|
Taxon Oid |
3300021320
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana |
| Genome Name Sample Name |
Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300021320 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Nodule |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.4.15.2 |
| Img Submission Id |
160074 |
|
Gold Analysis Project Id
|
Ga0214544
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0242237
|
|
Gold Study Id
|
Gs0114676
|
| Add Date |
11/02/2017 00:00:00 |
| Assembly Method |
SPAdes v. 3.11.1-check |
| Has Coverage |
True |
| Public Release Date |
01/03/2018 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Tijana Glavina del Rio |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
Ann M. Hirsch |
| Contact Email |
[email protected] |
| Contact Name |
Ann M. Hirsch |
| Award Doi |
10.46936/10.25585/60000811 |
| Funding Program |
CSP |
| Funding Year |
2014 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA441058 |
| Ncbi Biosample Accession |
SAMN08776110 |
| Sequencing Method |
Illumina HiSeq 2500-1TB |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Nodule |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
10.000000 |
| Geographic Location |
USA: California |
| Habitat |
root nodules |
| Isolation |
cowpea nodules |
| Isolation Country |
8855 |
| Latitude |
34.06 |
| Longitude |
-118.44 |
| Sample Collection Date |
2017/8/3 |
| Host Name |
Vigna unguiculata |
| Genome Size Assembled |
492357462 |
| Gene Count Assembled |
444634 |