822 Bacteria 12001
158 Ga0501035_0006218 3300049822 Bacteria 11236
159 Ga0501035_0009450 3300049822 Bacteria 9066
160 Ga0501035_0010501 3300049822 Bacteria 8579
161 Ga0501035_0024999 3300049822 Bacteria 5477
162 Ga0501035_0050017 3300049822 Bacteria 3746
163 Ga0501035_0064469 3300049822 Bacteria 3256
164 Ga0501044_0000199 3300049823 Bacteria 75844
165 Ga0501044_0003446 3300049823 Bacteria 17813
166 Ga0501044_0003925 3300049823 Bacteria 16676
167 Ga0501044_0010451 3300049823 Bacteria 10073
168 Ga0501044_0023889 3300049823 Bacteria 6497
169 Ga0501044_0041764 3300049823 Bacteria 4773
170 Ga0501044_0063066 3300049823 Bacteria 3787
171 Ga0501044_0403719 3300049823 Bacteria 1279
172 Ga0501045_0002339 3300049824 Bacteria 12868
173 Ga0501045_0016821 3300049824 Bacteria 5194
174 Ga0501045_0068876 3300049824 Bacteria 2600
175 nmdc:mga09592_91507_c1 3300050508 Bacteria 2599
176 nmdc:mga0qj67_11091_c1 3300050509 Bacteria 6748
177 nmdc:mga0qj67_136869_c1 3300050509 Bacteria 1984
178 nmdc:mga06r32_1861_c1 3300050510 Bacteria 18782
179 nmdc:mga06r32_33744_c1 3300050510 Bacteria 4821
180 nmdc:mga06r32_5079_c1 3300050510 Bacteria 11848
181 Ga0495619_0039154 3300053085 Unclassified 3094
182 Ga0500568_0013088 3300053139 Unclassified 3794
183 Ga0501084_0010332 3300054114 Bacteria 7724
184 Ga0501084_0131995 3300054114 Bacteria 2102
185 Ga0466962_0003338 3300061719 Bacteria 7627
186 Ga0466962_0064495 3300061719 Bacteria 1749
187 8025532061 8025530807 Bacteria 8495698
188 2508671948 2508501039 Bacteria 9978592
189 2528202240 2527291627 Bacteria 5309833
190 2528212843 2527291629 Bacteria 5267418
191 2546948509 2546825537 Bacteria 5389291
192 2579749513 2576861822 Bacteria 5004595
193 2579857245 2579778521 Bacteria 7624758
194 2616906316 2616644941 Bacteria 8510691
195 2619856782 2619618881 Bacteria 7521104
196 2620353160 2619619003 Bacteria 7619552
197 2643899502 2643221578 Bacteria 9213798
198 2643901322 2643221578 Bacteria 9213798
199 2644407466 2643221673 Bacteria 9196637
200 2644410038 2643221673 Bacteria 9196637
201 2644628449 2643221714 Bacteria 9015452
202 2671834853 2671180195 Bacteria 9757215
203 2676479260 2675903058 Bacteria 6822861
204 2686540512 2684623035 Bacteria 8032739
205 2686542316 2684623036 Bacteria 5199090
206 2710606301 2710264753 Bacteria 5455564
207 2753074777 2751185734 Bacteria 8863695
208 2768644158 2767802112 Bacteria 6465194
209 2774853009 2773857922 Bacteria 9757215
210 2774865614 2773857924 Bacteria 5256821
211 2809591503 2808606522 Bacteria 9488490
212 2819745780 2818991472 Bacteria 10089953
213 2827629482 2827628540 Bacteria 6858585
214 2855689042 2855683550 Bacteria 7134265
215 2861527815 2861520306 Bacteria 8348283
216 2862291804 2862290372 Bacteria 7471434
217 2862513821 2862507626 Bacteria 9425308
218 2867348080 2867346516 Bacteria 7608576
219 2867372551 2867369537 Bacteria 6501581
220 2875395292 2875391855 Bacteria 7600475
221 2891560367 2891554331 Bacteria 8812224
222 2893685511 2893684298 Bacteria 2897960
223 2895890999 2895880812 Bacteria 11255272
224 2899373512 2899370129 Bacteria 6781179
225 2919397593 2919395869 Bacteria 3704152
226 2954680419 2954673503 Bacteria 9685905
227 2954683733 2954682443 Bacteria 9862841
228 2954719950 2954711539 Bacteria 10867210
229 2954729986 2954721474 Bacteria 10456478
230 2954750760 2954749733 Bacteria 10366972
231 2990047369 2990044586 Bacteria 6603797
232 2990094322 2990088156 Bacteria 6657676
233 3006322093 3006321560 Bacteria 8247479
234 3006324577 3006321560 Bacteria 8247479
235 637877350 637000116 Bacteria 5433628
236 8002777563 8002775197 Bacteria 10728764
237 8003859248 8003856774 Bacteria 7675274
238 8008489009 8008485437 Bacteria 7198341
239 8025528492 8025524527 Bacteria 7197316
240 8047900192 8047893842 Bacteria 11723082
241 8048377135 8048369669 Bacteria 11666822
242 8048386194 8048379754 Bacteria 11877923
243 8048413169 8048406513 Bacteria 8936924
244 8054166134 8054160619 Bacteria 7783213
245 8054916365 8054913762 Bacteria 7713009
246 8056060426 8056060235 Bacteria 7259403
247 8056448127 8056447290 Bacteria 7680491
248 8057571000 8057568493 Bacteria 7221719
249 Ga0070714_100000116
250 Ga0070710_10011326
251 Ga0070708_100115744
252 Ga0070663_100037574
253 Ga0068855_100183886
254 Ga0081455_10000765
255 Ga0081538_10048564
256 Ga0075430_100006965
257 Ga0075430_100076916
258 Ga0075431_100002440
259 Ga0075431_100005931
260 Ga0075431_100134860
261 Ga0075429_100331762
262 Ga0105247_10000272
263 Ga0105247_10000337
264 Ga0105237_10004598
265 Ga0105237_10012037
266 Ga0157371_10001386
267 Ga0163163_10010697
268 Ga0157376_10042562
269 Ga0207692_10007754
270 Ga0207710_10000225
271 Ga0207710_10000256
272 Ga0207671_10002011
273 Ga0207671_10003389
274 Ga0207664_10000002
275 Ga0207678_10025950
276 Ga0307517_10012345
277 Ga0307515_10044387
278 Ga0307511_10005239
279 Ga0307512_10005146
280 Ga0316579_10000786
281 Ga0307416_100016438
282 Ga0307510_10038292
283 Ga0395899_0043090
284 Ga0395900_0015901
285 Ga0395900_0018795
286 Ga0395898_0000246
287 Ga0395898_0052221
288 Ga0436364_0580564
289 Ga0395901_0026453
290 Ga0395901_0088779
291 Ga0400484_31096
292 Ga0400490_52464
293 Ga0400486_28950
294 Ga0400483_113735
295 Ga0400483_195596
296 Ga0451853_0841053
297 Ga0450894_003790
298 Ga0450896_003035
299 Ga0450898_003899
300 Ga0466969_0029910
301 Ga0466961_0077136
302 Ga0453684_0034901
303 Ga0466959_0020974
304 Ga0466959_0095321
305 Ga0495651_0001796
306 Ga0495662_0013545
307 Ga0495666_0029942
308 Ga0495652_0015713
309 Ga0495635_0027391
310 Ga0495613_0106538
311 Ga0495604_0040815
312 Ga0495687_004258
313 Ga0496119_0009750
314 Ga0496120_0001314
315 Ga0496120_0008757
316 Ga0496125_0000047
317 Ga0501031_0000020
318 Ga0501031_0011222
319 Ga0501032_0016640
320 Ga0501032_0016834
321 Ga0501032_0034695
322 Ga0501032_0036919
323 Ga0501032_0037826
324 Ga0501032_0051472
325 Ga0501032_0115235
326 Ga0501033_0003300
327 Ga0501033_0014294
328 Ga0501033_0014823
329 Ga0501033_0030378
330 Ga0501033_0034320
331 Ga0501033_0035593
332 Ga0501034_0006343
333 Ga0501034_0009158
334 Ga0501034_0012667
335 Ga0501034_0030683
336 Ga0501034_0036883
337 Ga0501034_0041054
338 Ga0501036_0001273
339 Ga0501036_0002980
340 Ga0501036_0004368
341 Ga0501036_0015797
342 Ga0501036_0056148
343 Ga0501037_0001822
344 Ga0501037_0063086
345 Ga0501037_0088550
346 Ga0501037_0090085
347 Ga0501037_0113989
348 Ga0501038_0005244
349 Ga0501038_0011499
350 Ga0501038_0026944
351 Ga0501038_0031627
352 Ga0501038_0036967
353 Ga0501038_0037076
354 Ga0501038_0052193
355 Ga0501038_0058699
356 Ga0501039_0037667
357 Ga0501039_0046399
358 Ga0501039_0309738
359 Ga0501040_0005922
360 Ga0501040_0146434
361 Ga0501041_0056207
362 Ga0501042_0010000
363 Ga0501042_0018478
364 Ga0501043_0001393
365 Ga0501043_0002777
366 Ga0501043_0003531
367 Ga0501043_0033515
368 Ga0501043_0094603
369 Ga0501046_0000982
370 Ga0501046_0033516
371 Ga0501047_0000183
372 Ga0501047_0000427
373 Ga0501047_0001566
374 Ga0501047_0004902
375 Ga0501047_0007667
376 Ga0501047_0008016
377 Ga0501047_0012143
378 Ga0501047_0025423
379 Ga0501047_0105933
380 Ga0501047_0132667
381 Ga0501047_0162934
382 Ga0501048_0004443
383 Ga0501048_0022343
384 Ga0501048_0038954
385 Ga0501048_0065821
386 Ga0501048_0097639
387 Ga0501067_0031508
388 Ga0501069_0001510
389 Ga0501070_0004941
390 Ga0501070_0005192
391 Ga0501070_0022684
392 Ga0501070_0025495
393 Ga0501073_0008894
394 Ga0501074_0006243
395 Ga0501074_0011320
396 Ga0501074_0014720
397 Ga0501074_0068266
398 Ga0501079_0027820
399 Ga0501080_0017591
400 Ga0501080_0040407
401 Ga0501080_0187365
402 Ga0501035_0000190
403 Ga0501035_0002671
404 Ga0501035_0004419
405 Ga0501035_0005472
406 Ga0501035_0006218
407 Ga0501035_0009450
408 Ga0501035_0010501
409 Ga0501035_0024999
410 Ga0501035_0050017
411 Ga0501035_0064469
412 Ga0501044_0000199
413 Ga0501044_0003446
414 Ga0501044_0003925
415 Ga0501044_0010451
416 Ga0501044_0023889
417 Ga0501044_0041764
418 Ga0501044_0063066
419 Ga0501044_0403719
420 Ga0501045_0002339
421 Ga0501045_0016821
422 Ga0501045_0068876
423 nmdc:mga09592_91507_c1
424 nmdc:mga0qj67_11091_c1
425 nmdc:mga0qj67_136869_c1
426 nmdc:mga06r32_1861_c1
427 nmdc:mga06r32_33744_c1
428 nmdc:mga06r32_5079_c1
429 Ga0495619_0039154
430 Ga0500568_0013088
431 Ga0501084_0010332
432 Ga0501084_0131995
433 Ga0466962_0003338
434 Ga0466962_0064495
435 8025532061
436 2508671948
437 2528202240
438 2528212843
439 2546948509
440 2579749513
441 2579857245
442 2616906316
443 2619856782
444 2620353160
445 2643899502
446 2643901322
447 2644407466
448 2644410038
449 2644628449
450 2671834853
451 2676479260
452 2686540512
453 2686542316
454 2710606301
455 2753074777
456 2768644158
457 2774853009
458 2774865614
459 2809591503
460 2819745780
461 2827629482
462 2855689042
463 2861527815
464 2862291804
465 2862513821
466 2867348080
467 2867372551
468 2875395292
469 2891560367
470 2893685511
471 2895890999
472 2899373512
473 2919397593
474 2954680419
475 2954683733
476 2954719950
477 2954729986
478 2954750760
479 2990047369
480 2990094322
481 3006322093
482 3006324577
483 637877350
484 8002777563
485 8003859248
486 8008489009
487 8025528492
488 8047900192
489 8048377135
490 8048386194
491 8048413169
492 8054166134
493 8054916365
494 8056060426
495 8056448127
496 8057571000

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09344

Cas_CT1975

CT1975-like protein

2

396

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5u0a-assembly1.cif.gz_D crispr rna-guided surveillance complex 0.8958 5 367
5u0a-assembly1.cif.gz_D crispr rna-guided surveillance complex 0.8859 5 367
4qyz-assembly1.cif.gz_I crystal structure of a crispr rna-guided surveillance complex, cascade, bound to a ssdna target 0.8353 1 365
4u7u-assembly2.cif.gz_F crystal structure of rna-guided immune cascade complex from e.coli 0.8213 5 367
4qyz-assembly1.cif.gz_I crystal structure of a crispr rna-guided surveillance complex, cascade, bound to a ssdna target 0.8201 1 365
ID Description Score Start End Superfamily
af_Q9SVD0_551_776_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.4855 53 116 3.40.50.300
3vkhB10 Mainly Alpha;Up-down Bundle;Histone Acetyltransferase; Chain A; 0.457 69 156 1.20.920.30
af_P9WJX1_217_406_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.4492 41 99 1.20.1250.20
af_P38788_396_537_2.60.34.10 Mainly Beta;Sandwich;Substrate Binding Domain Of DNAk; Chain A, domain 1;Substrate Binding Domain Of DNAk; Chain A, domain 1 0.4314 182 238 2.60.34.10
af_P39077_13_528_1.10.560.10 Mainly Alpha;Orthogonal Bundle;GROEL; domain 1;GroEL-like equatorial domain 0.4206 40 117 1.10.560.10
ID Description Score Start End GO Terms
AF-A0A1B1ZJB8-F1-model_v4 Type I-E CRISPR-associated protein Cas7/Cse4/CasC 0.9544 153 372
AF-A0A7K1J782-F1-model_v4 Type I-E CRISPR-associated protein Cas7/Cse4/CasC 0.9443 266 372
AF-A0A2P8ALW2-F1-model_v4 CRISPR system Cascade subunit CasC 0.9415 220 375
AF-A0A8A9ALJ6-F1-model_v4 deleted 0.9396 241 372
AF-A0A1C5ATU7-F1-model_v4 CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 0.9378 176 375

Map