F314157

General Info

Members Datasets Scaffolds Average Seq Length
205 156 186 338

Family's Representative Sequence

Representative Sequence 3300041413|Ga0439465_0000705|Ga0439465_0000705_8097_9206
Length 369
Sequence MEKVLLFVKKAVKNINWKIIKFQKFKIQMSEKIKFAVVGCGHIGKRHAEMITRNEECELVALIDVAEKSSLNIDNYNVPFFKSLDDFLNSGLEVDVINIASPNGFHFEQAYKAIDAGKHVVVEKPMALNKQHAEKLIFQALHKHKQVFAVMQNRYSPPSVWIKEMIESGKLGKIYMVQLNCYWNRDNRYYKPESWHGKKELDGGTLFTQFSHFIDIMYWLFGDITNIQAKFEDFNHKDLTDFEDSGFVNFDFVNGGMGSLNYSTSVWNQNLESSMTIIAENGAVKIGGQYMDKVEACNVKDYVMPELAPTNPGNDYGAYKGSAANHHYIIENVVDVLKGRNSITTNALEGLKVVDIIERIYALKKTDKM

Samples

Sample ID Description Type Environment
1 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
2 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
3 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
4 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
5 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
6 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
7 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
8 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
9 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
10 2738541283 Pedobacter sp. OK701 Isolate Unclassified
11 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
12 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
13 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
14 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
15 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
16 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
17 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
18 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
19 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
20 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
21 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
22 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
24 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
25 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
26 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
27 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
28 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
29 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
30 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
31 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
34 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
35 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
36 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
37 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
38 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
39 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
40 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
43 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
44 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
45 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
48 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
49 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
50 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
51 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
52 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
54 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
56 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
59 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
65 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
69 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
70 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
71 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
72 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
73 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
74 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
75 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
103 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
104 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
105 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
106 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
107 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
108 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
109 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
110 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
111 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
112 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
115 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
116 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
117 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
118 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
125 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
126 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
127 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
128 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
129 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
130 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
131 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
132 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
133 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
134 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
135 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
142 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
143 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
144 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
145 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
146 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
147 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
148 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
150 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
151 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
152 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
153 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
154 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
155 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
156 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.24
Metatranscriptomes 0.49
Isolates 9.27

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.68
Nodule 0.49
Rhizoplane 0.49
Rhizosphere 70.24
Stem 0
Stem Tuber 0
Unclassified 16.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1001079 3300002739 Bacteria 4956
2 JGI25159J45721_1006440 3300002987 Bacteria 3512
3 JGI25406J46586_10001952 3300003203 Bacteria 9747
4 rootH2_10057841 3300003320 Unclassified 2353
5 rootH2_10062717 3300003320 Bacteria 5882
6 rootL2_10014286 3300003322 Bacteria 5976
7 rootL2_10072994 3300003322 Bacteria 1303
8 rootL2_10193512 3300003322 Unclassified 2814
9 rootH1_10193381 3300003323 Bacteria 6341
10 JGI25160J50197_1003075 3300003354 Bacteria 7609
11 Ga0006562J51391_1065498 3300003578 Bacteria 3360
12 Ga0055526_1000270 3300003771 Bacteria 43854
13 Ga0055534_1006854 3300003784 Bacteria 2806
14 Ga0055528_1000108 3300003790 Bacteria 66828
15 Ga0055530_10000279 3300003791 Bacteria 46371
16 Ga0055531_10000003 3300003794 Bacteria 274424
17 Ga0065714_10071670 3300005288 Bacteria 3519
18 Ga0065714_10076565 3300005288 Bacteria 2778
19 Ga0070658_10119831 3300005327 Bacteria 2186
20 Ga0070658_10374925 3300005327 Bacteria 1220
21 Ga0070683_100000849 3300005329 Bacteria 22644
22 Ga0070683_100027057 3300005329 Bacteria 5169
23 Ga0070670_100064641 3300005331 Bacteria 3139
24 Ga0070682_100000111 3300005337 Bacteria 72333
25 Ga0070682_100007134 3300005337 Bacteria 6294
26 Ga0070661_100160116 3300005344 Bacteria 1704
27 Ga0070668_100083783 3300005347 Bacteria 2503
28 Ga0070675_100069821 3300005354 Bacteria 2911
29 Ga0070659_100004177 3300005366 Bacteria 10298
30 Ga0070659_100020715 3300005366 Bacteria 5000
31 Ga0070667_100001259 3300005367 Bacteria 22986
32 Ga0070667_100065126 3300005367 Bacteria 3094
33 Ga0070678_100064872 3300005456 Bacteria 2709
34 Ga0070684_100253692 3300005535 Bacteria 1608
35 Ga0068853_100044836 3300005539 Bacteria 3787
36 Ga0068852_100138307 3300005616 Bacteria 2251
37 Ga0068852_100226155 3300005616 Bacteria 1782
38 Ga0068859_100033264 3300005617 Bacteria 5178
39 Ga0068864_100248889 3300005618 Bacteria 1649
40 Ga0068860_100072051 3300005843 Bacteria 3283
41 Ga0081539_10001653 3300005985 Bacteria 36134
42 Ga0070712_100032904 3300006175 Bacteria 3504
43 Ga0097621_100000503 3300006237 Bacteria 27338
44 Ga0068871_100009454 3300006358 Bacteria 7065
45 Ga0097620_100033264 3300006931 Bacteria 5178
46 Ga0105244_10000001 3300009036 Bacteria 1034899
47 Ga0105240_10094131 3300009093 Bacteria 3655
48 Ga0105243_10041844 3300009148 Bacteria 3584
49 Ga0105237_10001614 3300009545 Bacteria 29283
50 Ga0105237_10036222 3300009545 Bacteria 4991
51 Ga0105239_10000026 3300010375 Bacteria 248302
52 Ga0105239_10000255 3300010375 Bacteria 79421
53 Ga0157373_10011658 3300013100 Bacteria 6454
54 Ga0157371_10001072 3300013102 Bacteria 29848
55 Ga0157371_10016889 3300013102 Bacteria 5434
56 Ga0157371_10037106 3300013102 Bacteria 3489
57 Ga0157370_10000552 3300013104 Bacteria 46652
58 Ga0157370_10004710 3300013104 Bacteria 15549
59 Ga0157370_10005493 3300013104 Bacteria 14214
60 Ga0157370_10046246 3300013104 Bacteria 4173
61 Ga0157369_10081939 3300013105 Bacteria 3453
62 Ga0157378_10016410 3300013297 Bacteria 6484
63 Ga0157378_10066898 3300013297 Bacteria 3219
64 Ga0157378_10068022 3300013297 Bacteria 3193
65 Ga0163162_10000834 3300013306 Bacteria 28679
66 Ga0163162_10003569 3300013306 Bacteria 14879
67 Ga0163162_10144612 3300013306 Bacteria 2493
68 Ga0163162_10367477 3300013306 Bacteria 1572
69 Ga0157372_10098423 3300013307 Bacteria 3337
70 Ga0157372_10126967 3300013307 Bacteria 2933
71 Ga0157375_10000220 3300013308 Bacteria 53557
72 Ga0157375_10005044 3300013308 Bacteria 11468
73 Ga0157375_10038230 3300013308 Unclassified 4607
74 Ga0157375_10099830 3300013308 Bacteria 2982
75 Ga0163163_10000215 3300014325 Bacteria 60028
76 Ga0163163_10585961 3300014325 Unclassified 1178
77 Ga0157379_10038569 3300014968 Bacteria 4262
78 Ga0157379_10094971 3300014968 Bacteria 2675
79 Ga0157376_10000216 3300014969 Bacteria 39942
80 Ga0157376_10230144 3300014969 Bacteria 1721
81 Ga0182006_1000003 3300015261 Bacteria 826681
82 Ga0163161_10017377 3300017792 Bacteria 5033
83 Ga0163161_10052311 3300017792 Unclassified 2960
84 Ga0213876_10205359 3300021384 Bacteria 1047
85 Ga0209436_100146 3300025208 Bacteria 34185
86 Ga0209436_100762 3300025208 Bacteria 13344
87 Ga0209673_1000183 3300025273 Bacteria 126175
88 Ga0209130_1000857 3300025284 Bacteria 25201
89 Ga0209675_1000053 3300025291 Bacteria 194511
90 Ga0209564_1000561 3300025295 Bacteria 59357
91 Ga0209564_1034617 3300025295 Bacteria 1478
92 Ga0209050_1001554 3300025298 Bacteria 23942
93 Ga0207426_1000033 3300025302 Bacteria 455976
94 Ga0207426_1001332 3300025302 Bacteria 20979
95 Ga0207426_1005428 3300025302 Bacteria 5817
96 Ga0209257_1000008 3300025304 Bacteria 1294570
97 Ga0207655_1000013 3300025728 Bacteria 637510
98 Ga0207707_10125365 3300025912 Unclassified 2246
99 Ga0207695_10148571 3300025913 Bacteria 2284
100 Ga0207671_10006642 3300025914 Bacteria 10253
101 Ga0207671_10166020 3300025914 Bacteria 1712
102 Ga0207657_10071843 3300025919 Bacteria 2929
103 Ga0207649_10009885 3300025920 Bacteria 5228
104 Ga0207652_10063093 3300025921 Bacteria 3204
105 Ga0207650_10046455 3300025925 Bacteria 3197
106 Ga0207690_10017224 3300025932 Bacteria 4408
107 Ga0207690_10117503 3300025932 Bacteria 1925
108 Ga0207706_10000817 3300025933 Bacteria 32335
109 Ga0207661_10002359 3300025944 Bacteria 13003
110 Ga0207667_10047038 3300025949 Bacteria 4568
111 Ga0207651_10095259 3300025960 Bacteria 2192
112 Ga0207712_10025074 3300025961 Unclassified 3958
113 Ga0207658_10030417 3300025986 Bacteria 3822
114 Ga0207658_10032346 3300025986 Bacteria 3723
115 Ga0207702_10045901 3300026078 Bacteria 3676
116 Ga0207641_10162235 3300026088 Bacteria 2033
117 Ga0207683_10441490 3300026121 Bacteria 1199
118 Ga0207698_10019635 3300026142 Bacteria 4632
119 Ga0268264_10098520 3300028381 Bacteria 2535
120 Ga0307511_10001417 3300030521 Bacteria 25271
121 Ga0316176_1040524 3300030732 Bacteria 32090
122 Ga0316183_1001554 3300030742 Bacteria 44874
123 Ga0316181_1084577 3300030744 Bacteria 28644
124 Ga0316182_1033057 3300030745 Bacteria 1828
125 Ga0265327_10037822 3300031251 Bacteria 2638
126 Ga0307513_10041428 3300031456 Bacteria 5083
127 Ga0307408_100000080 3300031548 Bacteria 107681
128 Ga0307516_10001865 3300031730 Bacteria 28896
129 Ga0307413_10000062 3300031824 Bacteria 27702
130 Ga0307412_10000001 3300031911 Bacteria 822691
131 Ga0307412_10000222 3300031911 Bacteria 38184
132 Ga0307414_10003386 3300032004 Bacteria 8516
133 Ga0395900_0032127 3300037418 Bacteria 5396
134 Ga0395905_0006231 3300037471 Bacteria 12043
135 Ga0436365_0334589 3300039437 Bacteria 14458
136 Ga0439465_0000705 3300041413 Bacteria 10267
137 Ga0439445_0000023 3300042004 Bacteria 20324
138 Ga0451577_0000161 3300042876 Bacteria 146704
139 Ga0451577_0001096 3300042876 Bacteria 38706
140 Ga0451577_0038336 3300042876 Bacteria 4311
141 Ga0466965_0096939 3300044683 Bacteria 1505
142 Ga0453684_0000710 3300044712 Bacteria 117944
143 Ga0453684_0130709 3300044712 Bacteria 3013
144 Ga0453684_0313527 3300044712 Unclassified 1779
145 Ga0466957_0025652 3300044842 Bacteria 3494
146 Ga0451576_0039752 3300045051 Bacteria 4979
147 Ga0451576_0094073 3300045051 Bacteria 3116
148 Ga0466967_0109429 3300045976 Bacteria 2537
149 Ga0495596_0002423 3300046500 Bacteria 10062
150 Ga0495645_0272848 3300046543 Unclassified 1116
151 Ga0495634_0007516 3300046642 Bacteria 8169
152 Ga0496113_0151741 3300048916 Bacteria 1828
153 Ga0496116_0000006 3300048919 Bacteria 811937
154 Ga0496117_0000027 3300048920 Bacteria 412234
155 Ga0496118_0000620 3300048921 Bacteria 58296
156 Ga0496119_0000006 3300048922 Bacteria 505999
157 Ga0496121_0083057 3300048924 Bacteria 2530
158 Ga0496122_0000444 3300048925 Bacteria 86587
159 Ga0496122_0001430 3300048925 Bacteria 38686
160 Ga0496123_0000958 3300048926 Bacteria 44671
161 Ga0496123_0036727 3300048926 Bacteria 3468
162 Ga0496124_0000475 3300048927 Bacteria 69109
163 Ga0496125_0001099 3300048928 Bacteria 41620
164 Ga0496125_0022764 3300048928 Bacteria 5808
165 Ga0496125_0093798 3300048928 Bacteria 2239
166 Ga0496126_0000459 3300048929 Bacteria 81162
167 Ga0496126_0088857 3300048929 Bacteria 2721
168 Ga0501037_0111684 3300049573 Bacteria 1969
169 Ga0501047_0257768 3300049581 Bacteria 1592
170 Ga0501069_0061798 3300049585 Bacteria 2092
171 Ga0501070_0039420 3300049586 Unclassified 3941
172 Ga0501074_0124728 3300049590 Bacteria 1842
173 Ga0501223_000775 3300049663 Bacteria 7585
174 Ga0501083_0000212 3300049744 Bacteria 37667
175 Ga0501241_000018 3300049758 Bacteria 95195
176 Ga0501269_000035 3300049766 Bacteria 41924
177 Ga0501035_0172294 3300049822 Bacteria 1869
178 Ga0501044_0003509 3300049823 Bacteria 17650
179 Ga0501044_0151263 3300049823 Bacteria 2303
180 Ga0500559_0055274 3300053136 Bacteria 1760
181 Ga0500573_0069120 3300053140 Bacteria 2016
182 Ga0500590_100659 3300053148 Bacteria 1388
183 Ga0500639_027968 3300053163 Bacteria 2980
184 Ga0500636_0076845 3300053177 Bacteria 1930
185 Ga0500637_0048013 3300053178 Bacteria 2427
186 Ga0501084_0244238 3300054114 Bacteria 1515

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026121 Ga0207683_10441490 Ga0207683_104414902 304
2 3300013307 Ga0157372_10098423 Ga0157372_100984231 315
3 3300013308 Ga0157375_10099830 Ga0157375_100998303 316
4 3300030521 Ga0307511_10001417 Ga0307511_1000141718 316
5 3300053177 Ga0500636_0076845 Ga0500636_0076845_938_1900 316
6 3300044683 Ga0466965_0096939 Ga0466965_0096939_519_1484 319
7 3300010375 Ga0105239_10000026 Ga0105239_1000002638 325
8 3300013307 Ga0157372_10126967 Ga0157372_101269672 325
9 3300003771 Ga0055526_1000270 Ga0055526_10002706 326
10 3300003790 Ga0055528_1000108 Ga0055528_100010843 326
11 3300003791 Ga0055530_10000279 Ga0055530_1000027936 326
12 3300025273 Ga0209673_1000183 Ga0209673_100018365 326
13 3300025295 Ga0209564_1000561 Ga0209564_100056134 326
14 3300025298 Ga0209050_1001554 Ga0209050_10015546 326
15 3300025302 Ga0207426_1001332 Ga0207426_10013326 326
16 3300005616 Ga0068852_100138307 Ga0068852_1001383072 331
17 3300026142 Ga0207698_10019635 Ga0207698_100196352 331
18 3300042876 Ga0451577_0001096 Ga0451577_0001096_10246_11265 332
19 3300044712 Ga0453684_0000710 Ga0453684_0000710_38765_39784 332
20 3300044712 Ga0453684_0130709 Ga0453684_0130709_972_2003 332
21 iso_pu_bacteria 2582581278 2585142893 332
22 iso_pu_bacteria 2585428060 2587746078 332
23 iso_pu_bacteria 2585428182 2588210240 332
24 iso_pu_bacteria 2585428183 2588214533 332
25 iso_pu_bacteria 2585428184 2588217764 332
26 iso_pu_bacteria 2585428185 2588223022 332
27 iso_pu_bacteria 2588253712 2588444161 332
28 iso_pu_bacteria 2588254257 2590613926 332
29 iso_pu_bacteria 2728369107 2729199983 332
30 iso_pu_bacteria 2765235839 2765574144 332
31 iso_pu_bacteria 2775506739 2775671995 332
32 iso_pu_bacteria 2816332188 2816874361 332
33 iso_pu_bacteria 2871720351 2871724040 332
34 iso_pu_bacteria 2889290771 2889295335 332
35 iso_pu_bacteria 2919097161 2919098567 332
36 iso_pu_bacteria 2993372514 2993374604 332
37 3300021384 Ga0213876_10205359 Ga0213876_102053591 333
38 3300031251 Ga0265327_10037822 Ga0265327_100378222 333
39 3300039437 Ga0436365_0334589 Ga0436365_0334589_4525_5526 333
40 iso_pu_bacteria 2738541283 2738758253 334
41 3300025960 Ga0207651_10095259 Ga0207651_100952593 335
42 3300030732 Ga0316176_1040524 Ga0316176_10405249 335
43 iso_pu_bacteria 2902048731 2902049544 335
44 3300003203 JGI25406J46586_10001952 JGI25406J46586_1000195210 336
45 3300003320 rootH2_10062717 rootH2_100627171 336
46 3300003322 rootL2_10072994 rootL2_100729941 336
47 3300003578 Ga0006562J51391_1065498 Ga0006562J51391_10654984 336
48 3300005327 Ga0070658_10374925 Ga0070658_103749252 336
49 3300005329 Ga0070683_100000849 Ga0070683_10000084916 336
50 3300005329 Ga0070683_100027057 Ga0070683_1000270575 336
51 3300005337 Ga0070682_100000111 Ga0070682_1000001118 336
52 3300005337 Ga0070682_100007134 Ga0070682_1000071344 336
53 3300005344 Ga0070661_100160116 Ga0070661_1001601162 336
54 3300005354 Ga0070675_100069821 Ga0070675_1000698213 336
55 3300005366 Ga0070659_100004177 Ga0070659_1000041778 336
56 3300005366 Ga0070659_100020715 Ga0070659_1000207156 336
57 3300005367 Ga0070667_100001259 Ga0070667_1000012592 336
58 3300005456 Ga0070678_100064872 Ga0070678_1000648722 336
59 3300005535 Ga0070684_100253692 Ga0070684_1002536921 336
60 3300005539 Ga0068853_100044836 Ga0068853_1000448363 336
61 3300005616 Ga0068852_100226155 Ga0068852_1002261552 336
62 3300005617 Ga0068859_100033264 Ga0068859_1000332646 336
63 3300005618 Ga0068864_100248889 Ga0068864_1002488892 336
64 3300005843 Ga0068860_100072051 Ga0068860_1000720513 336
65 3300005985 Ga0081539_10001653 Ga0081539_1000165318 336
66 3300006931 Ga0097620_100033264 Ga0097620_1000332646 336
67 3300009148 Ga0105243_10041844 Ga0105243_100418443 336
68 3300013100 Ga0157373_10011658 Ga0157373_100116585 336
69 3300013104 Ga0157370_10046246 Ga0157370_100462464 336
70 3300013105 Ga0157369_10081939 Ga0157369_100819394 336
71 3300013297 Ga0157378_10016410 Ga0157378_100164105 336
72 3300013297 Ga0157378_10066898 Ga0157378_100668982 336
73 3300013306 Ga0163162_10367477 Ga0163162_103674772 336
74 3300013308 Ga0157375_10000220 Ga0157375_1000022023 336
75 3300014969 Ga0157376_10230144 Ga0157376_102301442 336
76 3300015261 Ga0182006_1000003 Ga0182006_1000003252 336
77 3300025291 Ga0209675_1000053 Ga0209675_1000053106 336
78 3300025295 Ga0209564_1034617 Ga0209564_10346172 336
79 3300025728 Ga0207655_1000013 Ga0207655_1000013455 336
80 3300025919 Ga0207657_10071843 Ga0207657_100718433 336
81 3300025920 Ga0207649_10009885 Ga0207649_100098855 336
82 3300025921 Ga0207652_10063093 Ga0207652_100630931 336
83 3300025932 Ga0207690_10017224 Ga0207690_100172246 336
84 3300025932 Ga0207690_10117503 Ga0207690_101175032 336
85 3300025933 Ga0207706_10000817 Ga0207706_100008175 336
86 3300025944 Ga0207661_10002359 Ga0207661_1000235910 336
87 3300025949 Ga0207667_10047038 Ga0207667_100470382 336
88 3300025986 Ga0207658_10030417 Ga0207658_100304173 336
89 3300026078 Ga0207702_10045901 Ga0207702_100459013 336
90 3300028381 Ga0268264_10098520 Ga0268264_100985203 336
91 3300031824 Ga0307413_10000062 Ga0307413_100000627 336
92 3300031911 Ga0307412_10000222 Ga0307412_1000022216 336
93 3300042004 Ga0439445_0000023 Ga0439445_0000023_3688_4698 336
94 3300045976 Ga0466967_0109429 Ga0466967_0109429_146_1156 336
95 3300046500 Ga0495596_0002423 Ga0495596_0002423_4523_5536 336
96 3300046543 Ga0495645_0272848 Ga0495645_0272848_56_1072 336
97 3300048924 Ga0496121_0083057 Ga0496121_0083057_1438_2451 336
98 3300048928 Ga0496125_0093798 Ga0496125_0093798_609_1634 336
99 3300048929 Ga0496126_0000459 Ga0496126_0000459_44823_45833 336
100 3300049573 Ga0501037_0111684 Ga0501037_0111684_905_1915 336
101 3300049758 Ga0501241_000018 Ga0501241_000018_15663_16679 336
102 3300049766 Ga0501269_000035 Ga0501269_000035_27085_28101 336
103 iso_pu_bacteria 2818991460 2819676543 336
104 3300003794 Ga0055531_10000003 Ga0055531_10000003151 337
105 3300005288 Ga0065714_10076565 Ga0065714_100765653 337
106 3300005367 Ga0070667_100065126 Ga0070667_1000651262 337
107 3300006237 Ga0097621_100000503 Ga0097621_1000005033 337
108 3300006358 Ga0068871_100009454 Ga0068871_1000094545 337
109 3300009545 Ga0105237_10001614 Ga0105237_1000161415 337
110 3300010375 Ga0105239_10000255 Ga0105239_1000025517 337
111 3300013297 Ga0157378_10068022 Ga0157378_100680223 337
112 3300013306 Ga0163162_10000834 Ga0163162_100008342 337
113 3300013306 Ga0163162_10003569 Ga0163162_1000356911 337
114 3300013308 Ga0157375_10005044 Ga0157375_100050443 337
115 3300013308 Ga0157375_10038230 Ga0157375_100382302 337
116 3300014325 Ga0163163_10000215 Ga0163163_1000021545 337
117 3300014968 Ga0157379_10094971 Ga0157379_100949712 337
118 3300014969 Ga0157376_10000216 Ga0157376_1000021632 337
119 3300017792 Ga0163161_10017377 Ga0163161_100173774 337
120 3300017792 Ga0163161_10052311 Ga0163161_100523113 337
121 3300025304 Ga0209257_1000008 Ga0209257_1000008362 337
122 3300025914 Ga0207671_10006642 Ga0207671_100066427 337
123 3300025961 Ga0207712_10025074 Ga0207712_100250743 337
124 3300025986 Ga0207658_10032346 Ga0207658_100323462 337
125 3300026088 Ga0207641_10162235 Ga0207641_101622352 337
126 3300032004 Ga0307414_10003386 Ga0307414_100033867 337
127 3300049581 Ga0501047_0257768 Ga0501047_0257768_487_1500 337
128 3300053140 Ga0500573_0069120 Ga0500573_0069120_206_1222 337
129 3300053163 Ga0500639_027968 Ga0500639_027968_182_1198 337
130 3300053178 Ga0500637_0048013 Ga0500637_0048013_458_1474 337
131 3300003784 Ga0055534_1006854 Ga0055534_10068543 338
132 3300005327 Ga0070658_10119831 Ga0070658_101198312 338
133 3300005347 Ga0070668_100083783 Ga0070668_1000837833 338
134 3300009036 Ga0105244_10000001 Ga0105244_10000001329 338
135 3300009093 Ga0105240_10094131 Ga0105240_100941314 338
136 3300013102 Ga0157371_10001072 Ga0157371_100010729 338
137 3300013104 Ga0157370_10000552 Ga0157370_1000055227 338
138 3300013104 Ga0157370_10004710 Ga0157370_100047101 338
139 3300025913 Ga0207695_10148571 Ga0207695_101485713 338
140 3300031911 Ga0307412_10000001 Ga0307412_10000001149 338
141 3300048916 Ga0496113_0151741 Ga0496113_0151741_509_1525 338
142 3300048919 Ga0496116_0000006 Ga0496116_0000006_135326_136342 338
143 3300048920 Ga0496117_0000027 Ga0496117_0000027_218844_219860 338
144 3300048921 Ga0496118_0000620 Ga0496118_0000620_17972_18988 338
145 3300048922 Ga0496119_0000006 Ga0496119_0000006_370234_371250 338
146 3300048925 Ga0496122_0000444 Ga0496122_0000444_43932_44948 338
147 3300048925 Ga0496122_0001430 Ga0496122_0001430_32677_33696 338
148 3300048926 Ga0496123_0000958 Ga0496123_0000958_41640_42656 338
149 3300048926 Ga0496123_0036727 Ga0496123_0036727_835_1854 338
150 3300048927 Ga0496124_0000475 Ga0496124_0000475_36580_37596 338
151 3300048928 Ga0496125_0001099 Ga0496125_0001099_32672_33691 338
152 3300048928 Ga0496125_0022764 Ga0496125_0022764_3558_4574 338
153 3300048929 Ga0496126_0088857 Ga0496126_0088857_1435_2451 338
154 3300003322 rootL2_10014286 rootL2_100142862 339
155 3300005288 Ga0065714_10071670 Ga0065714_100716703 339
156 3300006175 Ga0070712_100032904 Ga0070712_1000329042 339
157 3300013102 Ga0157371_10037106 Ga0157371_100371062 339
158 3300025912 Ga0207707_10125365 Ga0207707_101253652 339
159 3300030742 Ga0316183_1001554 Ga0316183_100155413 339
160 3300030744 Ga0316181_1084577 Ga0316181_10845778 339
161 3300030745 Ga0316182_1033057 Ga0316182_10330572 339
162 3300031456 Ga0307513_10041428 Ga0307513_100414285 339
163 3300031730 Ga0307516_10001865 Ga0307516_1000186517 339
164 3300041413 Ga0439465_0000705 Ga0439465_0000705_8097_9206 339
165 3300044842 Ga0466957_0025652 Ga0466957_0025652_831_1856 339
166 3300049822 Ga0501035_0172294 Ga0501035_0172294_586_1620 339
167 3300049823 Ga0501044_0003509 Ga0501044_0003509_14218_15252 339
168 3300003320 rootH2_10057841 rootH2_100578412 340
169 3300003322 rootL2_10193512 rootL2_101935121 340
170 3300003323 rootH1_10193381 rootH1_101933815 340
171 3300005331 Ga0070670_100064641 Ga0070670_1000646413 340
172 3300009545 Ga0105237_10036222 Ga0105237_100362222 340
173 3300013102 Ga0157371_10016889 Ga0157371_100168892 340
174 3300013306 Ga0163162_10144612 Ga0163162_101446122 340
175 3300014968 Ga0157379_10038569 Ga0157379_100385694 340
176 3300025208 Ga0209436_100762 Ga0209436_1007623 340
177 3300025302 Ga0207426_1005428 Ga0207426_10054284 340
178 3300025914 Ga0207671_10166020 Ga0207671_101660202 340
179 3300025925 Ga0207650_10046455 Ga0207650_100464552 340
180 3300031548 Ga0307408_100000080 Ga0307408_100000080103 340
181 3300037418 Ga0395900_0032127 Ga0395900_0032127_855_1892 340
182 3300037471 Ga0395905_0006231 Ga0395905_0006231_2057_3094 340
183 3300045051 Ga0451576_0094073 Ga0451576_0094073_1654_2679 340
184 3300049585 Ga0501069_0061798 Ga0501069_0061798_720_1745 340
185 3300049586 Ga0501070_0039420 Ga0501070_0039420_1259_2284 340
186 3300049590 Ga0501074_0124728 Ga0501074_0124728_233_1258 340
187 3300049663 Ga0501223_000775 Ga0501223_000775_4751_5791 340
188 3300049744 Ga0501083_0000212 Ga0501083_0000212_190_1215 340
189 3300049823 Ga0501044_0151263 Ga0501044_0151263_285_1310 340
190 3300053136 Ga0500559_0055274 Ga0500559_0055274_185_1246 340
191 3300053148 Ga0500590_100659 Ga0500590_100659_215_1249 340
192 3300054114 Ga0501084_0244238 Ga0501084_0244238_31_1056 340
193 3300013104 Ga0157370_10005493 Ga0157370_100054931 341
194 3300044712 Ga0453684_0313527 Ga0453684_0313527_356_1396 341
195 3300014325 Ga0163163_10585961 Ga0163163_105859611 342
196 3300042876 Ga0451577_0000161 Ga0451577_0000161_39365_40399 343
197 3300042876 Ga0451577_0038336 Ga0451577_0038336_2526_3569 343
198 3300045051 Ga0451576_0039752 Ga0451576_0039752_2848_3891 343
199 3300046642 Ga0495634_0007516 Ga0495634_0007516_1208_2260 343
200 3300002739 JGI25158J39367_1001079 JGI25158J39367_10010793 345
201 3300002987 JGI25159J45721_1006440 JGI25159J45721_10064404 345
202 3300003354 JGI25160J50197_1003075 JGI25160J50197_10030755 345
203 3300025208 Ga0209436_100146 Ga0209436_10014613 345
204 3300025284 Ga0209130_1000857 Ga0209130_100085712 345
205 3300025302 Ga0207426_1000033 Ga0207426_1000033327 345

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

160

285

0.97

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

33

151

0.93

PF01113

DapB_N

Dihydrodipicolinate reductase, N-terminus

33

147

0.87

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

39

150

0.82

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

163

368

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q2k-assembly1.cif.gz_E crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9578 6 338
3q2k-assembly2.cif.gz_P crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9552 6 338
3q2k-assembly2.cif.gz_L crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9548 6 338
3q2k-assembly1.cif.gz_F crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9286 6 338
3q2k-assembly2.cif.gz_O crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9212 1 338
ID Description Score Start End Superfamily
3q2kD02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9477 135 267 3.30.360.10
3q2kH01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9385 6 129 3.40.50.720
af_P39353_1_125_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9329 8 124 3.40.50.720
3moiA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9272 6 124 3.40.50.720
af_P77503_10_129_3.30.360.10 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9232 8 125 3.30.360.10
ID Description Score Start End GO Terms
AF-A0A0A2F273-F1-model_v4 Oxidoreductase 0.9672 1 338 GO:0000166
GO:0016491
AF-A0A0A2F273-F1-model_v4 Oxidoreductase 0.9561 1 338 GO:0000166
GO:0016491
AF-A0A2N1WB29-F1-model_v4 Oxidoreductase 0.9363 6 142 GO:0000166
AF-A0A3C0VKN9-F1-model_v4 Oxidoreductase 0.9277 5 125 GO:0000166
AF-A0A2V9ZKT5-F1-model_v4 Dehydrogenase 0.9251 6 338 GO:0000166
GO:0016491

Feature Viewer

pLDDT pTM Quality
91.66 0.9 High
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Predicted Structure (AlphaFold2)

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