F355700

General Info

Members Datasets Scaffolds Average Seq Length
243 210 173 460

Family's Representative Sequence

Representative Sequence 3300027876|Ga0209974_10004658|Ga0209974_100046582
Length 502
Sequence MRAHHHCEPEGLPGWPAAQDAQAPQAASGKRAARVDEARHHGHRQGTYPPLPPLLDDAVAQLVHGSPALLTELVEQYGSPLNLVWPHLLRNNTRKLTDVLLSQGVNHAIFYGAKVNKSQAFLHASVQEGIGVDVSSLYEAADALAAGAQPARLCATGPAKTAAFLQMLVAQGSLISIDSREELHDLEQCLHTGTSGHPARVLLRYRPDACASSRFGMGAEELRDCLGRLAGRQAPITVEGFHFHLGGYAVPPRVQAVRELLPWVREARRHGLALSMLDIGGGLPIRYVDSTAYEMFLAAQDGGHYRHGKVPASFYPYGGPADASTWLAQLLVSPCADGLNVAESLRTAGLTLAIEPGRSLVDQAAISVFRVTRTKPLAPGRCVVFVEGSSFSACETWFGSEFLVDPLLVPADTGQPLGAMPQPCQAYIAGHSCLDDDVLTHRWIEFARTPQPGDLLVYANTAGYQMDLLENEFHRHPMPRRIAVTRTAAGGMDFSPDDNRPE

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
3 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
4 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
5 2513237104 Bradyrhizobium sp. EC3.3 Isolate Nodule
6 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
7 2515154123 Trinickia symbiotica JPY347 Isolate Nodule
8 2516143018 Ensifer sp. BR816 Isolate Nodule
9 2519899620 Rhizobium sp. Pop5 Isolate Nodule
10 2547132374 Acidovorax radicis N35 Isolate Unclassified
11 2599185303 Pseudomonas sp. NFACC42-2 Isolate Rhizoplane
12 2600255318 Pseudomonas putida NFIX47 Isolate Rhizoplane
13 2603880185 Pseudomonas sp. NFIX46 Isolate Rhizoplane
14 2603880199 Pseudomonas sp. NFIX49 Isolate Rhizoplane
15 2623620443 Pseudomonas sp. DR 5-09 Isolate Unclassified
16 2643221717 Acidovorax sp. Root267 Isolate Unclassified
17 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
18 2713897149 Pseudomonas fluorescens SF4c Isolate Rhizosphere
19 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
20 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
21 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
22 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
23 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
24 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
25 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
26 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
27 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
28 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
29 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
30 2851182111 Bosea sp. Tri-44 Isolate Nodule
31 2855195626 Pectobacterium atrosepticum SS26 Isolate Stem Tuber
32 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
33 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
34 2858466076 Pectobacterium polaris SS28 Isolate Stem Tuber
35 2871272651 Pectobacterium carotovorum SS96 Isolate Stem Tuber
36 2876808645 Bradyrhizobium algeriense RST89 Isolate Unclassified
37 2878029506 Pseudomonas fluorescens DR397 Isolate Rhizosphere
38 2879110137 Bradyrhizobium algeriense RST91 Isolate Nodule
39 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
40 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
41 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
42 2919063839 Pseudomonas pharyngis 1098 Isolate Rhizosphere
43 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
44 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
45 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
46 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
47 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
48 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
49 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
50 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
51 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
52 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
53 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
54 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
55 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
56 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
57 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
58 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
59 2969304461 Pseudomonas sp. R84 Isolate Rhizosphere
60 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
61 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
62 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
63 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
64 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
65 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
66 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
67 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
68 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
69 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
70 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
71 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
72 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
73 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
74 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
75 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
76 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
77 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
78 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
79 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
80 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
81 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
82 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
83 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
84 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
85 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
86 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
87 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
88 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
89 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
90 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
91 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
92 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
93 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
94 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
95 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
96 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
97 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
98 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
99 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
100 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
101 3300012498 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410 Metagenome Rhizosphere
102 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
103 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
104 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
105 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
106 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
107 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
108 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
109 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
110 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
111 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
112 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
113 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
114 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
115 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
116 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
117 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
118 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
119 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
120 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
121 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
122 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
123 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
124 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
125 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
126 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
127 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
128 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
130 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
131 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
132 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
133 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
135 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
136 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
137 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
138 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
139 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
140 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
141 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
142 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
143 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
144 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
145 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
146 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
147 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
148 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
149 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
150 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
151 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
152 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
153 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
154 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
155 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
156 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
157 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
158 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
159 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
160 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
161 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
162 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
163 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
164 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
165 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
166 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
167 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
168 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
169 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
170 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
171 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
172 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
173 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
174 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
175 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
176 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
177 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
178 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
179 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
180 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
181 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
182 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
183 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
184 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
185 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
186 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
187 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
188 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
189 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
190 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
191 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
192 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
193 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
194 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
195 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
196 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
197 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
198 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
199 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
200 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
201 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
202 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
203 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
204 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
205 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
206 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
207 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
208 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
209 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
210 8056569372 Pseudomonas serboccidentalis IT-P374 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 71.19
Metatranscriptomes 0
Isolates 28.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.29
Nodule 20.99
Rhizoplane 1.65
Rhizosphere 46.5
Stem 0
Stem Tuber 1.23
Unclassified 19.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1964002 2162886007 Bacteria 4237
2 JGI25155J39150_1000005 3300002704 Bacteria 261712
3 JGI25156J39149_1000006 3300002705 Bacteria 261778
4 JGI25154J39366_1000015 3300002738 Bacteria 261778
5 JGI25157J39369_1000016 3300002741 Bacteria 192349
6 JGI25152J39213_1000854 3300002773 Bacteria 15089
7 JGI25150J39212_1003684 3300002774 Bacteria 3548
8 JGI25153J46596_10001281 3300003215 Bacteria 15089
9 rootH1_10003517 3300003323 Bacteria 14749
10 Ga0055526_1007548 3300003771 Bacteria 5622
11 Ga0055524_1000230 3300003775 Bacteria 59566
12 Ga0055528_1000040 3300003790 Bacteria 112553
13 Ga0065165_1000026 3300005262 Bacteria 233376
14 Ga0065704_10077435 3300005289 Bacteria 4739
15 Ga0065712_10069007 3300005290 Bacteria 8292
16 Ga0070658_10008522 3300005327 Bacteria 8243
17 Ga0068868_100031810 3300005338 Bacteria 4057
18 Ga0070689_100077309 3300005340 Bacteria 2608
19 Ga0070659_100009714 3300005366 Bacteria 7069
20 Ga0070698_100208017 3300005471 Bacteria 1892
21 Ga0068855_100146336 3300005563 Bacteria 2689
22 Ga0068859_100017923 3300005617 Bacteria 7117
23 Ga0068860_100159587 3300005843 Bacteria 2174
24 Ga0068862_100007697 3300005844 Bacteria 8913
25 Ga0081455_10046115 3300005937 Bacteria 3785
26 Ga0075367_10049555 3300006178 Bacteria 2476
27 Ga0075369_10005005 3300006186 Bacteria 4933
28 Ga0097620_100017923 3300006931 Bacteria 7117
29 Ga0079104_1000054 3300006946 Bacteria 168000
30 Ga0105251_10006732 3300009011 Bacteria 7254
31 Ga0105244_10011083 3300009036 Bacteria 5430
32 Ga0105250_10000226 3300009092 Bacteria 47057
33 Ga0105250_10000738 3300009092 Bacteria 19952
34 Ga0105240_10002251 3300009093 Bacteria 31332
35 Ga0105240_10192732 3300009093 Bacteria 2395
36 Ga0123341_1027765 3300009765 Bacteria 4413
37 Ga0123342_1021972 3300009766 Bacteria 4401
38 Ga0105239_10016383 3300010375 Bacteria 8198
39 Ga0157345_1000013 3300012498 Bacteria 51102
40 Ga0157371_10031147 3300013102 Bacteria 3843
41 Ga0157371_10147792 3300013102 Bacteria 1675
42 Ga0157370_10056484 3300013104 Bacteria 3736
43 Ga0157369_10000113 3300013105 Bacteria 113723
44 Ga0157369_10001927 3300013105 Bacteria 25012
45 Ga0157374_10007747 3300013296 Bacteria 9170
46 Ga0163162_10016479 3300013306 Bacteria 7220
47 Ga0182006_1001877 3300015261 Bacteria 12023
48 Ga0163161_10049655 3300017792 Bacteria 3033
49 Ga0214544_1000570 3300021320 Bacteria 69224
50 Ga0214542_1010147 3300021321 Bacteria 13974
51 Ga0214543_1010279 3300021327 Bacteria 13974
52 Ga0209435_100010 3300025206 Bacteria 475373
53 Ga0207425_1000561 3300025245 Bacteria 21968
54 Ga0209646_1000001 3300025246 Bacteria 3092932
55 Ga0209026_1000001 3300025250 Bacteria 1228671
56 Ga0209759_1000001 3300025256 Bacteria 2799452
57 Ga0209759_1008621 3300025256 Bacteria 3160
58 Ga0209129_1001167 3300025258 Bacteria 15141
59 Ga0209673_1000222 3300025273 Bacteria 112605
60 Ga0209130_1000150 3300025284 Bacteria 108274
61 Ga0209675_1004863 3300025291 Bacteria 5814
62 Ga0209025_1028944 3300025294 Bacteria 2697
63 Ga0209564_1000258 3300025295 Bacteria 112586
64 Ga0209758_1000348 3300025297 Bacteria 84207
65 Ga0209256_1000202 3300025299 Bacteria 112605
66 Ga0207426_1003521 3300025302 Bacteria 8402
67 Ga0207696_1000207 3300025711 Bacteria 89204
68 Ga0207696_1000879 3300025711 Bacteria 18733
69 Ga0207713_1000131 3300025735 Bacteria 114570
70 Ga0207647_10000345 3300025904 Bacteria 37542
71 Ga0207657_10003095 3300025919 Bacteria 17792
72 Ga0207690_10001616 3300025932 Bacteria 14038
73 Ga0207689_10001971 3300025942 Bacteria 19394
74 Ga0207667_10041138 3300025949 Bacteria 4917
75 Ga0207668_10061366 3300025972 Bacteria 2644
76 Ga0207678_10012159 3300026067 Bacteria 7560
77 Ga0209281_1000040 3300027111 Bacteria 353441
78 Ga0209974_10004658 3300027876 Bacteria 4878
79 Ga0207428_10020653 3300027907 Bacteria 5589
80 Ga0268266_10115785 3300028379 Bacteria 2380
81 Ga0268264_10046293 3300028381 Bacteria 3613
82 Ga0265337_1012968 3300028556 Bacteria 2815
83 Ga0265326_10000967 3300028558 Bacteria 10387
84 Ga0265319_1001144 3300028563 Bacteria 16483
85 Ga0265334_10001202 3300028573 Bacteria 12660
86 Ga0265318_10002579 3300028577 Bacteria 9601
87 Ga0265323_10000037 3300028653 Bacteria 71088
88 Ga0265322_10005921 3300028654 Bacteria 3603
89 Ga0265336_10000090 3300028666 Bacteria 69623
90 Ga0265338_10000024 3300028800 Bacteria 297778
91 Ga0265324_10000303 3300029957 Bacteria 36613
92 Ga0307408_100000131 3300031548 Bacteria 83295
93 Ga0307516_10138684 3300031730 Bacteria 2204
94 Ga0307406_10000191 3300031901 Bacteria 36437
95 Ga0395900_0000260 3300037418 Bacteria 82477
96 Ga0395900_0037899 3300037418 Bacteria 4970
97 Ga0395900_0060353 3300037418 Bacteria 3903
98 Ga0395898_0000917 3300037466 Bacteria 47173
99 Ga0395901_0000004 3300038443 Bacteria 657361
100 Ga0395901_0000118 3300038443 Bacteria 105036
101 Ga0395901_0017893 3300038443 Bacteria 7233
102 Ga0237819_00555 3300038705 Bacteria 12544
103 Ga0439452_000123 3300042010 Bacteria 59209
104 Ga0439456_006442 3300042013 Bacteria 2398
105 Ga0450905_000009 3300042142 Bacteria 20983
106 Ga0466969_0027999 3300044656 Bacteria 2882
107 Ga0466972_0016898 3300044658 Bacteria 3650
108 Ga0466966_0013254 3300044684 Bacteria 5459
109 Ga0466966_0016447 3300044684 Bacteria 4887
110 Ga0466961_0006295 3300044693 Bacteria 7539
111 Ga0466963_0011818 3300044694 Bacteria 5326
112 Ga0466968_0003409 3300044735 Bacteria 5877
113 Ga0466959_0023385 3300045049 Bacteria 4572
114 Ga0466958_0033737 3300045836 Bacteria 3050
115 Ga0495617_001380 3300046452 Bacteria 10705
116 Ga0495591_000518 3300046458 Bacteria 30191
117 Ga0495638_0004811 3300046460 Bacteria 10174
118 Ga0495607_0007327 3300046501 Bacteria 7647
119 Ga0495606_0001445 3300046507 Bacteria 31851
120 Ga0495631_0000066 3300046518 Bacteria 65068
121 Ga0495631_0001112 3300046518 Bacteria 16696
122 Ga0495637_0004509 3300046520 Bacteria 7206
123 Ga0495637_0005700 3300046520 Bacteria 6316
124 Ga0495648_0000516 3300046524 Bacteria 41670
125 Ga0495648_0005699 3300046524 Bacteria 10297
126 Ga0495654_0004897 3300046530 Bacteria 7879
127 Ga0495597_0000233 3300046542 Bacteria 50164
128 Ga0495633_0000364 3300046558 Bacteria 48852
129 Ga0495633_0051405 3300046558 Bacteria 1942
130 Ga0495633_0064180 3300046558 Bacteria 1717
131 Ga0495611_0013261 3300046648 Bacteria 3506
132 Ga0495625_0074716 3300046660 Bacteria 2373
133 Ga0495661_0000655 3300046665 Bacteria 34844
134 Ga0495661_0022367 3300046665 Bacteria 4113
135 Ga0495613_0001118 3300046689 Bacteria 20425
136 Ga0495671_0000990 3300046692 Bacteria 19821
137 Ga0495679_022258 3300047446 Bacteria 2172
138 Ga0495673_0002911 3300047469 Bacteria 11608
139 Ga0495681_0014643 3300047470 Bacteria 4482
140 Ga0495626_0000937 3300048091 Bacteria 25387
141 Ga0495626_0012800 3300048091 Bacteria 4380
142 Ga0496116_0058840 3300048919 Bacteria 2503
143 Ga0496117_0000354 3300048920 Bacteria 80757
144 Ga0496117_0002934 3300048920 Bacteria 20642
145 Ga0496117_0015852 3300048920 Bacteria 6393
146 Ga0496118_0001422 3300048921 Bacteria 36121
147 Ga0496118_0002259 3300048921 Bacteria 26365
148 Ga0496118_0015710 3300048921 Bacteria 6990
149 Ga0496118_0016259 3300048921 Bacteria 6834
150 Ga0496119_0012740 3300048922 Bacteria 6793
151 Ga0496120_0010444 3300048923 Bacteria 6479
152 Ga0496121_0003758 3300048924 Bacteria 21258
153 Ga0496121_0010950 3300048924 Bacteria 10129
154 Ga0496121_0010984 3300048924 Bacteria 10109
155 Ga0496121_0014001 3300048924 Bacteria 8565
156 Ga0496122_0000072 3300048925 Bacteria 222436
157 Ga0496122_0049503 3300048925 Bacteria 3216
158 Ga0496123_0000035 3300048926 Bacteria 267288
159 Ga0496123_0024863 3300048926 Bacteria 4534
160 Ga0496124_0003018 3300048927 Bacteria 21033
161 Ga0496124_0044123 3300048927 Bacteria 3828
162 Ga0496124_0060995 3300048927 Bacteria 3162
163 Ga0496125_0008191 3300048928 Bacteria 10999
164 Ga0496125_0148399 3300048928 Bacteria 1616
165 Ga0496126_0000929 3300048929 Bacteria 50582
166 Ga0501206_000897 3300049653 Bacteria 3675
167 nmdc:mga0sz30_18929_c1 3300050516 Bacteria 2760
168 Ga0500572_000117 3300053111 Bacteria 26671
169 Ga0500618_001993 3300053125 Bacteria 8336
170 Ga0500621_051117 3300053126 Bacteria 1672
171 Ga0500634_0000176 3300053161 Bacteria 21112
172 Ga0500636_0005715 3300053177 Bacteria 7111
173 Ga0466962_0002153 3300061719 Bacteria 9309

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2751185821 2753463413 373
2 iso_pu_bacteria 2876808645 2876814718 386
3 3300046558 Ga0495633_0064180 Ga0495633_0064180_62_1351 409
4 3300048925 Ga0496122_0000072 Ga0496122_0000072_124634_125965 418
5 3300048926 Ga0496123_0000035 Ga0496123_0000035_169486_170817 418
6 iso_pu_bacteria 2903768456 2903768516 422
7 3300053125 Ga0500618_001993 Ga0500618_001993_6442_7818 430
8 3300053177 Ga0500636_0005715 Ga0500636_0005715_3537_4913 430
9 3300048921 Ga0496118_0001422 Ga0496118_0001422_11395_12759 433
10 3300003323 rootH1_10003517 rootH1_1000351711 436
11 3300037418 Ga0395900_0037899 Ga0395900_0037899_339_1691 438
12 3300038443 Ga0395901_0000118 Ga0395901_0000118_56280_57632 438
13 iso_pu_bacteria 2818991448 2819612050 441
14 iso_pu_bacteria 2838029111 2838030356 441
15 iso_pu_bacteria 2842475841 2842477364 441
16 iso_pu_bacteria 2842502639 2842504161 441
17 iso_pu_bacteria 8005645114 8005647646 441
18 iso_pu_bacteria 2513237104 2513718882 442
19 iso_pu_bacteria 2519899620 2520375435 442
20 3300003771 Ga0055526_1007548 Ga0055526_10075484 443
21 3300003775 Ga0055524_1000230 Ga0055524_100023039 443
22 3300003790 Ga0055528_1000040 Ga0055528_100004025 443
23 3300005937 Ga0081455_10046115 Ga0081455_100461152 443
24 3300006178 Ga0075367_10049555 Ga0075367_100495554 443
25 3300021320 Ga0214544_1000570 Ga0214544_100057058 443
26 3300021321 Ga0214542_1010147 Ga0214542_101014716 443
27 3300021327 Ga0214543_1010279 Ga0214543_10102793 443
28 3300025273 Ga0209673_1000222 Ga0209673_100022277 443
29 3300025295 Ga0209564_1000258 Ga0209564_100025877 443
30 3300025299 Ga0209256_1000202 Ga0209256_100020277 443
31 3300026067 Ga0207678_10012159 Ga0207678_100121592 443
32 3300048928 Ga0496125_0148399 Ga0496125_0148399_185_1576 443
33 3300049653 Ga0501206_000897 Ga0501206_000897_599_1972 443
34 iso_pu_bacteria 2510917028 2511184414 443
35 iso_pu_bacteria 2512047086 2512534928 443
36 iso_pu_bacteria 2513237098 2513672639 443
37 iso_pu_bacteria 2513237161 2514015849 443
38 iso_pu_bacteria 2516143018 2516208477 443
39 iso_pu_bacteria 2751185821 2753459201 443
40 iso_pu_bacteria 2791355091 2792623917 443
41 iso_pu_bacteria 2791355092 2792629578 443
42 iso_pu_bacteria 2791355094 2792643263 443
43 iso_pu_bacteria 2838661181 2838661954 443
44 iso_pu_bacteria 2855872281 2855876883 443
45 iso_pu_bacteria 2856342000 2856342184 443
46 iso_pu_bacteria 2915993759 2915999777 443
47 iso_pu_bacteria 2924158325 2924164710 443
48 iso_pu_bacteria 2933016740 2933019074 443
49 iso_pu_bacteria 2937063883 2937071115 443
50 iso_pu_bacteria 2937091812 2937092216 443
51 iso_pu_bacteria 2937098957 2937099476 443
52 iso_pu_bacteria 2957430029 2957436791 443
53 iso_pu_bacteria 2957498199 2957498770 443
54 iso_pu_bacteria 2960637947 2960640125 443
55 iso_pu_bacteria 2960652885 2960653118 443
56 iso_pu_bacteria 2964628898 2964635896 443
57 iso_pu_bacteria 2964656573 2964658820 443
58 iso_pu_bacteria 2964670856 2964674433 443
59 iso_pu_bacteria 2964719344 2964721566 443
60 iso_pu_bacteria 2967678726 2967686086 443
61 iso_pu_bacteria 2967714385 2967720172 443
62 iso_pu_bacteria 2970033650 2970040862 443
63 iso_pu_bacteria 2970068827 2970076007 443
64 iso_pu_bacteria 2970156795 2970164074 443
65 iso_pu_bacteria 2970184632 2970191106 443
66 iso_pu_bacteria 2977551784 2977558165 443
67 iso_pu_bacteria 643692032 643692392 443
68 iso_pu_bacteria 643692032 643822222 443
69 3300002704 JGI25155J39150_1000005 JGI25155J39150_1000005131 444
70 3300002705 JGI25156J39149_1000006 JGI25156J39149_1000006131 444
71 3300002738 JGI25154J39366_1000015 JGI25154J39366_1000015115 444
72 3300002741 JGI25157J39369_1000016 JGI25157J39369_100001649 444
73 3300002773 JGI25152J39213_1000854 JGI25152J39213_100085412 444
74 3300002774 JGI25150J39212_1003684 JGI25150J39212_10036842 444
75 3300003215 JGI25153J46596_10001281 JGI25153J46596_1000128112 444
76 3300005338 Ga0068868_100031810 Ga0068868_1000318103 444
77 3300005340 Ga0070689_100077309 Ga0070689_1000773092 444
78 3300005471 Ga0070698_100208017 Ga0070698_1002080172 444
79 3300005617 Ga0068859_100017923 Ga0068859_1000179234 444
80 3300005843 Ga0068860_100159587 Ga0068860_1001595872 444
81 3300005844 Ga0068862_100007697 Ga0068862_1000076976 444
82 3300006186 Ga0075369_10005005 Ga0075369_100050053 444
83 3300006931 Ga0097620_100017923 Ga0097620_1000179234 444
84 3300009765 Ga0123341_1027765 Ga0123341_10277652 444
85 3300009766 Ga0123342_1021972 Ga0123342_10219723 444
86 3300025206 Ga0209435_100010 Ga0209435_100010142 444
87 3300025245 Ga0207425_1000561 Ga0207425_10005617 444
88 3300025246 Ga0209646_1000001 Ga0209646_10000012000 444
89 3300025250 Ga0209026_1000001 Ga0209026_1000001655 444
90 3300025256 Ga0209759_1000001 Ga0209759_10000011631 444
91 3300025258 Ga0209129_1001167 Ga0209129_100116711 444
92 3300025294 Ga0209025_1028944 Ga0209025_10289441 444
93 3300025297 Ga0209758_1000348 Ga0209758_100034880 444
94 3300025942 Ga0207689_10001971 Ga0207689_1000197117 444
95 3300025972 Ga0207668_10061366 Ga0207668_100613663 444
96 3300028381 Ga0268264_10046293 Ga0268264_100462934 444
97 3300048924 Ga0496121_0014001 Ga0496121_0014001_3826_5220 444
98 3300048927 Ga0496124_0044123 Ga0496124_0044123_1787_3181 444
99 3300050516 nmdc:mga0sz30_18929_c1 nmdc:mga0sz30_18929_c1_412_1776 444
100 iso_pu_bacteria 2657244999 2657683445 444
101 iso_pu_bacteria 2791355082 2792580188 444
102 iso_pu_bacteria 2802429268 2804754609 444
103 iso_pu_bacteria 2879110137 2879115961 444
104 iso_pu_bacteria 2922386360 2922387840 444
105 iso_pu_bacteria 8049293176 8049298590 444
106 3300028556 Ga0265337_1012968 Ga0265337_10129683 445
107 3300028558 Ga0265326_10000967 Ga0265326_100009676 445
108 3300028563 Ga0265319_1001144 Ga0265319_10011447 445
109 3300028573 Ga0265334_10001202 Ga0265334_100012027 445
110 3300028577 Ga0265318_10002579 Ga0265318_100025793 445
111 3300028653 Ga0265323_10000037 Ga0265323_100000373 445
112 3300028654 Ga0265322_10005921 Ga0265322_100059213 445
113 3300028666 Ga0265336_10000090 Ga0265336_1000009037 445
114 3300028800 Ga0265338_10000024 Ga0265338_1000002436 445
115 3300029957 Ga0265324_10000303 Ga0265324_1000030324 445
116 3300042010 Ga0439452_000123 Ga0439452_000123_18856_20193 445
117 3300042013 Ga0439456_006442 Ga0439456_006442_33_1370 445
118 3300048920 Ga0496117_0000354 Ga0496117_0000354_3291_4628 445
119 3300048921 Ga0496118_0002259 Ga0496118_0002259_12510_13847 445
120 3300048922 Ga0496119_0012740 Ga0496119_0012740_4165_5502 445
121 3300048923 Ga0496120_0010444 Ga0496120_0010444_2319_3656 445
122 3300048927 Ga0496124_0060995 Ga0496124_0060995_939_2276 445
123 iso_pu_bacteria 3003665799 3003670901 445
124 3300044735 Ga0466968_0003409 Ga0466968_0003409_583_1968 446
125 3300046692 Ga0495671_0000990 Ga0495671_0000990_17063_18457 446
126 3300048091 Ga0495626_0012800 Ga0495626_0012800_708_2102 446
127 3300046507 Ga0495606_0001445 Ga0495606_0001445_21298_22692 447
128 3300028379 Ga0268266_10115785 Ga0268266_101157852 449
129 3300046452 Ga0495617_001380 Ga0495617_001380_4971_6365 449
130 3300006946 Ga0079104_1000054 Ga0079104_100005463 450
131 3300027111 Ga0209281_1000040 Ga0209281_100004070 450
132 3300046520 Ga0495637_0005700 Ga0495637_0005700_4348_5742 450
133 iso_pu_bacteria 2889306138 2889309840 450
134 3300031730 Ga0307516_10138684 Ga0307516_101386842 451
135 3300053126 Ga0500621_051117 Ga0500621_051117_86_1480 451
136 3300005366 Ga0070659_100009714 Ga0070659_1000097141 452
137 3300015261 Ga0182006_1001877 Ga0182006_10018772 452
138 3300025932 Ga0207690_10001616 Ga0207690_100016162 452
139 iso_pu_bacteria 2851182111 2851186833 459
140 iso_pu_bacteria 2855195626 2855195933 459
141 iso_pu_bacteria 2858466076 2858466903 459
142 iso_pu_bacteria 2871272651 2871274900 459
143 iso_pu_bacteria 2515154123 2515692273 460
144 iso_pu_bacteria 2599185303 2599949162 460
145 iso_pu_bacteria 2600255318 2601799332 460
146 iso_pu_bacteria 2603880185 2606078436 460
147 iso_pu_bacteria 2603880199 2606130544 460
148 iso_pu_bacteria 2623620443 2624480318 460
149 iso_pu_bacteria 2713897149 2715758647 460
150 iso_pu_bacteria 2878029506 2878032220 460
151 iso_pu_bacteria 2919063839 2919068672 460
152 iso_pu_bacteria 2969304461 2969306926 460
153 iso_pu_bacteria 8056569372 8056573781 460
154 3300031548 Ga0307408_100000131 Ga0307408_10000013167 461
155 3300031901 Ga0307406_10000191 Ga0307406_1000019127 461
156 3300005262 Ga0065165_1000026 Ga0065165_1000026136 462
157 3300009093 Ga0105240_10192732 Ga0105240_101927322 462
158 3300013102 Ga0157371_10147792 Ga0157371_101477922 462
159 3300013105 Ga0157369_10000113 Ga0157369_10000113103 462
160 3300013105 Ga0157369_10001927 Ga0157369_1000192717 462
161 3300025284 Ga0209130_1000150 Ga0209130_100015022 462
162 3300025302 Ga0207426_1003521 Ga0207426_10035214 462
163 3300027876 Ga0209974_10004658 Ga0209974_100046582 462
164 3300037418 Ga0395900_0000260 Ga0395900_0000260_40377_41807 462
165 3300037418 Ga0395900_0060353 Ga0395900_0060353_23_1453 462
166 3300037466 Ga0395898_0000917 Ga0395898_0000917_24330_25760 462
167 3300038443 Ga0395901_0017893 Ga0395901_0017893_1709_3139 462
168 3300044658 Ga0466972_0016898 Ga0466972_0016898_1699_3129 462
169 3300044684 Ga0466966_0016447 Ga0466966_0016447_2594_4024 462
170 3300044694 Ga0466963_0011818 Ga0466963_0011818_1929_3359 462
171 3300045836 Ga0466958_0033737 Ga0466958_0033737_1002_2432 462
172 3300061719 Ga0466962_0002153 Ga0466962_0002153_42_1472 462
173 3300005327 Ga0070658_10008522 Ga0070658_100085226 463
174 3300005563 Ga0068855_100146336 Ga0068855_1001463362 463
175 3300009093 Ga0105240_10002251 Ga0105240_1000225119 463
176 3300010375 Ga0105239_10016383 Ga0105239_100163836 463
177 3300013104 Ga0157370_10056484 Ga0157370_100564843 463
178 3300013296 Ga0157374_10007747 Ga0157374_100077477 463
179 3300025256 Ga0209759_1008621 Ga0209759_10086213 463
180 3300025904 Ga0207647_10000345 Ga0207647_1000034523 463
181 3300025919 Ga0207657_10003095 Ga0207657_100030953 463
182 3300025949 Ga0207667_10041138 Ga0207667_100411384 463
183 3300038443 Ga0395901_0000004 Ga0395901_0000004_420876_422327 463
184 3300044656 Ga0466969_0027999 Ga0466969_0027999_393_1850 463
185 3300044684 Ga0466966_0013254 Ga0466966_0013254_3214_4671 463
186 3300044693 Ga0466961_0006295 Ga0466961_0006295_5648_7105 463
187 3300045049 Ga0466959_0023385 Ga0466959_0023385_53_1510 463
188 3300048919 Ga0496116_0058840 Ga0496116_0058840_402_1832 463
189 iso_pu_bacteria 2547132374 2548499666 463
190 iso_pu_bacteria 2643221717 2644645017 463
191 2162886007 SwRhRL2b_contig_1964002 SwRhRL2b_0700.00002210 464
192 3300005289 Ga0065704_10077435 Ga0065704_100774354 464
193 3300005290 Ga0065712_10069007 Ga0065712_100690076 464
194 3300009011 Ga0105251_10006732 Ga0105251_100067322 464
195 3300009036 Ga0105244_10011083 Ga0105244_100110833 464
196 3300009092 Ga0105250_10000226 Ga0105250_1000022610 464
197 3300009092 Ga0105250_10000738 Ga0105250_100007382 464
198 3300012498 Ga0157345_1000013 Ga0157345_100001328 464
199 3300013102 Ga0157371_10031147 Ga0157371_100311474 464
200 3300013306 Ga0163162_10016479 Ga0163162_100164793 464
201 3300017792 Ga0163161_10049655 Ga0163161_100496551 464
202 3300025291 Ga0209675_1004863 Ga0209675_10048632 464
203 3300025711 Ga0207696_1000207 Ga0207696_100020710 464
204 3300025711 Ga0207696_1000879 Ga0207696_100087913 464
205 3300025735 Ga0207713_1000131 Ga0207713_100013111 464
206 3300027907 Ga0207428_10020653 Ga0207428_100206531 464
207 3300038705 Ga0237819_00555 Ga0237819_00555_3322_4716 464
208 3300042142 Ga0450905_000009 Ga0450905_000009_5109_6503 464
209 3300046458 Ga0495591_000518 Ga0495591_000518_8918_10312 464
210 3300046460 Ga0495638_0004811 Ga0495638_0004811_5092_6486 464
211 3300046501 Ga0495607_0007327 Ga0495607_0007327_2245_3639 464
212 3300046518 Ga0495631_0000066 Ga0495631_0000066_58479_59873 464
213 3300046518 Ga0495631_0001112 Ga0495631_0001112_12494_13888 464
214 3300046520 Ga0495637_0004509 Ga0495637_0004509_5333_6727 464
215 3300046524 Ga0495648_0000516 Ga0495648_0000516_11199_12593 464
216 3300046524 Ga0495648_0005699 Ga0495648_0005699_5107_6501 464
217 3300046530 Ga0495654_0004897 Ga0495654_0004897_4452_5846 464
218 3300046542 Ga0495597_0000233 Ga0495597_0000233_29315_30709 464
219 3300046558 Ga0495633_0000364 Ga0495633_0000364_28419_29813 464
220 3300046558 Ga0495633_0051405 Ga0495633_0051405_325_1719 464
221 3300046648 Ga0495611_0013261 Ga0495611_0013261_1862_3256 464
222 3300046660 Ga0495625_0074716 Ga0495625_0074716_562_1956 464
223 3300046665 Ga0495661_0000655 Ga0495661_0000655_28396_29790 464
224 3300046665 Ga0495661_0022367 Ga0495661_0022367_1567_2961 464
225 3300046689 Ga0495613_0001118 Ga0495613_0001118_13853_15247 464
226 3300047446 Ga0495679_022258 Ga0495679_022258_443_1837 464
227 3300047469 Ga0495673_0002911 Ga0495673_0002911_900_2294 464
228 3300047470 Ga0495681_0014643 Ga0495681_0014643_1151_2545 464
229 3300048091 Ga0495626_0000937 Ga0495626_0000937_18911_20305 464
230 3300048920 Ga0496117_0002934 Ga0496117_0002934_14267_15661 464
231 3300048920 Ga0496117_0015852 Ga0496117_0015852_4072_5466 464
232 3300048921 Ga0496118_0015710 Ga0496118_0015710_4983_6377 464
233 3300048921 Ga0496118_0016259 Ga0496118_0016259_580_1974 464
234 3300048924 Ga0496121_0003758 Ga0496121_0003758_4986_6380 464
235 3300048924 Ga0496121_0010950 Ga0496121_0010950_3788_5182 464
236 3300048924 Ga0496121_0010984 Ga0496121_0010984_4433_5827 464
237 3300048925 Ga0496122_0049503 Ga0496122_0049503_206_1600 464
238 3300048926 Ga0496123_0024863 Ga0496123_0024863_2385_3779 464
239 3300048927 Ga0496124_0003018 Ga0496124_0003018_4993_6387 464
240 3300048928 Ga0496125_0008191 Ga0496125_0008191_6482_7876 464
241 3300048929 Ga0496126_0000929 Ga0496126_0000929_31774_33168 464
242 3300053111 Ga0500572_000117 Ga0500572_000117_18447_19841 464
243 3300053161 Ga0500634_0000176 Ga0500634_0000176_14630_16024 464

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02784

Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

89

300

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6n2a-assembly1.cif.gz_B meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1) 0.8828 37 464
2p3e-assembly1.cif.gz_B crystal structure of aq1208 from aquifex aeolicus 0.864 40 463
2p3e-assembly1.cif.gz_A crystal structure of aq1208 from aquifex aeolicus 0.8566 40 463
4xg1-assembly1.cif.gz_A psychromonas ingrahamii diaminopimelate decarboxylase with llp 0.8556 42 463
3n2b-assembly1.cif.gz_B 1.8 angstrom resolution crystal structure of diaminopimelate decarboxylase (lysa) from vibrio cholerae. 0.8488 40 463
ID Description Score Start End Superfamily
4xg1A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8614 61 328 3.20.20.10
6n2aA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8601 59 328 3.20.20.10
4xg1A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8541 61 328 3.20.20.10
6n2aA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8467 59 328 3.20.20.10
2p3eA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.846 63 328 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A2K4KXG5-F1-model_v4 Decarboxylase 0.962 20 464 GO:0008836
GO:0009089
AF-A0A2K4KXG5-F1-model_v4 Decarboxylase 0.9599 20 464 GO:0008836
GO:0009089
AF-A0A7X3VJJ1-F1-model_v4 Diaminopimelate decarboxylase 0.9516 59 178 GO:0008836
GO:0009089
AF-A0A523APR1-F1-model_v4 Diaminopimelate decarboxylase 0.9359 42 171 GO:0008836
GO:0009089
AF-A0A662RUG4-F1-model_v4 Diaminopimelate decarboxylase 0.9358 40 161 GO:0006596
GO:0008836
GO:0009089

Feature Viewer

pLDDT pTM Quality
86.99 0.88 High
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Predicted Structure (AlphaFold2)

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