F336889

General Info

Members Datasets Scaffolds Average Seq Length
224 164 203 464

Family's Representative Sequence

Representative Sequence 3300031730|Ga0307516_10000432|Ga0307516_1000043240
Length 515
Sequence MQDDKNNPMPGVAARRFHNRPELQPARGTALNHVLIVDDDVDSATSLRDLVATENFSVALAHTLRDARRQIALQPPDLVLLDLQLPDGSGLDLFSDPDLVASSELVLITGHASLETSIEALRLGAADYIVKPIVMRQLQGVLSRFMKPAALKADVARMNAGLASKGHFGHLWGQAAPMLRVYEQISRVAGTAVTVFITGESGSGKEVVAQTVHDLSRRRKQPFLAVNCGAISPNLIESEIFGHEKGSFTGADRQHLGFFERANGGTLFLDEITEMPQELQVKLLRVLETGRFMRVGSTQSQEADVRVIAATNRQPEQAVASGKLREDLLYRLNVFPIELPPLRDRLSDVPLLAQHFLEGIAKQEGQAKRFTQAALDRLGCYHWPGNVRELRNAVQRAYVMASGDEISDDWLPRPQPGMAVPAAASPEVELATGAEAEPAGVTTPAATHTADSANVVTLPVGTSMAQAERALIEATLRHHKYQKERTAAVLGISLKTLYNRLKEYAADGEDTSTPS

Samples

Sample ID Description Type Environment
1 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
2 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
3 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
4 2643221585 Pelomonas sp. Root662 Isolate Unclassified
5 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
6 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
7 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
8 2643221656 Pelomonas sp. Root405 Isolate Unclassified
9 2734482258 Glomeribacter sp. phylotype 3 Isolate Unclassified
10 2738541337 Pelomonas sp. BT06 Isolate Unclassified
11 2831864461 Roseateles noduli HZ7 Isolate Nodule
12 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
13 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
14 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
15 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
16 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
17 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
18 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
19 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
20 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
21 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
22 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
23 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
24 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
25 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
26 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
29 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
30 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
31 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
44 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
53 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
77 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
80 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
81 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
82 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
83 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
84 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
85 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
86 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
89 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
90 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
94 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
97 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
98 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
99 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
100 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
101 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
102 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
103 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
104 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
105 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
106 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
110 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
111 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
112 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
113 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
114 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
115 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
116 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
117 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
118 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
119 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
120 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
121 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
122 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
123 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
124 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
125 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
126 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
127 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
128 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
129 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
130 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
131 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
132 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
133 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
134 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
135 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
136 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
137 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
138 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
139 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
140 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
141 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
144 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
145 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
146 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
147 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
148 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
149 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
150 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
151 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
152 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
153 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
154 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
155 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
156 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
157 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
158 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
159 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
160 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
161 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
162 642555112 Paraburkholderia phymatum STM815 Isolate Nodule
163 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
164 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.07
Metatranscriptomes 0.89
Isolates 8.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.45
Nodule 3.57
Rhizoplane 0
Rhizosphere 56.25
Stem 0
Stem Tuber 0
Unclassified 14.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000065 3300003187 Bacteria 145136
2 JGI25151J46595_10010625 3300003187 Bacteria 4265
3 rootL2_10000892 3300003322 Bacteria 46839
4 rootL2_10011585 3300003322 Bacteria 26013
5 rootL2_10024805 3300003322 Bacteria 5198
6 rootH1_10000812 3300003323 Bacteria 7691
7 rootH1_10016719 3300003323 Bacteria 30697
8 Ga0055535_1000179 3300003761 Bacteria 67830
9 Ga0055535_1000282 3300003761 Bacteria 53559
10 Ga0055526_1000670 3300003771 Bacteria 26226
11 Ga0055526_1000782 3300003771 Bacteria 23711
12 Ga0055526_1003116 3300003771 Bacteria 10746
13 Ga0055537_1001827 3300003773 Bacteria 7700
14 Ga0055524_1004930 3300003775 Bacteria 6053
15 Ga0055536_1000026 3300003781 Bacteria 166220
16 Ga0055534_1000093 3300003784 Bacteria 70047
17 Ga0055534_1000433 3300003784 Bacteria 24921
18 Ga0055531_10000002 3300003794 Bacteria 421971
19 Ga0055543_1001904 3300004625 Bacteria 7521
20 Ga0055543_1010410 3300004625 Bacteria 1951
21 Ga0065165_1000059 3300005262 Bacteria 182314
22 Ga0065165_1000378 3300005262 Bacteria 72655
23 Ga0070658_10108356 3300005327 Bacteria 2299
24 Ga0070659_100029774 3300005366 Bacteria 4221
25 Ga0070659_100048106 3300005366 Bacteria 3349
26 Ga0070708_100095506 3300005445 Bacteria 2714
27 Ga0070706_100002762 3300005467 Bacteria 17556
28 Ga0070706_100003453 3300005467 Bacteria 15563
29 Ga0070665_100105127 3300005548 Bacteria 2825
30 Ga0070664_100002824 3300005564 Bacteria 14051
31 Ga0068864_100005108 3300005618 Bacteria 10755
32 Ga0068861_100067715 3300005719 Bacteria 2757
33 Ga0075368_10004896 3300006042 Bacteria 4568
34 Ga0075370_10028172 3300006353 Bacteria 3121
35 Ga0075370_10036029 3300006353 Bacteria 2778
36 Ga0075428_100177301 3300006844 Bacteria 2308
37 Ga0075431_100149126 3300006847 Bacteria 2409
38 Ga0075433_10003557 3300006852 Bacteria 12025
39 Ga0075434_100005996 3300006871 Bacteria 11119
40 Ga0075429_100049191 3300006880 Bacteria 3666
41 Ga0075429_100075101 3300006880 Bacteria 2944
42 Ga0099823_1003691 3300006944 Bacteria 14646
43 Ga0099826_10000036 3300006948 Bacteria 104982
44 Ga0075435_100166633 3300007076 Bacteria 1858
45 Ga0105245_10002716 3300009098 Bacteria 15932
46 Ga0157378_10238023 3300013297 Bacteria 1738
47 Ga0163162_10143527 3300013306 Bacteria 2502
48 Ga0157379_10069205 3300014968 Bacteria 3156
49 Ga0209258_100258 3300025242 Bacteria 92469
50 Ga0209258_100700 3300025242 Bacteria 22801
51 Ga0209148_1006770 3300025254 Bacteria 2445
52 Ga0209759_1002485 3300025256 Bacteria 8045
53 Ga0209565_1000145 3300025263 Bacteria 97893
54 Ga0209565_1003413 3300025263 Bacteria 5153
55 Ga0209455_1000092 3300025272 Bacteria 220516
56 Ga0209673_1003701 3300025273 Bacteria 8770
57 Ga0209675_1000026 3300025291 Bacteria 284716
58 Ga0209675_1000139 3300025291 Bacteria 97978
59 Ga0209675_1004077 3300025291 Bacteria 6652
60 Ga0209676_1000059 3300025292 Bacteria 344882
61 Ga0209025_1000066 3300025294 Bacteria 298742
62 Ga0209025_1000123 3300025294 Bacteria 204125
63 Ga0209025_1000159 3300025294 Bacteria 167081
64 Ga0209025_1000463 3300025294 Bacteria 79362
65 Ga0209564_1000084 3300025295 Bacteria 252729
66 Ga0209564_1000097 3300025295 Bacteria 231436
67 Ga0209564_1000161 3300025295 Bacteria 162489
68 Ga0209564_1000851 3300025295 Bacteria 40736
69 Ga0209256_1000075 3300025299 Bacteria 236149
70 Ga0209256_1000529 3300025299 Bacteria 55351
71 Ga0209256_1000562 3300025299 Bacteria 53066
72 Ga0209256_1001729 3300025299 Bacteria 20927
73 Ga0209051_1001537 3300025303 Bacteria 19210
74 Ga0209051_1002924 3300025303 Bacteria 11709
75 Ga0209051_1005664 3300025303 Bacteria 7226
76 Ga0209051_1008445 3300025303 Bacteria 5449
77 Ga0209051_1008889 3300025303 Bacteria 5253
78 Ga0209257_1000049 3300025304 Bacteria 441224
79 Ga0209257_1001826 3300025304 Bacteria 23274
80 Ga0207705_10125267 3300025909 Bacteria 1909
81 Ga0207684_10017142 3300025910 Bacteria 6216
82 Ga0207684_10017296 3300025910 Bacteria 6185
83 Ga0207695_10035367 3300025913 Bacteria 5419
84 Ga0207695_10066381 3300025913 Bacteria 3705
85 Ga0207657_10011718 3300025919 Bacteria 8686
86 Ga0207649_10021272 3300025920 Bacteria 3731
87 Ga0207646_10034101 3300025922 Bacteria 4600
88 Ga0207687_10041838 3300025927 Bacteria 3149
89 Ga0207690_10017651 3300025932 Bacteria 4363
90 Ga0207691_10028381 3300025940 Bacteria 5240
91 Ga0207679_10026815 3300025945 Bacteria 3977
92 Ga0207677_10012976 3300026023 Bacteria 4814
93 Ga0207676_10025689 3300026095 Bacteria 4372
94 Ga0207675_100328137 3300026118 Bacteria 1495
95 Ga0209282_1000155 3300027666 Bacteria 39904
96 Ga0209974_10001211 3300027876 Bacteria 9241
97 Ga0268266_10042663 3300028379 Bacteria 3875
98 Ga0265336_10000006 3300028666 Bacteria 348453
99 Ga0307517_10052031 3300028786 Bacteria 4116
100 Ga0307515_10000067 3300028794 Bacteria 242978
101 Ga0307515_10016736 3300028794 Bacteria 13411
102 Ga0307515_10085227 3300028794 Bacteria 4046
103 Ga0265324_10001393 3300029957 Bacteria 13962
104 Ga0307513_10002911 3300031456 Bacteria 23412
105 Ga0307509_10000006 3300031507 Bacteria 421538
106 Ga0307509_10046306 3300031507 Bacteria 4683
107 Ga0307408_100000040 3300031548 Bacteria 175456
108 Ga0307516_10000414 3300031730 Bacteria 55918
109 Ga0307516_10000432 3300031730 Bacteria 55006
110 Ga0307516_10001515 3300031730 Bacteria 31972
111 Ga0307516_10120184 3300031730 Bacteria 2419
112 Ga0307405_10034584 3300031731 Bacteria 3008
113 Ga0307410_10002637 3300031852 Bacteria 8740
114 Ga0307410_10048722 3300031852 Bacteria 2840
115 Ga0307410_10081900 3300031852 Bacteria 2269
116 Ga0307410_10103996 3300031852 Bacteria 2041
117 Ga0307406_10011104 3300031901 Bacteria 5102
118 Ga0307409_100014482 3300031995 Bacteria 5132
119 Ga0307409_100058721 3300031995 Bacteria 2989
120 Ga0307409_100069734 3300031995 Bacteria 2787
121 Ga0307409_100157309 3300031995 Bacteria 1982
122 Ga0307416_100040960 3300032002 Bacteria 3604
123 Ga0307416_100072937 3300032002 Bacteria 2860
124 Ga0307414_10004384 3300032004 Bacteria 7663
125 Ga0307411_10000124 3300032005 Bacteria 24160
126 Ga0307411_10011630 3300032005 Bacteria 4762
127 Ga0307411_10093384 3300032005 Bacteria 2107
128 Ga0373939_0000221 3300035114 Bacteria 15549
129 Ga0395905_0005726 3300037471 Bacteria 12636
130 Ga0395905_0005964 3300037471 Bacteria 12340
131 Ga0436361_0229616 3300039447 Bacteria 1590
132 Ga0439437_000884 3300042000 Bacteria 3124
133 Ga0439441_008677 3300042001 Bacteria 1666
134 Ga0450914_000190 3300042118 Bacteria 2276
135 Ga0450919_000509 3300042121 Bacteria 4853
136 Ga0450890_001861 3300042127 Bacteria 2992
137 Ga0450891_000142 3300042129 Bacteria 6613
138 Ga0450918_000043 3300042531 Bacteria 25951
139 Ga0466969_0038198 3300044656 Bacteria 2417
140 Ga0466961_0071788 3300044693 Bacteria 2196
141 Ga0466968_0059151 3300044735 Bacteria 1650
142 Ga0466970_0030800 3300044765 Bacteria 2830
143 Ga0466957_0064026 3300044842 Bacteria 2261
144 Ga0451576_0091144 3300045051 Bacteria 3171
145 Ga0451576_0122976 3300045051 Bacteria 2702
146 Ga0495650_0004476 3300046471 Bacteria 9555
147 Ga0495580_0003252 3300046472 Bacteria 13889
148 Ga0495580_0203511 3300046472 Bacteria 1363
149 Ga0495605_0002069 3300046474 Bacteria 12648
150 Ga0495662_0017788 3300046476 Bacteria 3441
151 Ga0495585_0012521 3300046492 Bacteria 4996
152 Ga0495596_0000564 3300046500 Bacteria 23183
153 Ga0495607_0003359 3300046501 Bacteria 12276
154 Ga0495583_0000717 3300046506 Bacteria 42460
155 Ga0495610_0002061 3300046512 Bacteria 17160
156 Ga0495616_0003220 3300046513 Bacteria 10519
157 Ga0495628_0000074 3300046516 Bacteria 78539
158 Ga0495663_0025553 3300046525 Bacteria 1723
159 Ga0495666_0006420 3300046526 Bacteria 5919
160 Ga0495609_0001227 3300046538 Bacteria 17676
161 Ga0495656_0030162 3300046615 Bacteria 2190
162 Ga0495656_0047125 3300046615 Bacteria 1827
163 Ga0495634_0155543 3300046642 Bacteria 1443
164 Ga0495625_0011453 3300046660 Bacteria 7233
165 Ga0495671_0002063 3300046692 Bacteria 12887
166 Ga0495649_0000314 3300046694 Bacteria 42490
167 Ga0495589_0003930 3300046794 Bacteria 7974
168 Ga0495660_0072227 3300046810 Bacteria 1828
169 Ga0495604_0005410 3300047317 Bacteria 10129
170 Ga0495636_0001819 3300047318 Bacteria 8158
171 Ga0495674_0102824 3300047319 Bacteria 2429
172 Ga0495674_0123449 3300047319 Bacteria 2186
173 Ga0495677_0032526 3300047445 Bacteria 1900
174 Ga0495684_0009715 3300047471 Bacteria 7422
175 Ga0495686_0004512 3300047472 Bacteria 11414
176 Ga0495686_0013128 3300047472 Bacteria 5765
177 Ga0495593_0051302 3300047673 Bacteria 2183
178 Ga0496116_0019576 3300048919 Bacteria 5178
179 Ga0496116_0048353 3300048919 Bacteria 2855
180 Ga0496122_0002901 3300048925 Bacteria 23431
181 Ga0496123_0003440 3300048926 Bacteria 17765
182 Ga0501308_000060 3300049128 Bacteria 4560
183 Ga0501034_0000056 3300049571 Bacteria 202540
184 Ga0501198_000005 3300049649 Bacteria 156657
185 Ga0501211_000771 3300049658 Bacteria 3289
186 Ga0501222_000003 3300049662 Bacteria 157406
187 Ga0501235_003686 3300049669 Bacteria 3309
188 Ga0501253_000620 3300049683 Bacteria 3154
189 Ga0501221_000787 3300049704 Bacteria 5134
190 Ga0501268_003772 3300049765 Bacteria 2097
191 nmdc:mga0k408_139092_c1 3300050493 Bacteria 1444
192 nmdc:mga07m45_14802_c1 3300050496 Bacteria 4165
193 nmdc:mga07m45_14854_c2 3300050496 Bacteria 1677
194 nmdc:mga09592_74476_c1 3300050508 Bacteria 2885
195 nmdc:mga06r32_131461_c1 3300050510 Bacteria 2475
196 nmdc:mga0n895_14512_c1 3300050512 Bacteria 7159
197 nmdc:mga0a205_26594_c1 3300050515 Bacteria 5520
198 Ga0500635_0000007 3300053080 Bacteria 169379
199 Ga0500559_0006617 3300053136 Bacteria 5219
200 Ga0500622_0003774 3300053156 Bacteria 9889
201 Ga0500661_000794 3300055283 Bacteria 5904
202 Ga0590071_005027 3300059421 Bacteria 3190
203 Ga0587062_002517 3300059639 Bacteria 1754

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046472 Ga0495580_0203511 Ga0495580_0203511_165_1349 381
2 3300046476 Ga0495662_0017788 Ga0495662_0017788_2241_3425 381
3 3300046642 Ga0495634_0155543 Ga0495634_0155543_247_1431 381
4 3300046810 Ga0495660_0072227 Ga0495660_0072227_23_1207 381
5 3300047319 Ga0495674_0102824 Ga0495674_0102824_1231_2415 381
6 3300047319 Ga0495674_0123449 Ga0495674_0123449_988_2172 381
7 3300047673 Ga0495593_0051302 Ga0495593_0051302_15_1199 381
8 3300050493 nmdc:mga0k408_139092_c1 nmdc:mga0k408_139092_c1_208_1434 393
9 3300005719 Ga0068861_100067715 Ga0068861_1000677154 402
10 3300026118 Ga0207675_100328137 Ga0207675_1003281372 402
11 3300042001 Ga0439441_008677 Ga0439441_008677_56_1444 412
12 3300006847 Ga0075431_100149126 Ga0075431_1001491262 418
13 3300050510 nmdc:mga06r32_131461_c1 nmdc:mga06r32_131461_c1_456_1862 418
14 3300028794 Ga0307515_10000067 Ga0307515_1000006774 421
15 3300046471 Ga0495650_0004476 Ga0495650_0004476_5765_7177 424
16 3300006353 Ga0075370_10036029 Ga0075370_100360291 428
17 3300050496 nmdc:mga07m45_14854_c2 nmdc:mga07m45_14854_c2_132_1538 428
18 3300047472 Ga0495686_0013128 Ga0495686_0013128_2313_3755 430
19 3300003322 rootL2_10024805 rootL2_100248052 434
20 3300031852 Ga0307410_10048722 Ga0307410_100487223 437
21 3300031852 Ga0307410_10081900 Ga0307410_100819002 437
22 3300031995 Ga0307409_100058721 Ga0307409_1000587212 437
23 3300031995 Ga0307409_100069734 Ga0307409_1000697342 437
24 3300031995 Ga0307409_100157309 Ga0307409_1001573091 437
25 3300044693 Ga0466961_0071788 Ga0466961_0071788_43_1482 437
26 3300044656 Ga0466969_0038198 Ga0466969_0038198_579_2018 438
27 3300046516 Ga0495628_0000074 Ga0495628_0000074_76960_78441 439
28 3300047471 Ga0495684_0009715 Ga0495684_0009715_5366_6847 439
29 3300028666 Ga0265336_10000006 Ga0265336_10000006194 440
30 3300029957 Ga0265324_10001393 Ga0265324_1000139311 440
31 3300046492 Ga0495585_0012521 Ga0495585_0012521_3484_4935 440
32 iso_pu_bacteria 2939631187 2939636814 440
33 3300037471 Ga0395905_0005726 Ga0395905_0005726_2509_3879 442
34 3300044765 Ga0466970_0030800 Ga0466970_0030800_1295_2731 442
35 3300044842 Ga0466957_0064026 Ga0466957_0064026_40_1476 442
36 3300005327 Ga0070658_10108356 Ga0070658_101083562 443
37 3300005445 Ga0070708_100095506 Ga0070708_1000955062 443
38 3300025940 Ga0207691_10028381 Ga0207691_100283815 443
39 3300031731 Ga0307405_10034584 Ga0307405_100345843 443
40 3300031852 Ga0307410_10002637 Ga0307410_100026375 443
41 3300031901 Ga0307406_10011104 Ga0307406_100111045 443
42 3300031995 Ga0307409_100014482 Ga0307409_1000144825 443
43 3300032005 Ga0307411_10011630 Ga0307411_100116303 443
44 3300037471 Ga0395905_0005964 Ga0395905_0005964_4451_5869 443
45 3300046506 Ga0495583_0000717 Ga0495583_0000717_6965_8407 443
46 3300046694 Ga0495649_0000314 Ga0495649_0000314_34073_35515 443
47 3300046794 Ga0495589_0003930 Ga0495589_0003930_5603_7045 443
48 3300049128 Ga0501308_000060 Ga0501308_000060_1008_2489 443
49 3300050508 nmdc:mga09592_74476_c1 nmdc:mga09592_74476_c1_1023_2429 443
50 iso_pu_bacteria 2858688981 2858695824 443
51 3300003322 rootL2_10011585 rootL2_100115855 444
52 3300046615 Ga0495656_0030162 Ga0495656_0030162_751_2136 444
53 3300025256 Ga0209759_1002485 Ga0209759_10024852 445
54 3300025913 Ga0207695_10066381 Ga0207695_100663814 445
55 3300025919 Ga0207657_10011718 Ga0207657_100117187 445
56 3300031456 Ga0307513_10002911 Ga0307513_1000291125 445
57 3300044735 Ga0466968_0059151 Ga0466968_0059151_287_1627 445
58 3300045051 Ga0451576_0091144 Ga0451576_0091144_157_1665 445
59 3300046525 Ga0495663_0025553 Ga0495663_0025553_86_1483 445
60 3300046615 Ga0495656_0047125 Ga0495656_0047125_194_1591 445
61 3300047445 Ga0495677_0032526 Ga0495677_0032526_185_1582 445
62 3300003323 rootH1_10016719 rootH1_1001671919 446
63 3300025913 Ga0207695_10035367 Ga0207695_100353671 446
64 3300053156 Ga0500622_0003774 Ga0500622_0003774_4440_5903 446
65 iso_pu_bacteria 2643221644 2644248031 446
66 3300025303 Ga0209051_1005664 Ga0209051_10056647 447
67 3300028794 Ga0307515_10016736 Ga0307515_100167368 447
68 3300032002 Ga0307416_100040960 Ga0307416_1000409603 447
69 iso_pu_bacteria 2643221585 2643933231 447
70 iso_pu_bacteria 2643221639 2644217447 447
71 iso_pu_bacteria 2643221646 2644258815 447
72 iso_pu_bacteria 2643221656 2644314480 447
73 iso_pu_bacteria 2738541337 2739055571 447
74 iso_pu_bacteria 2831864461 2831867045 447
75 3300005366 Ga0070659_100029774 Ga0070659_1000297744 448
76 3300005366 Ga0070659_100048106 Ga0070659_1000481063 448
77 3300005564 Ga0070664_100002824 Ga0070664_10000282412 448
78 3300025242 Ga0209258_100700 Ga0209258_1007005 448
79 3300025920 Ga0207649_10021272 Ga0207649_100212722 448
80 3300025932 Ga0207690_10017651 Ga0207690_100176512 448
81 3300025945 Ga0207679_10026815 Ga0207679_100268152 448
82 3300032004 Ga0307414_10004384 Ga0307414_100043847 448
83 3300032005 Ga0307411_10000124 Ga0307411_100001244 448
84 3300053080 Ga0500635_0000007 Ga0500635_0000007_121088_122536 448
85 3300053136 Ga0500559_0006617 Ga0500559_0006617_146_1585 448
86 3300031548 Ga0307408_100000040 Ga0307408_10000004017 449
87 3300031730 Ga0307516_10001515 Ga0307516_1000151526 449
88 3300003771 Ga0055526_1003116 Ga0055526_100311610 450
89 3300003794 Ga0055531_10000002 Ga0055531_1000000228 450
90 3300004625 Ga0055543_1001904 Ga0055543_10019045 450
91 3300005262 Ga0065165_1000059 Ga0065165_100005936 450
92 3300006944 Ga0099823_1003691 Ga0099823_10036919 450
93 3300025273 Ga0209673_1003701 Ga0209673_10037014 450
94 3300025295 Ga0209564_1000097 Ga0209564_100009751 450
95 3300025299 Ga0209256_1000529 Ga0209256_100052912 450
96 3300025303 Ga0209051_1001537 Ga0209051_100153712 450
97 3300025303 Ga0209051_1002924 Ga0209051_100292411 450
98 3300025304 Ga0209257_1000049 Ga0209257_100004965 450
99 3300025304 Ga0209257_1001826 Ga0209257_100182613 450
100 3300031730 Ga0307516_10000432 Ga0307516_1000043227 450
101 3300031730 Ga0307516_10120184 Ga0307516_101201842 450
102 3300035114 Ga0373939_0000221 Ga0373939_0000221_10469_11905 450
103 3300039447 Ga0436361_0229616 Ga0436361_0229616_93_1544 450
104 3300042121 Ga0450919_000509 Ga0450919_000509_2791_4194 450
105 3300042531 Ga0450918_000043 Ga0450918_000043_23147_24550 450
106 3300059421 Ga0590071_005027 Ga0590071_005027_1558_3021 450
107 3300003322 rootL2_10000892 rootL2_1000089214 451
108 3300003323 rootH1_10000812 rootH1_100008122 451
109 3300003761 Ga0055535_1000179 Ga0055535_100017944 451
110 3300003761 Ga0055535_1000282 Ga0055535_100028215 451
111 3300004625 Ga0055543_1010410 Ga0055543_10104101 451
112 3300005262 Ga0065165_1000378 Ga0065165_100037837 451
113 3300025242 Ga0209258_100258 Ga0209258_10025836 451
114 3300025254 Ga0209148_1006770 Ga0209148_10067703 451
115 3300025272 Ga0209455_1000092 Ga0209455_1000092168 451
116 3300025299 Ga0209256_1000075 Ga0209256_100007538 451
117 3300025909 Ga0207705_10125267 Ga0207705_101252672 451
118 3300027876 Ga0209974_10001211 Ga0209974_100012112 451
119 3300028786 Ga0307517_10052031 Ga0307517_100520311 451
120 3300028794 Ga0307515_10085227 Ga0307515_100852272 451
121 3300031507 Ga0307509_10000006 Ga0307509_10000006291 451
122 3300031507 Ga0307509_10046306 Ga0307509_100463062 451
123 3300031730 Ga0307516_10000414 Ga0307516_100004148 451
124 3300031730 Ga0307516_10000432 Ga0307516_1000043240 451
125 3300042000 Ga0439437_000884 Ga0439437_000884_924_2402 451
126 3300042118 Ga0450914_000190 Ga0450914_000190_689_2167 451
127 3300042127 Ga0450890_001861 Ga0450890_001861_906_2381 451
128 3300042129 Ga0450891_000142 Ga0450891_000142_3652_5130 451
129 3300046660 Ga0495625_0011453 Ga0495625_0011453_3970_5409 451
130 3300047472 Ga0495686_0004512 Ga0495686_0004512_6346_7740 451
131 3300049658 Ga0501211_000771 Ga0501211_000771_448_1926 451
132 3300049669 Ga0501235_003686 Ga0501235_003686_417_1895 451
133 3300049683 Ga0501253_000620 Ga0501253_000620_1026_2555 451
134 3300049704 Ga0501221_000787 Ga0501221_000787_1566_3044 451
135 3300049765 Ga0501268_003772 Ga0501268_003772_247_1725 451
136 3300055283 Ga0500661_000794 Ga0500661_000794_3399_4838 451
137 iso_pu_bacteria 2643221544 2643742918 451
138 iso_pu_bacteria 2734482258 2735817165 452
139 3300005467 Ga0070706_100003453 Ga0070706_10000345311 453
140 3300006852 Ga0075433_10003557 Ga0075433_1000355710 453
141 3300006871 Ga0075434_100005996 Ga0075434_1000059967 453
142 3300007076 Ga0075435_100166633 Ga0075435_1001666331 453
143 3300025910 Ga0207684_10017142 Ga0207684_100171423 453
144 3300045051 Ga0451576_0122976 Ga0451576_0122976_970_2406 453
145 3300050496 nmdc:mga07m45_14802_c1 nmdc:mga07m45_14802_c1_2278_3687 453
146 3300050512 nmdc:mga0n895_14512_c1 nmdc:mga0n895_14512_c1_3804_5240 453
147 3300050515 nmdc:mga0a205_26594_c1 nmdc:mga0a205_26594_c1_744_2180 453
148 3300005548 Ga0070665_100105127 Ga0070665_1001051274 454
149 3300005618 Ga0068864_100005108 Ga0068864_1000051082 454
150 3300006844 Ga0075428_100177301 Ga0075428_1001773011 454
151 3300009098 Ga0105245_10002716 Ga0105245_100027164 454
152 3300013297 Ga0157378_10238023 Ga0157378_102380232 454
153 3300013306 Ga0163162_10143527 Ga0163162_101435272 454
154 3300014968 Ga0157379_10069205 Ga0157379_100692052 454
155 3300025927 Ga0207687_10041838 Ga0207687_100418382 454
156 3300026023 Ga0207677_10012976 Ga0207677_100129767 454
157 3300026095 Ga0207676_10025689 Ga0207676_100256894 454
158 3300028379 Ga0268266_10042663 Ga0268266_100426634 454
159 3300031852 Ga0307410_10103996 Ga0307410_101039962 454
160 3300032002 Ga0307416_100072937 Ga0307416_1000729372 454
161 3300032005 Ga0307411_10093384 Ga0307411_100933842 454
162 3300006880 Ga0075429_100049191 Ga0075429_1000491913 455
163 3300049649 Ga0501198_000005 Ga0501198_000005_23433_24833 455
164 3300049662 Ga0501222_000003 Ga0501222_000003_24182_25582 455
165 iso_pu_bacteria 642555112 642596500 456
166 3300005467 Ga0070706_100002762 Ga0070706_1000027629 457
167 3300025922 Ga0207646_10034101 Ga0207646_100341013 457
168 3300006042 Ga0075368_10004896 Ga0075368_100048962 458
169 3300006353 Ga0075370_10028172 Ga0075370_100281721 458
170 3300025910 Ga0207684_10017296 Ga0207684_100172965 458
171 iso_pu_bacteria 2513237150 2513954768 462
172 iso_pu_bacteria 2513237165 2514043739 462
173 iso_pu_bacteria 2901300506 2901301291 462
174 iso_pu_bacteria 644736347 644752123 462
175 iso_pu_bacteria 2834641062 2834643069 463
176 iso_pu_bacteria 8003400568 8003404017 463
177 3300046472 Ga0495580_0003252 Ga0495580_0003252_6913_8322 464
178 3300046526 Ga0495666_0006420 Ga0495666_0006420_2491_3900 464
179 3300047317 Ga0495604_0005410 Ga0495604_0005410_3248_4657 464
180 3300003187 JGI25151J46595_10010625 JGI25151J46595_100106253 466
181 3300003771 Ga0055526_1000782 Ga0055526_10007825 466
182 3300006880 Ga0075429_100075101 Ga0075429_1000751012 466
183 3300025294 Ga0209025_1000123 Ga0209025_100012376 466
184 3300025295 Ga0209564_1000084 Ga0209564_100008449 466
185 3300025303 Ga0209051_1008445 Ga0209051_10084454 466
186 3300047318 Ga0495636_0001819 Ga0495636_0001819_2918_4318 466
187 3300049571 Ga0501034_0000056 Ga0501034_0000056_116989_118389 466
188 3300049649 Ga0501198_000005 Ga0501198_000005_46209_47648 466
189 3300049662 Ga0501222_000003 Ga0501222_000003_46958_48397 466
190 3300003187 JGI25151J46595_10000065 JGI25151J46595_100000655 467
191 3300003771 Ga0055526_1000670 Ga0055526_100067026 467
192 3300003773 Ga0055537_1001827 Ga0055537_10018273 467
193 3300003775 Ga0055524_1004930 Ga0055524_10049302 467
194 3300003781 Ga0055536_1000026 Ga0055536_100002690 467
195 3300003784 Ga0055534_1000093 Ga0055534_100009341 467
196 3300003784 Ga0055534_1000433 Ga0055534_10004337 467
197 3300006948 Ga0099826_10000036 Ga0099826_1000003622 467
198 3300025263 Ga0209565_1000145 Ga0209565_100014531 467
199 3300025263 Ga0209565_1003413 Ga0209565_10034132 467
200 3300025291 Ga0209675_1000026 Ga0209675_1000026111 467
201 3300025291 Ga0209675_1000139 Ga0209675_100013957 467
202 3300025291 Ga0209675_1004077 Ga0209675_10040778 467
203 3300025292 Ga0209676_1000059 Ga0209676_1000059194 467
204 3300025294 Ga0209025_1000066 Ga0209025_1000066135 467
205 3300025294 Ga0209025_1000159 Ga0209025_100015913 467
206 3300025294 Ga0209025_1000463 Ga0209025_100046326 467
207 3300025295 Ga0209564_1000161 Ga0209564_1000161104 467
208 3300025295 Ga0209564_1000851 Ga0209564_10008517 467
209 3300025299 Ga0209256_1000562 Ga0209256_100056220 467
210 3300025299 Ga0209256_1001729 Ga0209256_100172916 467
211 3300025303 Ga0209051_1008889 Ga0209051_10088893 467
212 3300027666 Ga0209282_1000155 Ga0209282_100015522 467
213 3300046474 Ga0495605_0002069 Ga0495605_0002069_4313_5716 467
214 3300046500 Ga0495596_0000564 Ga0495596_0000564_6304_7707 467
215 3300046501 Ga0495607_0003359 Ga0495607_0003359_6893_8296 467
216 3300046512 Ga0495610_0002061 Ga0495610_0002061_2018_3421 467
217 3300046513 Ga0495616_0003220 Ga0495616_0003220_5728_7131 467
218 3300046538 Ga0495609_0001227 Ga0495609_0001227_12305_13708 467
219 3300046692 Ga0495671_0002063 Ga0495671_0002063_10229_11632 467
220 3300048919 Ga0496116_0019576 Ga0496116_0019576_3483_4886 467
221 3300048919 Ga0496116_0048353 Ga0496116_0048353_1395_2798 467
222 3300048925 Ga0496122_0002901 Ga0496122_0002901_17680_19083 467
223 3300048926 Ga0496123_0003440 Ga0496123_0003440_4040_5443 467
224 3300059639 Ga0587062_002517 Ga0587062_002517_159_1562 467

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

171

338

0.98

PF02954

HTH_8

Bacterial regulatory protein, Fis family

463

504

0.97

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

172

342

0.96

PF00072

Response_reg

Response regulator receiver domain

34

143

0.96

PF07728

AAA_5

AAA domain (dynein-related subfamily)

194

330

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.966 140 371
6jdi-assembly1.cif.gz_A central domain of fleq h287n mutant in complex with atpgs and mg 0.9654 140 368
6jdl-assembly1.cif.gz_A central domain of fleq h287a mutant in complex with atpgs and mg 0.9638 140 368
6luf-assembly4.cif.gz_D trans-acting mutant y290a of the central aaa+ domain of the flagellar regulatory protein flrc 0.9608 140 375
5ep2-assembly1.cif.gz_A quorum-sensing signal integrator luxo - catalytic domain in complex with azau inhibitor 0.9522 142 375
ID Description Score Start End Superfamily
4l5eA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 1.008 401 444 1.10.10.60
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9712 139 307 3.40.50.300
af_P07604_193_369_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9665 137 310 3.40.50.300
3e7lC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9617 404 442 1.10.10.60
1ojlB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.961 139 311 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7C5Q6C3-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9846 138 311 GO:0005524
GO:0006355
GO:0016887
AF-A0A257VW85-F1-model_v4 Fis family transcriptional regulator 0.9766 140 353 GO:0005524
GO:0006355
GO:0016887
AF-A0A2V8ULU9-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9723 194 314 GO:0005524
GO:0006355
AF-A0A5C9AV88-F1-model_v4 Sigma-54-dependent transcriptional regulator 0.9686 139 380 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-A0A529FBT6-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9661 176 298 GO:0005524
GO:0006355

Feature Viewer

pLDDT pTM Quality
85.05 0.62 Medium
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Predicted Structure (AlphaFold2)

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