F346793

General Info

Members Datasets Scaffolds Average Seq Length
234 161 221 861

Family's Representative Sequence

Representative Sequence 3300005344|Ga0070661_100001756|Ga0070661_1000017563
Length 937
Sequence MTTGKRPTSAELRALFLKFFRERGHQIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGKDKRSYNRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWDFVTGKDWLGIDPQRLMVTVYHTDDEAFDVWNKDIGLPPSRIVRIGDNPGGGSDNFWQMGETSEIFYDHGADVPGGPPGSPDADGDRWIEIWNLVFMQFDRSAEGVLTPLPKPSVDTGMGLERTAAVMQGVHSNYEIDLFVNLIKAAAEATNTRDLEAKSLRVIADHIRASAFLIADGVFPSNEGRGYVLRRIVRRALRHGYILGQSQPFFYQLVAALEKEMGAAYPELKTQRTQIERVLKQEEERFAETLSQGMALLDTAIGSLKDSKVIPGETVFRLYDTFGFPVDLTADIARERGLTIDLAGYEAAMERQRKQSQEASKFGVDLRSGVTVEGKTNFSGYDHLADTGTIVTILKNKEHVTTLRQGEEGQVVLDHTPFYAESGGQVGDTGTLVAGAARFEVTDTQKIGSAFAHIGRVTSGEFKQGARVEARVDEGRRRAIVLNHSATHLLHAALRKVLGTHVTQKGSLVAPDRLRFDFSHFQPMTQGELQQVERMVNEQIRANSAGETRLMKHDAAVASGAMALFGEKYDDEVRVLNFGDFSVELCGGTHVHRTGDIGLFKIVTEGGIQAGVRRIEAVTGQGALDWVAKSDQVLRELAAIVKANRDDVEDKVRQLAERSRKLEKEVTTLKSKLASGQGGDLSSSAVEVAGVKVVDACRWRRRPGVARRRRSTQEQITFRRNRARLRARTGQNRAHRGCHAGSDQENKSWRPRLGAVAARPIVLSRTFQHRVRATNPDVHGLRRAPLACTMRRTTAPARSRRCYVYRAGEKNRLRRNSQSRQRCGGANIPRKYFVSAVRVSRMVSGKSRSPLQISVTYSRF

Samples

Sample ID Description Type Environment
1 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
2 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
3 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
4 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
5 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
6 2808606379 Pseudomonas sp. SJZ079 Isolate Rhizosphere
7 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
8 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
9 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
10 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
11 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
12 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
13 2939615513 Lactococcus lactis 1925 Isolate Rhizosphere
14 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
15 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
16 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
17 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
19 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
20 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
21 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
26 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
27 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
28 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
29 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
30 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
33 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
34 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
44 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
45 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
46 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
51 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
52 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
53 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
55 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
56 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
57 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
60 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
92 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
95 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
96 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
97 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
98 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
99 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
100 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
101 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
102 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
103 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
104 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
105 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
107 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
108 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
109 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
110 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
111 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
112 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
115 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
116 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
117 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
118 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
119 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
120 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
121 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
122 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
123 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
124 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
125 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
126 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
127 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
128 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
129 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
130 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
131 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
132 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
137 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
140 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
146 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
149 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
150 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
153 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
154 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
155 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
156 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
157 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
158 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
159 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
160 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
161 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.74
Metatranscriptomes 1.71
Isolates 5.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.42
Nodule 0
Rhizoplane 2.14
Rhizosphere 81.62
Stem 0
Stem Tuber 0
Unclassified 12.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10000155 3300002459 Bacteria 32889
2 Ga0065714_10065456 3300005288 Bacteria 9974
3 Ga0065712_10068214 3300005290 Bacteria 12867
4 Ga0065712_10076603 3300005290 Bacteria 3633
5 Ga0065715_10091016 3300005293 Bacteria 6208
6 Ga0065715_10099393 3300005293 Bacteria 3417
7 Ga0065707_10082836 3300005295 Bacteria 11805
8 Ga0065707_10082927 3300005295 Bacteria 11379
9 Ga0070690_100003560 3300005330 Bacteria 8545
10 Ga0068869_100020975 3300005334 Bacteria 4490
11 Ga0070687_100003219 3300005343 Bacteria 6307
12 Ga0070661_100001756 3300005344 Bacteria 15034
13 Ga0070661_100030709 3300005344 Bacteria 3882
14 Ga0070668_100015562 3300005347 Bacteria 5686
15 Ga0070668_100034466 3300005347 Bacteria 3857
16 Ga0070668_100062544 3300005347 Bacteria 2884
17 Ga0070669_100026274 3300005353 Bacteria 4188
18 Ga0070675_100004888 3300005354 Bacteria 10224
19 Ga0070671_100006036 3300005355 Bacteria 9650
20 Ga0070671_100007666 3300005355 Bacteria 8630
21 Ga0070688_100009036 3300005365 Bacteria 5432
22 Ga0070667_100006492 3300005367 Bacteria 9724
23 Ga0070708_100001443 3300005445 Bacteria 18135
24 Ga0070708_100007633 3300005445 Bacteria 8665
25 Ga0070678_100032242 3300005456 Bacteria 3624
26 Ga0070662_100004176 3300005457 Bacteria 9101
27 Ga0070662_100031800 3300005457 Bacteria 3706
28 Ga0068867_100019566 3300005459 Bacteria 4823
29 Ga0070685_10021066 3300005466 Bacteria 3539
30 Ga0070699_100026587 3300005518 Bacteria 4990
31 Ga0070684_100004812 3300005535 Bacteria 10318
32 Ga0070665_100033089 3300005548 Bacteria 5202
33 Ga0068859_100009956 3300005617 Bacteria 9589
34 Ga0068864_100000701 3300005618 Bacteria 28115
35 Ga0068864_100000829 3300005618 Bacteria 26078
36 Ga0068864_100055000 3300005618 Bacteria 3435
37 Ga0068861_100005506 3300005719 Bacteria 8578
38 Ga0068861_100011469 3300005719 Bacteria 6166
39 Ga0068861_100035156 3300005719 Bacteria 3710
40 Ga0068863_100000864 3300005841 Bacteria 30310
41 Ga0068863_100002236 3300005841 Bacteria 19215
42 Ga0068863_100006333 3300005841 Bacteria 11608
43 Ga0068858_100000557 3300005842 Bacteria 38867
44 Ga0068862_100002671 3300005844 Bacteria 15688
45 Ga0068862_100003173 3300005844 Bacteria 14268
46 Ga0081455_10001722 3300005937 Bacteria 26500
47 Ga0081455_10006723 3300005937 Bacteria 12281
48 Ga0081539_10000006 3300005985 Bacteria 534555
49 Ga0075364_10022719 3300006051 Bacteria 3965
50 Ga0097621_100025799 3300006237 Bacteria 4601
51 Ga0075428_100004657 3300006844 Bacteria 15178
52 Ga0075428_100040966 3300006844 Bacteria 5093
53 Ga0075430_100000310 3300006846 Bacteria 34603
54 Ga0075430_100014275 3300006846 Bacteria 6771
55 Ga0075430_100021680 3300006846 Bacteria 5460
56 Ga0075431_100000101 3300006847 Bacteria 53683
57 Ga0075431_100005001 3300006847 Bacteria 13044
58 Ga0075433_10018057 3300006852 Bacteria 5855
59 Ga0075434_100035722 3300006871 Bacteria 4913
60 Ga0075429_100000383 3300006880 Bacteria 32608
61 Ga0075429_100003366 3300006880 Bacteria 13628
62 Ga0075429_100062480 3300006880 Bacteria 3244
63 Ga0097620_100009956 3300006931 Bacteria 9589
64 Ga0075435_100001322 3300007076 Bacteria 15927
65 Ga0075435_100027680 3300007076 Bacteria 4437
66 Ga0099794_10016595 3300007265 Bacteria 3267
67 Ga0105240_10026773 3300009093 Bacteria 7562
68 Ga0111539_10048738 3300009094 Bacteria 5055
69 Ga0111539_10050099 3300009094 Bacteria 4976
70 Ga0111539_10069872 3300009094 Bacteria 4146
71 Ga0111539_10069919 3300009094 Bacteria 4144
72 Ga0114129_10000264 3300009147 Bacteria 59324
73 Ga0114129_10167083 3300009147 Bacteria 3002
74 Ga0105238_10000328 3300009551 Bacteria 51848
75 Ga0105238_10005238 3300009551 Bacteria 12819
76 Ga0105249_10031060 3300009553 Bacteria 4829
77 Ga0163162_10032071 3300013306 Bacteria 5216
78 Ga0163162_10084789 3300013306 Bacteria 3244
79 Ga0163163_10003698 3300014325 Bacteria 13020
80 Ga0163163_10003992 3300014325 Bacteria 12588
81 Ga0157380_10000636 3300014326 Bacteria 21640
82 Ga0182008_10016629 3300014497 Bacteria 3821
83 Ga0157379_10031959 3300014968 Bacteria 4690
84 Ga0157376_10086544 3300014969 Bacteria 2702
85 Ga0209437_100110 3300025233 Bacteria 215040
86 Ga0207696_1000875 3300025711 Bacteria 18746
87 Ga0207655_1008757 3300025728 Bacteria 6373
88 Ga0207655_1011766 3300025728 Bacteria 5174
89 Ga0207713_1000028 3300025735 Bacteria 309074
90 Ga0207653_10001159 3300025885 Bacteria 8632
91 Ga0207682_10003867 3300025893 Bacteria 6413
92 Ga0207688_10018632 3300025901 Bacteria 3776
93 Ga0207643_10000065 3300025908 Bacteria 69837
94 Ga0207643_10010663 3300025908 Bacteria 4953
95 Ga0207643_10028980 3300025908 Bacteria 3078
96 Ga0207695_10060866 3300025913 Bacteria 3905
97 Ga0207694_10001511 3300025924 Bacteria 19800
98 Ga0207650_10002473 3300025925 Bacteria 12851
99 Ga0207659_10025681 3300025926 Bacteria 3963
100 Ga0207644_10003845 3300025931 Bacteria 9730
101 Ga0207706_10050223 3300025933 Bacteria 3686
102 Ga0207670_10019493 3300025936 Bacteria 4145
103 Ga0207689_10027623 3300025942 Bacteria 4748
104 Ga0207689_10035446 3300025942 Bacteria 4145
105 Ga0207668_10005296 3300025972 Bacteria 7590
106 Ga0207668_10022806 3300025972 Bacteria 4012
107 Ga0207641_10000067 3300026088 Bacteria 155379
108 Ga0207641_10004992 3300026088 Bacteria 11379
109 Ga0207641_10012650 3300026088 Bacteria 6919
110 Ga0207641_10023185 3300026088 Bacteria 5114
111 Ga0207648_10016327 3300026089 Bacteria 6788
112 Ga0207676_10000638 3300026095 Bacteria 28145
113 Ga0207676_10001701 3300026095 Bacteria 16206
114 Ga0207676_10001952 3300026095 Bacteria 15029
115 Ga0207674_10001645 3300026116 Bacteria 28764
116 Ga0207674_10063443 3300026116 Bacteria 3729
117 Ga0207675_100003647 3300026118 Bacteria 15001
118 Ga0207675_100020680 3300026118 Bacteria 6135
119 Ga0207683_10013109 3300026121 Bacteria 7071
120 Ga0209371_1000685 3300027312 Bacteria 29025
121 Ga0209371_1005865 3300027312 Bacteria 4727
122 Ga0207428_10030639 3300027907 Bacteria 4445
123 Ga0265354_1000413 3300028016 Bacteria 7523
124 Ga0268265_10002326 3300028380 Bacteria 14430
125 Ga0268265_10009153 3300028380 Bacteria 6693
126 Ga0268265_10047460 3300028380 Bacteria 3218
127 Ga0265338_10012716 3300028800 Bacteria 9575
128 Ga0268256_1000589 3300030500 Bacteria 28983
129 Ga0268256_1005840 3300030500 Bacteria 4727
130 Ga0265760_10002171 3300031090 Bacteria 5738
131 Ga0265327_10004408 3300031251 Bacteria 12487
132 Ga0307513_10022201 3300031456 Bacteria 7465
133 Ga0307513_10027529 3300031456 Bacteria 6526
134 Ga0307509_10002816 3300031507 Bacteria 27540
135 Ga0316576_10002994 3300031727 Bacteria 9803
136 Ga0316576_10010274 3300031727 Bacteria 6074
137 Ga0316576_10011848 3300031727 Bacteria 5735
138 Ga0316576_10034119 3300031727 Bacteria 3626
139 Ga0316578_10013138 3300031728 Bacteria 4380
140 Ga0307516_10000215 3300031730 Bacteria 74522
141 Ga0307411_10029536 3300032005 Bacteria 3349
142 Ga0316583_10008666 3300032133 Bacteria 3670
143 Ga0316593_10000249 3300032168 Bacteria 8832
144 Ga0316593_10000438 3300032168 Bacteria 7594
145 Ga0316593_10001673 3300032168 Bacteria 4995
146 Ga0316574_0001466 3300035398 Bacteria 11223
147 Ga0316574_0023454 3300035398 Bacteria 3683
148 Ga0316582_0005327 3300036647 Bacteria 6612
149 Ga0316582_0011532 3300036647 Bacteria 4890
150 Ga0316582_0013514 3300036647 Bacteria 4598
151 Ga0316584_0023744 3300036712 Bacteria 4480
152 Ga0316584_0026351 3300036712 Bacteria 4273
153 Ga0395900_0000671 3300037418 Bacteria 45535
154 Ga0395900_0033291 3300037418 Bacteria 5305
155 Ga0395898_0001574 3300037466 Bacteria 31237
156 Ga0395905_0001844 3300037471 Bacteria 24458
157 Ga0316581_0001767 3300037588 Bacteria 4996
158 Ga0395901_0003009 3300038443 Bacteria 16999
159 Ga0400485_19140 3300038735 Bacteria 107256
160 Ga0400486_02256 3300038742 Bacteria 123491
161 Ga0400487_19579 3300039110 Bacteria 116630
162 Ga0439466_0000004 3300041411 Bacteria 462654
163 Ga0439463_003889 3300042016 Bacteria 3761
164 Ga0450907_000176 3300042146 Bacteria 23470
165 Ga0453684_0023592 3300044712 Bacteria 9046
166 Ga0451576_0045986 3300045051 Bacteria 4596
167 Ga0495638_0024229 3300046460 Bacteria 3960
168 Ga0495650_0008526 3300046471 Bacteria 5964
169 Ga0495583_0020009 3300046506 Bacteria 3480
170 Ga0495643_0003716 3300046522 Bacteria 11054
171 Ga0495648_0009556 3300046524 Bacteria 7486
172 Ga0495622_0010234 3300046557 Bacteria 4335
173 Ga0495661_0022671 3300046665 Bacteria 4084
174 Ga0495672_0000025 3300047320 Bacteria 365425
175 Ga0495679_004798 3300047446 Bacteria 6119
176 Ga0496109_0001521 3300048912 Bacteria 19303
177 Ga0496112_0003221 3300048915 Bacteria 13439
178 Ga0496112_0039118 3300048915 Bacteria 4633
179 Ga0496114_0056330 3300048917 Bacteria 3280
180 Ga0496117_0000043 3300048920 Bacteria 309583
181 Ga0496117_0000049 3300048920 Bacteria 294274
182 Ga0496117_0004385 3300048920 Bacteria 15636
183 Ga0496118_0000075 3300048921 Bacteria 196228
184 Ga0496118_0010206 3300048921 Bacteria 9325
185 Ga0496119_0000976 3300048922 Bacteria 36775
186 Ga0496119_0012244 3300048922 Bacteria 6991
187 Ga0496120_0001047 3300048923 Bacteria 36775
188 Ga0496120_0001875 3300048923 Bacteria 23409
189 Ga0496121_0000053 3300048924 Bacteria 312611
190 Ga0496121_0000057 3300048924 Bacteria 294291
191 Ga0496121_0041876 3300048924 Bacteria 3994
192 Ga0496123_0002637 3300048926 Bacteria 21733
193 Ga0496124_0000246 3300048927 Bacteria 104777
194 Ga0496124_0007135 3300048927 Bacteria 11964
195 Ga0496125_0009191 3300048928 Bacteria 10213
196 Ga0501039_0007474 3300049575 Bacteria 8342
197 Ga0501041_0022382 3300049577 Bacteria 3783
198 Ga0501047_0031360 3300049581 Bacteria 5126
199 Ga0501079_0030490 3300049741 Bacteria 4143
200 Ga0501081_0051632 3300049743 Bacteria 2835
201 Ga0501044_0000112 3300049823 Bacteria 98748
202 Ga0501045_0041942 3300049824 Bacteria 3330
203 nmdc:mga05p37_4561_c1 3300050507 Bacteria 16193
204 nmdc:mga09592_3478_c1 3300050508 Bacteria 9640
205 nmdc:mga09592_9163_c1 3300050508 Bacteria 8052
206 nmdc:mga06r32_20628_c1 3300050510 Bacteria 6070
207 nmdc:mga06r32_41783_c1 3300050510 Bacteria 4358
208 nmdc:mga06r32_4196_c1 3300050510 Bacteria 12911
209 nmdc:mga06r32_46760_c1 3300050510 Bacteria 4130
210 nmdc:mga08y16_59137_c1 3300050511 Bacteria 4004
211 nmdc:mga08y16_596_c1 3300050511 Bacteria 33679
212 nmdc:mga0rr50_1211_c1 3300050513 Bacteria 14025
213 nmdc:mga0rr50_38695_c1 3300050513 Bacteria 3454
214 nmdc:mga0a205_47184_c1 3300050515 Bacteria 4156
215 Ga0500572_001458 3300053111 Bacteria 6458
216 Ga0500608_001242 3300053122 Bacteria 9083
217 Ga0500559_0010977 3300053136 Bacteria 3880
218 Ga0500588_0001735 3300053146 Bacteria 4235
219 Ga0500616_0000018 3300053153 Bacteria 610976
220 Ga0500622_0001937 3300053156 Bacteria 15596
221 Ga0501084_0049523 3300054114 Bacteria 3517

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048928 Ga0496125_0009191 Ga0496125_0009191_69_2567 741
2 3300049824 Ga0501045_0041942 Ga0501045_0041942_19_2460 753
3 3300005618 Ga0068864_100000701 Ga0068864_10000070121 768
4 3300005841 Ga0068863_100000864 Ga0068863_10000086426 768
5 3300005842 Ga0068858_100000557 Ga0068858_10000055726 768
6 3300014968 Ga0157379_10031959 Ga0157379_100319592 768
7 3300026088 Ga0207641_10000067 Ga0207641_100000678 768
8 3300026095 Ga0207676_10001701 Ga0207676_100017018 768
9 3300046522 Ga0495643_0003716 Ga0495643_0003716_4889_7549 768
10 3300046557 Ga0495622_0010234 Ga0495622_0010234_762_3422 768
11 3300053111 Ga0500572_001458 Ga0500572_001458_2957_5650 768
12 3300053122 Ga0500608_001242 Ga0500608_001242_4281_6941 768
13 3300053136 Ga0500559_0010977 Ga0500559_0010977_494_3154 768
14 3300048924 Ga0496121_0000053 Ga0496121_0000053_79094_81751 771
15 3300005445 Ga0070708_100001443 Ga0070708_10000144314 778
16 3300032005 Ga0307411_10029536 Ga0307411_100295362 778
17 3300035398 Ga0316574_0023454 Ga0316574_0023454_887_3610 779
18 3300005347 Ga0070668_100034466 Ga0070668_1000344664 782
19 3300005457 Ga0070662_100004176 Ga0070662_1000041762 782
20 3300005548 Ga0070665_100033089 Ga0070665_1000330894 782
21 3300006051 Ga0075364_10022719 Ga0075364_100227193 782
22 3300014497 Ga0182008_10016629 Ga0182008_100166295 782
23 3300025233 Ga0209437_100110 Ga0209437_10011026 782
24 3300025711 Ga0207696_1000875 Ga0207696_100087514 782
25 3300025728 Ga0207655_1008757 Ga0207655_10087575 782
26 3300025728 Ga0207655_1011766 Ga0207655_10117661 782
27 3300025735 Ga0207713_1000028 Ga0207713_1000028266 782
28 3300025972 Ga0207668_10005296 Ga0207668_100052965 782
29 3300027312 Ga0209371_1000685 Ga0209371_100068517 782
30 3300027312 Ga0209371_1005865 Ga0209371_10058653 782
31 3300030500 Ga0268256_1000589 Ga0268256_100058915 782
32 3300030500 Ga0268256_1005840 Ga0268256_10058401 782
33 3300041411 Ga0439466_0000004 Ga0439466_0000004_21513_24140 782
34 3300042016 Ga0439463_003889 Ga0439463_003889_200_2827 782
35 3300042146 Ga0450907_000176 Ga0450907_000176_20536_23163 782
36 3300046524 Ga0495648_0009556 Ga0495648_0009556_1508_4135 782
37 3300047320 Ga0495672_0000025 Ga0495672_0000025_340780_343407 782
38 3300047446 Ga0495679_004798 Ga0495679_004798_816_3443 782
39 3300048920 Ga0496117_0000043 Ga0496117_0000043_21488_24115 782
40 3300048920 Ga0496117_0004385 Ga0496117_0004385_12707_15334 782
41 3300048921 Ga0496118_0000075 Ga0496118_0000075_21488_24115 782
42 3300048922 Ga0496119_0000976 Ga0496119_0000976_303_2930 782
43 3300048922 Ga0496119_0012244 Ga0496119_0012244_3466_6093 782
44 3300048923 Ga0496120_0001047 Ga0496120_0001047_303_2930 782
45 3300048923 Ga0496120_0001875 Ga0496120_0001875_19382_22009 782
46 3300048924 Ga0496121_0000057 Ga0496121_0000057_290287_292914 782
47 3300048926 Ga0496123_0002637 Ga0496123_0002637_274_2901 782
48 3300048927 Ga0496124_0000246 Ga0496124_0000246_85455_88082 782
49 3300048927 Ga0496124_0007135 Ga0496124_0007135_9047_11674 782
50 3300048921 Ga0496118_0010206 Ga0496118_0010206_6491_9148 783
51 3300053146 Ga0500588_0001735 Ga0500588_0001735_1151_3802 783
52 3300028380 Ga0268265_10009153 Ga0268265_100091534 784
53 3300005985 Ga0081539_10000006 Ga0081539_10000006473 786
54 3300005288 Ga0065714_10065456 Ga0065714_1006545613 787
55 3300025893 Ga0207682_10003867 Ga0207682_100038674 787
56 3300005295 Ga0065707_10082927 Ga0065707_100829273 788
57 3300013306 Ga0163162_10084789 Ga0163162_100847891 790
58 3300025942 Ga0207689_10027623 Ga0207689_100276234 790
59 3300026088 Ga0207641_10023185 Ga0207641_100231852 790
60 3300046506 Ga0495583_0020009 Ga0495583_0020009_10_2679 790
61 3300053153 Ga0500616_0000018 Ga0500616_0000018_494020_496650 790
62 3300009093 Ga0105240_10026773 Ga0105240_100267732 791
63 3300009551 Ga0105238_10005238 Ga0105238_100052385 791
64 3300025913 Ga0207695_10060866 Ga0207695_100608663 791
65 3300031507 Ga0307509_10002816 Ga0307509_100028166 791
66 3300014969 Ga0157376_10086544 Ga0157376_100865441 793
67 3300031456 Ga0307513_10027529 Ga0307513_100275294 793
68 3300031728 Ga0316578_10013138 Ga0316578_100131381 793
69 3300006846 Ga0075430_100000310 Ga0075430_10000031023 794
70 3300006847 Ga0075431_100005001 Ga0075431_10000500111 794
71 3300006880 Ga0075429_100000383 Ga0075429_10000038319 794
72 3300050510 nmdc:mga06r32_4196_c1 nmdc:mga06r32_4196_c1_3304_5949 794
73 3300005347 Ga0070668_100015562 Ga0070668_1000155624 795
74 3300005295 Ga0065707_10082836 Ga0065707_100828362 796
75 3300038735 Ga0400485_19140 Ga0400485_19140_42230_44917 796
76 3300038742 Ga0400486_02256 Ga0400486_02256_47362_50049 796
77 3300039110 Ga0400487_19579 Ga0400487_19579_97200_99887 796
78 3300048924 Ga0496121_0041876 Ga0496121_0041876_442_3108 796
79 3300031251 Ga0265327_10004408 Ga0265327_1000440810 800
80 3300005290 Ga0065712_10068214 Ga0065712_100682147 801
81 3300005293 Ga0065715_10091016 Ga0065715_100910163 801
82 3300006871 Ga0075434_100035722 Ga0075434_1000357223 801
83 3300007076 Ga0075435_100001322 Ga0075435_10000132212 801
84 3300009094 Ga0111539_10048738 Ga0111539_100487383 801
85 3300031727 Ga0316576_10034119 Ga0316576_100341192 801
86 3300048915 Ga0496112_0003221 Ga0496112_0003221_1538_4174 801
87 3300050513 nmdc:mga0rr50_1211_c1 nmdc:mga0rr50_1211_c1_2230_4866 801
88 3300031727 Ga0316576_10002994 Ga0316576_100029947 803
89 3300031727 Ga0316576_10011848 Ga0316576_100118485 803
90 3300035398 Ga0316574_0001466 Ga0316574_0001466_1342_3948 803
91 3300036647 Ga0316582_0011532 Ga0316582_0011532_1097_3703 803
92 3300036712 Ga0316584_0026351 Ga0316584_0026351_81_2687 803
93 3300028800 Ga0265338_10012716 Ga0265338_100127166 805
94 3300031730 Ga0307516_10000215 Ga0307516_1000021570 805
95 3300037418 Ga0395900_0000671 Ga0395900_0000671_13374_16046 805
96 3300037466 Ga0395898_0001574 Ga0395898_0001574_3493_6165 805
97 3300037471 Ga0395905_0001844 Ga0395905_0001844_12460_15132 805
98 3300038443 Ga0395901_0003009 Ga0395901_0003009_13374_16046 805
99 iso_pu_bacteria 2939615513 2939615933 805
100 3300044712 Ga0453684_0023592 Ga0453684_0023592_4698_7274 806
101 3300048920 Ga0496117_0000049 Ga0496117_0000049_191076_193694 806
102 3300005344 Ga0070661_100001756 Ga0070661_1000017563 807
103 3300009094 Ga0111539_10069872 Ga0111539_100698723 807
104 3300009551 Ga0105238_10000328 Ga0105238_1000032840 807
105 3300014326 Ga0157380_10000636 Ga0157380_1000063615 807
106 3300025924 Ga0207694_10001511 Ga0207694_100015118 807
107 3300026116 Ga0207674_10063443 Ga0207674_100634432 807
108 3300050511 nmdc:mga08y16_59137_c1 nmdc:mga08y16_59137_c1_876_3518 807
109 iso_pu_bacteria 2606217733 2608379844 807
110 iso_pu_bacteria 2808606379 2808939289 807
111 iso_pu_bacteria 2811994881 2812371358 807
112 iso_pu_bacteria 2923519811 2923525471 807
113 3300053156 Ga0500622_0001937 Ga0500622_0001937_7210_9855 808
114 iso_pu_bacteria 2916178963 2916181283 808
115 iso_pu_bacteria 2919688452 2919689957 808
116 3300005290 Ga0065712_10076603 Ga0065712_100766032 809
117 3300005293 Ga0065715_10099393 Ga0065715_100993932 809
118 3300005330 Ga0070690_100003560 Ga0070690_1000035606 809
119 3300005334 Ga0068869_100020975 Ga0068869_1000209753 809
120 3300005343 Ga0070687_100003219 Ga0070687_1000032196 809
121 3300005354 Ga0070675_100004888 Ga0070675_1000048883 809
122 3300005355 Ga0070671_100006036 Ga0070671_1000060369 809
123 3300005365 Ga0070688_100009036 Ga0070688_1000090362 809
124 3300005367 Ga0070667_100006492 Ga0070667_1000064925 809
125 3300005456 Ga0070678_100032242 Ga0070678_1000322422 809
126 3300005459 Ga0068867_100019566 Ga0068867_1000195663 809
127 3300005466 Ga0070685_10021066 Ga0070685_100210661 809
128 3300005535 Ga0070684_100004812 Ga0070684_1000048124 809
129 3300005617 Ga0068859_100009956 Ga0068859_1000099569 809
130 3300005618 Ga0068864_100000829 Ga0068864_10000082929 809
131 3300005719 Ga0068861_100035156 Ga0068861_1000351562 809
132 3300005841 Ga0068863_100002236 Ga0068863_10000223621 809
133 3300005844 Ga0068862_100002671 Ga0068862_10000267117 809
134 3300006237 Ga0097621_100025799 Ga0097621_1000257993 809
135 3300006844 Ga0075428_100004657 Ga0075428_10000465714 809
136 3300006846 Ga0075430_100021680 Ga0075430_1000216801 809
137 3300006847 Ga0075431_100000101 Ga0075431_10000010150 809
138 3300006931 Ga0097620_100009956 Ga0097620_1000099569 809
139 3300009094 Ga0111539_10069919 Ga0111539_100699193 809
140 3300013306 Ga0163162_10032071 Ga0163162_100320713 809
141 3300014325 Ga0163163_10003698 Ga0163163_100036988 809
142 3300025901 Ga0207688_10018632 Ga0207688_100186322 809
143 3300025908 Ga0207643_10010663 Ga0207643_100106634 809
144 3300025926 Ga0207659_10025681 Ga0207659_100256811 809
145 3300025936 Ga0207670_10019493 Ga0207670_100194931 809
146 3300025942 Ga0207689_10035446 Ga0207689_100354462 809
147 3300026088 Ga0207641_10012650 Ga0207641_100126504 809
148 3300026089 Ga0207648_10016327 Ga0207648_100163276 809
149 3300026095 Ga0207676_10001952 Ga0207676_100019528 809
150 3300026121 Ga0207683_10013109 Ga0207683_100131097 809
151 3300027907 Ga0207428_10030639 Ga0207428_100306393 809
152 3300045051 Ga0451576_0045986 Ga0451576_0045986_966_3617 809
153 3300046471 Ga0495650_0008526 Ga0495650_0008526_1974_4619 809
154 3300048915 Ga0496112_0039118 Ga0496112_0039118_1738_4389 809
155 3300048917 Ga0496114_0056330 Ga0496114_0056330_616_3243 809
156 3300050508 nmdc:mga09592_3478_c1 nmdc:mga09592_3478_c1_958_3606 809
157 3300050510 nmdc:mga06r32_46760_c1 nmdc:mga06r32_46760_c1_1030_3678 809
158 3300050511 nmdc:mga08y16_596_c1 nmdc:mga08y16_596_c1_981_3629 809
159 3300005347 Ga0070668_100062544 Ga0070668_1000625442 810
160 3300005353 Ga0070669_100026274 Ga0070669_1000262741 810
161 3300005457 Ga0070662_100031800 Ga0070662_1000318003 810
162 3300005719 Ga0068861_100005506 Ga0068861_1000055068 810
163 3300005844 Ga0068862_100003173 Ga0068862_1000031732 810
164 3300006844 Ga0075428_100040966 Ga0075428_1000409662 810
165 3300006846 Ga0075430_100014275 Ga0075430_1000142751 810
166 3300006880 Ga0075429_100003366 Ga0075429_10000336610 810
167 3300009094 Ga0111539_10050099 Ga0111539_100500993 810
168 3300009147 Ga0114129_10000264 Ga0114129_1000026438 810
169 3300009147 Ga0114129_10167083 Ga0114129_101670831 810
170 3300009553 Ga0105249_10031060 Ga0105249_100310603 810
171 3300025933 Ga0207706_10050223 Ga0207706_100502232 810
172 3300025972 Ga0207668_10022806 Ga0207668_100228063 810
173 3300026118 Ga0207675_100003647 Ga0207675_10000364715 810
174 3300028380 Ga0268265_10002326 Ga0268265_100023263 810
175 3300032168 Ga0316593_10000249 Ga0316593_1000024910 810
176 3300036647 Ga0316582_0005327 Ga0316582_0005327_3010_5607 810
177 3300049581 Ga0501047_0031360 Ga0501047_0031360_1754_4393 810
178 3300049823 Ga0501044_0000112 Ga0501044_0000112_27921_30560 810
179 3300050508 nmdc:mga09592_9163_c1 nmdc:mga09592_9163_c1_2921_5572 810
180 3300050510 nmdc:mga06r32_20628_c1 nmdc:mga06r32_20628_c1_2646_5300 810
181 3300050510 nmdc:mga06r32_41783_c1 nmdc:mga06r32_41783_c1_894_3545 810
182 iso_pu_bacteria 2643221598 2643999799 810
183 iso_pu_bacteria 2643221614 2644088238 810
184 iso_pu_bacteria 2643221661 2644343476 810
185 iso_pu_bacteria 2643221666 2644369047 810
186 iso_pu_bacteria 2883577096 2883580712 810
187 iso_pu_bacteria 2919497567 2919498328 810
188 3300007265 Ga0099794_10016595 Ga0099794_100165952 811
189 3300028016 Ga0265354_1000413 Ga0265354_100041311 811
190 3300031090 Ga0265760_10002171 Ga0265760_100021714 811
191 3300036712 Ga0316584_0023744 Ga0316584_0023744_1726_4326 811
192 3300005719 Ga0068861_100011469 Ga0068861_1000114695 812
193 3300025908 Ga0207643_10028980 Ga0207643_100289801 812
194 3300026118 Ga0207675_100020680 Ga0207675_1000206803 812
195 3300032133 Ga0316583_10008666 Ga0316583_100086663 812
196 3300032168 Ga0316593_10000438 Ga0316593_100004385 812
197 3300032168 Ga0316593_10001673 Ga0316593_100016735 812
198 3300036647 Ga0316582_0013514 Ga0316582_0013514_806_3430 812
199 3300037588 Ga0316581_0001767 Ga0316581_0001767_1820_4444 812
200 3300031727 Ga0316576_10010274 Ga0316576_100102745 813
201 3300049575 Ga0501039_0007474 Ga0501039_0007474_1861_4482 813
202 3300049577 Ga0501041_0022382 Ga0501041_0022382_799_3420 813
203 3300049741 Ga0501079_0030490 Ga0501079_0030490_1282_3903 813
204 3300049743 Ga0501081_0051632 Ga0501081_0051632_98_2719 813
205 3300054114 Ga0501084_0049523 Ga0501084_0049523_388_3009 813
206 3300031456 Ga0307513_10022201 Ga0307513_100222012 814
207 3300046460 Ga0495638_0024229 Ga0495638_0024229_750_3398 814
208 3300005937 Ga0081455_10006723 Ga0081455_100067238 815
209 3300005937 Ga0081455_10001722 Ga0081455_1000172220 816
210 3300005355 Ga0070671_100007666 Ga0070671_1000076664 824
211 3300025931 Ga0207644_10003845 Ga0207644_100038454 824
212 3300005445 Ga0070708_100007633 Ga0070708_1000076332 825
213 3300005518 Ga0070699_100026587 Ga0070699_1000265874 825
214 3300007076 Ga0075435_100027680 Ga0075435_1000276804 825
215 3300050513 nmdc:mga0rr50_38695_c1 nmdc:mga0rr50_38695_c1_510_3155 825
216 3300006880 Ga0075429_100062480 Ga0075429_1000624802 827
217 3300002459 JGI24751J29686_10000155 JGI24751J29686_1000015512 830
218 3300005344 Ga0070661_100030709 Ga0070661_1000307091 830
219 3300005618 Ga0068864_100055000 Ga0068864_1000550002 830
220 3300005841 Ga0068863_100006333 Ga0068863_1000063332 830
221 3300006852 Ga0075433_10018057 Ga0075433_100180575 830
222 3300014325 Ga0163163_10003992 Ga0163163_1000399210 830
223 3300025885 Ga0207653_10001159 Ga0207653_100011594 830
224 3300025908 Ga0207643_10000065 Ga0207643_1000006558 830
225 3300025925 Ga0207650_10002473 Ga0207650_1000247310 830
226 3300026088 Ga0207641_10004992 Ga0207641_1000499210 830
227 3300026095 Ga0207676_10000638 Ga0207676_1000063816 830
228 3300026116 Ga0207674_10001645 Ga0207674_100016457 830
229 3300028380 Ga0268265_10047460 Ga0268265_100474602 830
230 3300037418 Ga0395900_0033291 Ga0395900_0033291_2453_5104 830
231 3300046665 Ga0495661_0022671 Ga0495661_0022671_47_2671 830
232 3300048912 Ga0496109_0001521 Ga0496109_0001521_11528_14152 830
233 3300050507 nmdc:mga05p37_4561_c1 nmdc:mga05p37_4561_c1_737_3379 830
234 3300050515 nmdc:mga0a205_47184_c1 nmdc:mga0a205_47184_c1_670_3312 830

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07973

tRNA_SAD

Threonyl and Alanyl tRNA synthetase second additional domain

650

693

0.99

PF01411

tRNA-synt_2c

tRNA synthetases class II (A)

11

553

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3htz-assembly1.cif.gz_A crystal structure of the catalytic fragment of alanyl-trna synthetase in complex with l-serine: re-refined 0.9308 1 426
1riq-assembly1.cif.gz_A the crystal structure of the catalytic fragment of the alanyl-trna synthetase 0.9286 1 426
3hxz-assembly1.cif.gz_A crystal structure of catalytic fragment of e. coli alars g237a in complex with alasa 0.9228 1 428
3hxx-assembly1.cif.gz_A crystal structure of catalytic fragment of e. coli alars in complex with amppcp 0.9203 1 428
5v59-assembly1.cif.gz_A crystal structure of catalytic fragment of human alars in complex with aze-sa 0.9195 1 353
ID Description Score Start End Superfamily
af_P9WFW7_1_245_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9646 1 234 3.30.930.10
af_P40825_614_789_3.30.980.10 Alpha Beta;2-Layer Sandwich;Threonyl-tRNA Synthetase; Chain A, domain 2;Threonyl-trna Synthetase; Chain A, domain 2 0.9618 534 678 3.30.980.10
3hxxA01 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9282 1 234 3.30.930.10
af_P9WFW7_1_245_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9184 1 234 3.30.930.10
af_P50475_4_255_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9165 1 234 3.30.930.10
ID Description Score Start End GO Terms
AF-A0A537WH13-F1-model_v4 alanine--tRNA ligase (EC 6.1.1.7) 0.9825 1 241 GO:0000049
GO:0002161
GO:0004813
GO:0005524
GO:0005829
GO:0006419
AF-A0A3D0X827-F1-model_v4 Alanine--tRNA ligase 0.9805 225 338 GO:0000049
GO:0002161
GO:0004813
GO:0005524
GO:0005829
GO:0006419
AF-A0A537WH13-F1-model_v4 alanine--tRNA ligase (EC 6.1.1.7) 0.9785 1 241 GO:0000049
GO:0002161
GO:0004813
GO:0005524
GO:0005829
GO:0006419
AF-D7PJQ2-F1-model_v4 alanine--tRNA ligase (EC 6.1.1.7) 0.977 188 358 GO:0000049
GO:0002161
GO:0004813
GO:0005524
GO:0005829
GO:0006419
GO:0016740
AF-A0A2N2AR99-F1-model_v4 deleted 0.973 6 121

Feature Viewer

pLDDT pTM Quality
86.55 0.55 Medium
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Predicted Structure (AlphaFold2)

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