|
Taxon Oid |
3300042001
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Sorghum-associated microbial communities from plants grown in Nebraska, USA |
| Genome Name Sample Name |
Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300042001 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Sorghum-associated microbial communities from plants grown in Nebraska, USA |
| Img Release Pipeline Version |
IMG Annotation Pipeline v.5.0.20 |
| Img Submission Id |
242740 |
|
Gold Analysis Project Id
|
Ga0439441
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0490300
|
|
Gold Study Id
|
Gs0128848
|
| Add Date |
11/05/2020 00:00:00 |
| Assembly Method |
metaspades v. 3.14.1 |
| Comments |
released based on JGI ITS |
| Has Coverage |
True |
| Public Release Date |
01/04/2021 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Daniel Schachtman |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Daniel Schachtman; Jeff Dangl; Maria Harrison; Rebecca Bart |
| Contact Email |
[email protected] |
| Contact Name |
Daniel Schachtman |
| Award Doi |
10.46936/10.25585/60001066 |
| Funding Program |
CSP |
| Funding Year |
2016 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA697416 |
| Ncbi Biosample Accession |
SAMN17675278 |
| Sequencing Method |
Illumina NovaSeq S4 |
| Sequencing Quality |
Level 1: Standard Draft |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Altitude In Meters |
1198 |
| Elevation In Meters |
1198.000000 |
| Geographic Location |
USA: Nebraska |
| Habitat |
Rhizosphere |
| Isolation |
Sorghum rhizosphere |
| Isolation Country |
8855 |
| Latitude |
41.201 |
| Longitude |
-97.9447 |
| Sample Collection Date |
2017/8/16 |
| Host Name |
Sorghum bicolor |
| Genome Size Assembled |
397576107 |
| Gene Count Assembled |
1076596 |