F331893

General Info

Members Datasets Scaffolds Average Seq Length
220 164 198 300

Family's Representative Sequence

Representative Sequence 3300005355|Ga0070671_100000189|Ga0070671_10000018934
Length 298
Sequence LTDDRHLIAAFLEMMAAEAGAARNTLLAYERDLRGASELLGGDLGSATGEALKQLGAAWMPFKRATVARKAAALRRFFGFLVDEQHRADDPSAALPRPGTERSLPKVLDTGAVDALFREVERRCSEVGDSASLRLSALLELLYGSGLRASELMSLPRHAISPGKPFLILKGKGGRERLVPISDRAQQAVHNWAATVPRDSLWLFPSGKGHLTRVRLYQLIKEVGAAAGIPPDRISPHVLRHAFATHLLEGGADLRTLQMLLGHADIATTQIYTHVDSRRLIELVNSRHPLVDARAKHA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
3 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
4 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
5 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
6 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
7 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
8 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
9 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
10 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
11 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
12 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
13 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
14 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
15 2885429604 Sphingomonas sp. WZY 27 Isolate Rhizosphere
16 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
17 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
18 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
19 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
20 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
21 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
22 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
23 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
24 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
25 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
26 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
27 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
28 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
29 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
30 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
31 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
32 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
33 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
34 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
35 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
36 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
37 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
38 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
39 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
40 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
41 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
42 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
43 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
44 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
45 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
46 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
47 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
48 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
57 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
93 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
94 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
95 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
96 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
97 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
98 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
101 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
102 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
103 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
104 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
105 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
106 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
107 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
108 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
109 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
110 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
111 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
112 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
113 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
114 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
115 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
116 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
126 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
127 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
131 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
142 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
143 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
144 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
148 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
149 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
150 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
151 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
152 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
153 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
154 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
155 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
158 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
159 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
160 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
161 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
162 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
163 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
164 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 0
Isolates 10

Biome Distribution

Category Percentage (%)
Aerial Root 1.36
Bulb 0
Endosphere 15
Nodule 0
Rhizoplane 1.36
Rhizosphere 66.82
Stem 0
Stem Tuber 0
Unclassified 15.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2894763 2162886007 Bacteria 1892
2 JGI24741J21665_1001549 3300001915 Bacteria 6501
3 Ga0055532_1008185 3300003758 Bacteria 1313
4 Ga0055536_1002809 3300003781 Bacteria 9617
5 Ga0055536_1007345 3300003781 Bacteria 4951
6 Ga0055534_1013000 3300003784 Bacteria 1620
7 Ga0055530_10000149 3300003791 Bacteria 63152
8 Ga0055531_10002722 3300003794 Bacteria 11629
9 Ga0065165_1008374 3300005262 Bacteria 4853
10 Ga0065704_10107645 3300005289 Bacteria 2050
11 Ga0070670_100196332 3300005331 Bacteria 1753
12 Ga0070677_10024276 3300005333 Bacteria 2253
13 Ga0070666_10039658 3300005335 Bacteria 3140
14 Ga0068868_100000001 3300005338 Bacteria 282170
15 Ga0070660_100012794 3300005339 Bacteria 5999
16 Ga0070668_100000018 3300005347 Bacteria 99142
17 Ga0070668_100000047 3300005347 Bacteria 76386
18 Ga0070675_100029147 3300005354 Bacteria 4449
19 Ga0070671_100000189 3300005355 Bacteria 41536
20 Ga0070659_100000001 3300005366 Bacteria 576390
21 Ga0070667_100000030 3300005367 Bacteria 178327
22 Ga0070663_100067750 3300005455 Bacteria 2590
23 Ga0070686_100000338 3300005544 Bacteria 30239
24 Ga0070665_100000528 3300005548 Bacteria 53961
25 Ga0070665_100000531 3300005548 Bacteria 53926
26 Ga0070665_100029887 3300005548 Bacteria 5483
27 Ga0070665_100176106 3300005548 Bacteria 2140
28 Ga0070665_100427694 3300005548 Bacteria 1333
29 Ga0068863_100000049 3300005841 Bacteria 132539
30 Ga0068863_100007503 3300005841 Bacteria 10669
31 Ga0068860_100047136 3300005843 Bacteria 4108
32 Ga0068860_100307301 3300005843 Bacteria 1555
33 Ga0068862_100000347 3300005844 Bacteria 50091
34 Ga0075370_10089543 3300006353 Bacteria 1774
35 Ga0075434_100011271 3300006871 Bacteria 8421
36 Ga0111539_10081353 3300009094 Bacteria 3810
37 Ga0105245_10039099 3300009098 Bacteria 4222
38 Ga0105247_10008575 3300009101 Bacteria 6228
39 Ga0105249_10040572 3300009553 Bacteria 4228
40 Ga0163162_10073460 3300013306 Bacteria 3476
41 Ga0163161_10107442 3300017792 Bacteria 2083
42 Ga0213875_10002255 3300021388 Bacteria 11694
43 Ga0209147_103646 3300025229 Bacteria 2882
44 Ga0209675_1000135 3300025291 Bacteria 100154
45 Ga0209676_1000155 3300025292 Bacteria 165151
46 Ga0209676_1000932 3300025292 Bacteria 35988
47 Ga0209050_1000068 3300025298 Bacteria 298849
48 Ga0209050_1003917 3300025298 Bacteria 10539
49 Ga0209257_1001026 3300025304 Bacteria 37528
50 Ga0209257_1002325 3300025304 Bacteria 19181
51 Ga0207682_10027649 3300025893 Bacteria 2259
52 Ga0207680_10026119 3300025903 Bacteria 3233
53 Ga0207645_10089523 3300025907 Bacteria 1979
54 Ga0207671_10035299 3300025914 Bacteria 3712
55 Ga0207671_10077828 3300025914 Bacteria 2483
56 Ga0207657_10037134 3300025919 Bacteria 4355
57 Ga0207650_10117802 3300025925 Bacteria 2064
58 Ga0207659_10029644 3300025926 Bacteria 3732
59 Ga0207644_10000096 3300025931 Bacteria 63618
60 Ga0207690_10000018 3300025932 Bacteria 238992
61 Ga0207691_10162210 3300025940 Bacteria 1960
62 Ga0207661_10174409 3300025944 Bacteria 1874
63 Ga0207712_10054127 3300025961 Bacteria 2817
64 Ga0207668_10000066 3300025972 Bacteria 84452
65 Ga0207658_10000019 3300025986 Bacteria 206335
66 Ga0207677_10000013 3300026023 Bacteria 186519
67 Ga0207678_10096441 3300026067 Bacteria 2527
68 Ga0207641_10000029 3300026088 Bacteria 229383
69 Ga0207641_10002489 3300026088 Bacteria 17005
70 Ga0207641_10061788 3300026088 Bacteria 3195
71 Ga0268266_10000187 3300028379 Bacteria 110229
72 Ga0268266_10000910 3300028379 Bacteria 38152
73 Ga0268266_10113104 3300028379 Bacteria 2407
74 Ga0268266_10275583 3300028379 Bacteria 1563
75 Ga0268266_10478006 3300028379 Bacteria 1187
76 Ga0268265_10000295 3300028380 Bacteria 56143
77 Ga0268265_10094587 3300028380 Bacteria 2397
78 Ga0268264_10036900 3300028381 Bacteria 4028
79 Ga0268264_10603985 3300028381 Bacteria 1081
80 Ga0307405_10041220 3300031731 Bacteria 2801
81 Ga0307405_10056163 3300031731 Bacteria 2468
82 Ga0307413_10029141 3300031824 Bacteria 3085
83 Ga0307412_10000374 3300031911 Bacteria 27876
84 Ga0307412_10000446 3300031911 Bacteria 25035
85 Ga0307409_100029092 3300031995 Bacteria 3949
86 Ga0307409_100064757 3300031995 Bacteria 2873
87 Ga0307416_100340255 3300032002 Bacteria 1513
88 Ga0307416_100516110 3300032002 Bacteria 1262
89 Ga0307414_10000144 3300032004 Bacteria 48442
90 Ga0307414_10000204 3300032004 Bacteria 39795
91 Ga0307414_10003561 3300032004 Bacteria 8341
92 Ga0307414_10010690 3300032004 Bacteria 5343
93 Ga0307414_10068409 3300032004 Bacteria 2548
94 Ga0307414_10092250 3300032004 Bacteria 2254
95 Ga0307414_10093163 3300032004 Bacteria 2245
96 Ga0307414_10097896 3300032004 Bacteria 2199
97 Ga0307414_10102498 3300032004 Bacteria 2157
98 Ga0307411_10313504 3300032005 Bacteria 1263
99 Ga0307415_100154558 3300032126 Bacteria 1770
100 Ga0436364_0024756 3300037853 Bacteria 185423
101 Ga0395901_0168555 3300038443 Bacteria 2298
102 Ga0237819_01323 3300038705 Bacteria 6605
103 Ga0436363_0130471 3300039450 Bacteria 1242
104 Ga0439443_000121 3300042003 Bacteria 5107
105 Ga0439448_0018459 3300042005 Bacteria 2138
106 Ga0466966_0060853 3300044684 Bacteria 2383
107 Ga0466963_0002368 3300044694 Bacteria 10527
108 Ga0466971_0003147 3300044719 Bacteria 7035
109 Ga0466968_0025236 3300044735 Bacteria 2433
110 Ga0466958_0007862 3300045836 Bacteria 5891
111 Ga0466967_0022523 3300045976 Bacteria 5143
112 Ga0495627_000353 3300046453 Bacteria 43133
113 Ga0495638_0000011 3300046460 Bacteria 442453
114 Ga0495583_0000251 3300046506 Bacteria 88803
115 Ga0495616_0000032 3300046513 Bacteria 130692
116 Ga0495632_0000293 3300046519 Bacteria 48269
117 Ga0495632_0000609 3300046519 Bacteria 33106
118 Ga0495632_0047980 3300046519 Bacteria 2116
119 Ga0495637_0003888 3300046520 Bacteria 7834
120 Ga0495643_0000146 3300046522 Bacteria 114508
121 Ga0495648_0000036 3300046524 Bacteria 195997
122 Ga0495663_0000006 3300046525 Bacteria 306938
123 Ga0495633_0000410 3300046558 Bacteria 44691
124 Ga0495633_0001436 3300046558 Bacteria 18558
125 Ga0495633_0007802 3300046558 Bacteria 6115
126 Ga0495668_0044920 3300046616 Bacteria 2455
127 Ga0495670_0109547 3300046691 Bacteria 1428
128 Ga0495671_0000054 3300046692 Bacteria 115885
129 Ga0495671_0000100 3300046692 Bacteria 78876
130 Ga0495673_0000158 3300047469 Bacteria 116122
131 Ga0495681_0000110 3300047470 Bacteria 70960
132 Ga0496108_0000914 3300048911 Bacteria 22971
133 Ga0496110_0005533 3300048913 Bacteria 9919
134 Ga0496116_0043012 3300048919 Bacteria 3081
135 Ga0496116_0067227 3300048919 Bacteria 2290
136 Ga0496117_0033889 3300048920 Bacteria 3856
137 Ga0496118_0074546 3300048921 Bacteria 2425
138 Ga0496119_0111008 3300048922 Bacteria 1522
139 Ga0496120_0008351 3300048923 Bacteria 7533
140 Ga0496120_0047714 3300048923 Bacteria 2468
141 Ga0496121_0000296 3300048924 Bacteria 103215
142 Ga0496121_0002496 3300048924 Bacteria 27961
143 Ga0496122_0018346 3300048925 Bacteria 6473
144 Ga0496122_0072470 3300048925 Bacteria 2449
145 Ga0496123_0024871 3300048926 Bacteria 4533
146 Ga0496123_0027955 3300048926 Bacteria 4186
147 Ga0496123_0089631 3300048926 Bacteria 1831
148 Ga0496123_0150612 3300048926 Bacteria 1256
149 Ga0496124_0000054 3300048927 Bacteria 252172
150 Ga0496124_0000265 3300048927 Bacteria 101352
151 Ga0496124_0003663 3300048927 Bacteria 18582
152 Ga0496124_0018034 3300048927 Bacteria 6628
153 Ga0496124_0152962 3300048927 Bacteria 1807
154 Ga0496125_0011909 3300048928 Bacteria 8664
155 Ga0496125_0023663 3300048928 Bacteria 5665
156 Ga0496126_0007460 3300048929 Bacteria 11985
157 Ga0495678_015954 3300049459 Bacteria 3447
158 Ga0501031_0016987 3300049568 Bacteria 4728
159 Ga0501032_0034276 3300049569 Bacteria 3476
160 Ga0501034_0019039 3300049571 Bacteria 7033
161 Ga0501034_0030058 3300049571 Bacteria 5523
162 Ga0501034_0159336 3300049571 Bacteria 2229
163 Ga0501036_0035171 3300049572 Bacteria 4238
164 Ga0501037_0010673 3300049573 Bacteria 6750
165 Ga0501038_0138651 3300049574 Bacteria 1991
166 Ga0501043_0438185 3300049579 Bacteria 983
167 Ga0501047_0047504 3300049581 Bacteria 4146
168 Ga0501069_0035824 3300049585 Bacteria 2735
169 Ga0501070_0039017 3300049586 Bacteria 3963
170 Ga0501223_000070 3300049663 Bacteria 31069
171 Ga0501224_000012 3300049664 Bacteria 92585
172 Ga0501233_001778 3300049668 Bacteria 3726
173 Ga0501225_0000019 3300049705 Bacteria 59374
174 Ga0501035_0006189 3300049822 Bacteria 11257
175 Ga0501035_0221008 3300049822 Bacteria 1617
176 Ga0501044_0041595 3300049823 Bacteria 4784
177 Ga0501044_0459702 3300049823 Bacteria 1178
178 Ga0501226_000064 3300049853 Bacteria 35696
179 nmdc:mga07m45_113861_c1 3300050496 Bacteria 1559
180 nmdc:mga08y16_175736_c1 3300050511 Bacteria 2223
181 Ga0495655_0001849 3300053083 Bacteria 3299
182 Ga0500643_000887 3300053087 Bacteria 18945
183 Ga0500643_001285 3300053087 Bacteria 14800
184 Ga0500643_002525 3300053087 Bacteria 9365
185 Ga0500646_0010106 3300053090 Bacteria 2419
186 Ga0500556_0040023 3300053104 Bacteria 1646
187 Ga0500562_021712 3300053108 Bacteria 1671
188 Ga0500592_006202 3300053116 Bacteria 1903
189 Ga0500559_0002156 3300053136 Bacteria 10457
190 Ga0500568_0002835 3300053139 Bacteria 9998
191 Ga0500573_0150723 3300053140 Bacteria 1274
192 Ga0500588_0054255 3300053146 Bacteria 1262
193 Ga0500604_0000003 3300053151 Bacteria 148800
194 Ga0500616_0000087 3300053153 Bacteria 192225
195 Ga0500627_0000015 3300053158 Bacteria 132947
196 Ga0500627_0001012 3300053158 Bacteria 7659
197 Ga0500645_001058 3300053730 Bacteria 15269
198 Ga0466962_0009495 3300061719 Bacteria 4665

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026088 Ga0207641_10061788 Ga0207641_100617882 254
2 3300046460 Ga0495638_0000011 Ga0495638_0000011_24205_25101 268
3 3300046506 Ga0495583_0000251 Ga0495583_0000251_23687_24583 268
4 3300046519 Ga0495632_0000293 Ga0495632_0000293_31439_32335 268
5 3300046524 Ga0495648_0000036 Ga0495648_0000036_24059_24955 268
6 3300046558 Ga0495633_0007802 Ga0495633_0007802_4907_5803 268
7 3300046692 Ga0495671_0000054 Ga0495671_0000054_23706_24602 268
8 3300047469 Ga0495673_0000158 Ga0495673_0000158_23943_24839 268
9 3300013306 Ga0163162_10073460 Ga0163162_100734605 270
10 3300039450 Ga0436363_0130471 Ga0436363_0130471_241_1146 272
11 3300021388 Ga0213875_10002255 Ga0213875_1000225511 273
12 3300037853 Ga0436364_0024756 Ga0436364_0024756_166018_166965 273
13 3300048926 Ga0496123_0024871 Ga0496123_0024871_3193_4104 275
14 3300048926 Ga0496123_0027955 Ga0496123_0027955_1201_2112 275
15 3300048927 Ga0496124_0000265 Ga0496124_0000265_748_1659 275
16 3300031911 Ga0307412_10000446 Ga0307412_1000044620 276
17 3300048923 Ga0496120_0008351 Ga0496120_0008351_4634_5545 276
18 3300048927 Ga0496124_0000054 Ga0496124_0000054_16906_17817 276
19 3300005544 Ga0070686_100000338 Ga0070686_1000003386 278
20 3300001915 JGI24741J21665_1001549 JGI24741J21665_10015493 279
21 3300025940 Ga0207691_10162210 Ga0207691_101622102 279
22 3300006871 Ga0075434_100011271 Ga0075434_1000112718 281
23 3300025944 Ga0207661_10174409 Ga0207661_101744092 282
24 3300025914 Ga0207671_10035299 Ga0207671_100352992 285
25 3300048926 Ga0496123_0089631 Ga0496123_0089631_782_1693 285
26 3300048927 Ga0496124_0003663 Ga0496124_0003663_16845_17756 285
27 3300032004 Ga0307414_10102498 Ga0307414_101024982 288
28 3300032004 Ga0307414_10003561 Ga0307414_100035613 289
29 3300032004 Ga0307414_10068409 Ga0307414_100684092 289
30 3300025292 Ga0209676_1000155 Ga0209676_10001554 290
31 3300025298 Ga0209050_1003917 Ga0209050_10039179 290
32 3300003781 Ga0055536_1007345 Ga0055536_10073451 291
33 3300032002 Ga0307416_100340255 Ga0307416_1003402552 291
34 3300032126 Ga0307415_100154558 Ga0307415_1001545582 292
35 3300053083 Ga0495655_0001849 Ga0495655_0001849_595_1479 292
36 3300025914 Ga0207671_10077828 Ga0207671_100778283 293
37 3300044684 Ga0466966_0060853 Ga0466966_0060853_696_1601 293
38 3300044735 Ga0466968_0025236 Ga0466968_0025236_724_1629 293
39 3300049571 Ga0501034_0159336 Ga0501034_0159336_498_1412 293
40 3300049585 Ga0501069_0035824 Ga0501069_0035824_1267_2181 293
41 3300049586 Ga0501070_0039017 Ga0501070_0039017_275_1189 293
42 3300005455 Ga0070663_100067750 Ga0070663_1000677502 294
43 3300026067 Ga0207678_10096441 Ga0207678_100964413 294
44 3300032002 Ga0307416_100516110 Ga0307416_1005161102 294
45 3300042005 Ga0439448_0018459 Ga0439448_0018459_1014_1922 294
46 3300046691 Ga0495670_0109547 Ga0495670_0109547_356_1252 294
47 3300049568 Ga0501031_0016987 Ga0501031_0016987_19_921 294
48 3300049569 Ga0501032_0034276 Ga0501032_0034276_2238_3140 294
49 3300049571 Ga0501034_0030058 Ga0501034_0030058_77_979 294
50 3300049572 Ga0501036_0035171 Ga0501036_0035171_70_972 294
51 3300049573 Ga0501037_0010673 Ga0501037_0010673_5836_6738 294
52 3300049574 Ga0501038_0138651 Ga0501038_0138651_694_1596 294
53 3300049579 Ga0501043_0438185 Ga0501043_0438185_44_946 294
54 3300049581 Ga0501047_0047504 Ga0501047_0047504_385_1287 294
55 3300049822 Ga0501035_0006189 Ga0501035_0006189_5628_6530 294
56 3300049822 Ga0501035_0221008 Ga0501035_0221008_477_1379 294
57 3300049823 Ga0501044_0041595 Ga0501044_0041595_3312_4214 294
58 3300049823 Ga0501044_0459702 Ga0501044_0459702_21_923 294
59 3300053087 Ga0500643_000887 Ga0500643_000887_10262_11158 294
60 3300053136 Ga0500559_0002156 Ga0500559_0002156_5472_6368 294
61 3300032004 Ga0307414_10092250 Ga0307414_100922502 295
62 3300005333 Ga0070677_10024276 Ga0070677_100242762 296
63 3300005338 Ga0068868_100000001 Ga0068868_100000001110 296
64 3300005339 Ga0070660_100012794 Ga0070660_1000127942 296
65 3300005354 Ga0070675_100029147 Ga0070675_1000291475 296
66 3300005366 Ga0070659_100000001 Ga0070659_100000001248 296
67 3300025893 Ga0207682_10027649 Ga0207682_100276492 296
68 3300025907 Ga0207645_10089523 Ga0207645_100895232 296
69 3300025919 Ga0207657_10037134 Ga0207657_100371342 296
70 3300025926 Ga0207659_10029644 Ga0207659_100296444 296
71 3300025932 Ga0207690_10000018 Ga0207690_1000001820 296
72 3300026023 Ga0207677_10000013 Ga0207677_1000001389 296
73 3300032004 Ga0307414_10010690 Ga0307414_100106903 296
74 3300005347 Ga0070668_100000018 Ga0070668_10000001817 297
75 3300005355 Ga0070671_100000189 Ga0070671_10000018934 297
76 3300009098 Ga0105245_10039099 Ga0105245_100390995 297
77 3300009553 Ga0105249_10040572 Ga0105249_100405722 297
78 3300025931 Ga0207644_10000096 Ga0207644_1000009635 297
79 3300025961 Ga0207712_10054127 Ga0207712_100541272 297
80 3300028380 Ga0268265_10094587 Ga0268265_100945872 297
81 3300031911 Ga0307412_10000374 Ga0307412_1000037426 297
82 3300032004 Ga0307414_10000144 Ga0307414_1000014418 297
83 3300032005 Ga0307411_10313504 Ga0307411_103135041 297
84 3300038443 Ga0395901_0168555 Ga0395901_0168555_1230_2129 297
85 3300049571 Ga0501034_0019039 Ga0501034_0019039_3551_4447 297
86 3300049663 Ga0501223_000070 Ga0501223_000070_20545_21441 297
87 3300049664 Ga0501224_000012 Ga0501224_000012_37944_38840 297
88 3300049668 Ga0501233_001778 Ga0501233_001778_807_1703 297
89 3300049705 Ga0501225_0000019 Ga0501225_0000019_37888_38784 297
90 3300049853 Ga0501226_000064 Ga0501226_000064_4792_5688 297
91 3300053108 Ga0500562_021712 Ga0500562_021712_611_1507 297
92 iso_pu_bacteria 2599185359 2600225050 297
93 iso_pu_bacteria 2818991466 2819713323 297
94 iso_pu_bacteria 2852653556 2852656526 297
95 iso_pu_bacteria 2852680915 2852684753 297
96 iso_pu_bacteria 2928526807 2928527803 297
97 iso_pu_bacteria 2928968154 2928971569 297
98 3300005262 Ga0065165_1008374 Ga0065165_10083742 298
99 3300005331 Ga0070670_100196332 Ga0070670_1001963322 298
100 3300005335 Ga0070666_10039658 Ga0070666_100396583 298
101 3300005347 Ga0070668_100000047 Ga0070668_10000004739 298
102 3300005367 Ga0070667_100000030 Ga0070667_100000030108 298
103 3300005548 Ga0070665_100176106 Ga0070665_1001761062 298
104 3300005548 Ga0070665_100427694 Ga0070665_1004276942 298
105 3300005841 Ga0068863_100000049 Ga0068863_100000049126 298
106 3300005843 Ga0068860_100307301 Ga0068860_1003073012 298
107 3300025903 Ga0207680_10026119 Ga0207680_100261192 298
108 3300025925 Ga0207650_10117802 Ga0207650_101178022 298
109 3300025972 Ga0207668_10000066 Ga0207668_1000006645 298
110 3300025986 Ga0207658_10000019 Ga0207658_10000019109 298
111 3300026088 Ga0207641_10000029 Ga0207641_10000029125 298
112 3300028379 Ga0268266_10275583 Ga0268266_102755832 298
113 3300028379 Ga0268266_10478006 Ga0268266_104780061 298
114 3300028381 Ga0268264_10603985 Ga0268264_106039851 298
115 3300031731 Ga0307405_10041220 Ga0307405_100412203 298
116 3300046513 Ga0495616_0000032 Ga0495616_0000032_38347_39243 298
117 3300046616 Ga0495668_0044920 Ga0495668_0044920_1053_1949 298
118 3300048928 Ga0496125_0023663 Ga0496125_0023663_4325_5254 298
119 3300053158 Ga0500627_0001012 Ga0500627_0001012_3396_4292 298
120 iso_pu_bacteria 2928027323 2928027666 298
121 iso_pu_bacteria 2984555340 2984558040 298
122 iso_pu_bacteria 2984564862 2984567592 298
123 iso_pu_bacteria 2993356040 2993358645 298
124 iso_pu_bacteria 2643221563 2643832903 299
125 iso_pu_bacteria 2643221608 2644053302 299
126 3300044694 Ga0466963_0002368 Ga0466963_0002368_3999_4928 300
127 3300044719 Ga0466971_0003147 Ga0466971_0003147_844_1773 300
128 3300045836 Ga0466958_0007862 Ga0466958_0007862_3340_4269 300
129 3300045976 Ga0466967_0022523 Ga0466967_0022523_1126_2055 300
130 3300061719 Ga0466962_0009495 Ga0466962_0009495_3046_3975 300
131 iso_pu_bacteria 2879163058 2879164882 300
132 3300005548 Ga0070665_100000531 Ga0070665_10000053150 301
133 3300006353 Ga0075370_10089543 Ga0075370_100895432 301
134 3300009094 Ga0111539_10081353 Ga0111539_100813533 301
135 3300028379 Ga0268266_10000187 Ga0268266_1000018750 301
136 3300031995 Ga0307409_100029092 Ga0307409_1000290923 301
137 3300042003 Ga0439443_000121 Ga0439443_000121_1981_2895 301
138 3300050496 nmdc:mga07m45_113861_c1 nmdc:mga07m45_113861_c1_286_1203 301
139 3300050511 nmdc:mga08y16_175736_c1 nmdc:mga08y16_175736_c1_814_1728 301
140 3300053104 Ga0500556_0040023 Ga0500556_0040023_409_1326 301
141 3300053139 Ga0500568_0002835 Ga0500568_0002835_8204_9121 301
142 3300053146 Ga0500588_0054255 Ga0500588_0054255_197_1114 301
143 3300053153 Ga0500616_0000087 Ga0500616_0000087_164191_165108 301
144 3300053730 Ga0500645_001058 Ga0500645_001058_8593_9510 301
145 iso_pu_bacteria 2775507255 2778124640 301
146 iso_pu_bacteria 2808606401 2809062886 301
147 iso_pu_bacteria 2808606404 2809078850 301
148 iso_pu_bacteria 2808606405 2809085910 301
149 iso_pu_bacteria 2919709256 2919709604 301
150 iso_pu_bacteria 2946787523 2946788008 301
151 3300005843 Ga0068860_100047136 Ga0068860_1000471363 302
152 3300025304 Ga0209257_1001026 Ga0209257_100102621 302
153 3300028381 Ga0268264_10036900 Ga0268264_100369002 302
154 3300031731 Ga0307405_10056163 Ga0307405_100561632 302
155 3300031824 Ga0307413_10029141 Ga0307413_100291413 302
156 3300031995 Ga0307409_100064757 Ga0307409_1000647573 302
157 3300032004 Ga0307414_10093163 Ga0307414_100931632 302
158 3300053140 Ga0500573_0150723 Ga0500573_0150723_179_1096 302
159 iso_pu_bacteria 2643221560 2643819728 302
160 iso_pu_bacteria 2880518877 2880520165 302
161 3300003781 Ga0055536_1002809 Ga0055536_10028093 303
162 3300003784 Ga0055534_1013000 Ga0055534_10130001 303
163 3300003791 Ga0055530_10000149 Ga0055530_100001495 303
164 3300003794 Ga0055531_10002722 Ga0055531_1000272211 303
165 3300005548 Ga0070665_100000528 Ga0070665_10000052817 303
166 3300005841 Ga0068863_100007503 Ga0068863_10000750311 303
167 3300005844 Ga0068862_100000347 Ga0068862_10000034715 303
168 3300009101 Ga0105247_10008575 Ga0105247_100085752 303
169 3300025291 Ga0209675_1000135 Ga0209675_1000135109 303
170 3300025292 Ga0209676_1000932 Ga0209676_100093213 303
171 3300025298 Ga0209050_1000068 Ga0209050_1000068262 303
172 3300025304 Ga0209257_1002325 Ga0209257_10023254 303
173 3300026088 Ga0207641_10002489 Ga0207641_1000248910 303
174 3300028379 Ga0268266_10000910 Ga0268266_1000091022 303
175 3300028380 Ga0268265_10000295 Ga0268265_1000029515 303
176 3300053090 Ga0500646_0010106 Ga0500646_0010106_535_1491 303
177 3300053116 Ga0500592_006202 Ga0500592_006202_381_1310 303
178 3300053151 Ga0500604_0000003 Ga0500604_0000003_80550_81506 303
179 3300053158 Ga0500627_0000015 Ga0500627_0000015_67893_68822 303
180 3300038705 Ga0237819_01323 Ga0237819_01323_2340_3269 304
181 3300048924 Ga0496121_0000296 Ga0496121_0000296_15548_16501 304
182 3300053087 Ga0500643_001285 Ga0500643_001285_4659_5588 304
183 3300053087 Ga0500643_002525 Ga0500643_002525_2568_3497 304
184 iso_pu_bacteria 2885429604 2885429970 304
185 2162886007 SwRhRL2b_contig_2894763 SwRhRL2b_0992.00001940 305
186 3300003758 Ga0055532_1008185 Ga0055532_10081852 305
187 3300005289 Ga0065704_10107645 Ga0065704_101076452 305
188 3300005548 Ga0070665_100029887 Ga0070665_1000298876 305
189 3300017792 Ga0163161_10107442 Ga0163161_101074422 305
190 3300025229 Ga0209147_103646 Ga0209147_1036462 305
191 3300028379 Ga0268266_10113104 Ga0268266_101131042 305
192 3300032004 Ga0307414_10000204 Ga0307414_1000020415 305
193 3300032004 Ga0307414_10097896 Ga0307414_100978962 305
194 3300046453 Ga0495627_000353 Ga0495627_000353_9206_10138 305
195 3300046519 Ga0495632_0000609 Ga0495632_0000609_18971_19903 305
196 3300046519 Ga0495632_0047980 Ga0495632_0047980_542_1474 305
197 3300046520 Ga0495637_0003888 Ga0495637_0003888_6634_7566 305
198 3300046522 Ga0495643_0000146 Ga0495643_0000146_46833_47765 305
199 3300046525 Ga0495663_0000006 Ga0495663_0000006_186962_187894 305
200 3300046558 Ga0495633_0000410 Ga0495633_0000410_31424_32356 305
201 3300046558 Ga0495633_0001436 Ga0495633_0001436_15237_16169 305
202 3300046692 Ga0495671_0000100 Ga0495671_0000100_41451_42383 305
203 3300047470 Ga0495681_0000110 Ga0495681_0000110_60976_61908 305
204 3300048911 Ga0496108_0000914 Ga0496108_0000914_21630_22547 305
205 3300048913 Ga0496110_0005533 Ga0496110_0005533_1530_2447 305
206 3300048919 Ga0496116_0043012 Ga0496116_0043012_1098_2015 305
207 3300048919 Ga0496116_0067227 Ga0496116_0067227_1000_1917 305
208 3300048920 Ga0496117_0033889 Ga0496117_0033889_296_1213 305
209 3300048921 Ga0496118_0074546 Ga0496118_0074546_816_1733 305
210 3300048922 Ga0496119_0111008 Ga0496119_0111008_369_1286 305
211 3300048923 Ga0496120_0047714 Ga0496120_0047714_504_1421 305
212 3300048924 Ga0496121_0002496 Ga0496121_0002496_17563_18480 305
213 3300048925 Ga0496122_0018346 Ga0496122_0018346_40_957 305
214 3300048925 Ga0496122_0072470 Ga0496122_0072470_1202_2149 305
215 3300048926 Ga0496123_0150612 Ga0496123_0150612_213_1130 305
216 3300048927 Ga0496124_0018034 Ga0496124_0018034_3333_4250 305
217 3300048927 Ga0496124_0152962 Ga0496124_0152962_449_1366 305
218 3300048928 Ga0496125_0011909 Ga0496125_0011909_6618_7535 305
219 3300048929 Ga0496126_0007460 Ga0496126_0007460_7294_8211 305
220 3300049459 Ga0495678_015954 Ga0495678_015954_394_1326 305

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

106

279

0.91

PF02899

Phage_int_SAM_1

Phage integrase, N-terminal SAM-like domain

8

85

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2kd1-assembly1.cif.gz_A solution nmr structure of the integrase-like domain from bacillus cereus ordered locus bc_1272. northeast structural genomics consortium target bcr268f 0.8259 4 99
3lys-assembly6.cif.gz_F crystal structure of the n-terminal domain of the prophage pi2 protein 01 (integrase) from lactococcus lactis, northeast structural genomics consortium target kr124f 0.7748 5 92
5dcf-assembly1.cif.gz_A c-terminal domain of xerd recombinase in complex with gamma domain of ftsk 0.7239 107 290
2kob-assembly1.cif.gz_A solution nmr structure of clolep_01837 (fragment 61-160) from clostridium leptum. northeast structural genomics consortium target qlr8a 0.7215 5 102
2kd1-assembly1.cif.gz_A solution nmr structure of the integrase-like domain from bacillus cereus ordered locus bc_1272. northeast structural genomics consortium target bcr268f 0.6818 4 99
ID Description Score Start End Superfamily
af_P9WF33_5_106_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8985 6 91 1.10.150.130
af_P0A8P6_5_99_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8826 6 91 1.10.150.130
af_P9WF35_2_96_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8798 6 92 1.10.150.130
af_Q2FY74_2_96_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8478 6 91 1.10.150.130
1a0pA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8262 4 94 1.10.150.130
ID Description Score Start End GO Terms
AF-A0A520HPQ0-F1-model_v4 Recombinase XerD 0.8439 106 297 GO:0003677
GO:0006310
GO:0015074
AF-A0A537YDF7-F1-model_v4 Recombinase XerD 0.8408 4 252 GO:0003677
GO:0006310
GO:0015074
AF-A0A520HPQ0-F1-model_v4 Recombinase XerD 0.8366 106 297 GO:0003677
GO:0006310
GO:0015074
AF-A0A7V8HI50-F1-model_v4 deleted 0.8174 1 125
AF-A0A7V8HI50-F1-model_v4 deleted 0.811 1 125

Feature Viewer

pLDDT pTM Quality
81.13 0.62 Medium
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Predicted Structure (AlphaFold2)

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