F313830

General Info

Members Datasets Scaffolds Average Seq Length
205 105 410 544

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10059914|Ga0157374_100599143
Length 611
Sequence MAAVTTPHTGHHEPDPTESYLGGETGLKSWLFTLDHKRIGVMYLISVTIAFLLGGVFALLVRTEHLSHGRTIMDADTYNRMFSLHGVVMVFLFIIPSIPAAMGNIILPIQLGTKDVAFPRLNLLSFYIYVFGACFGLYSMFHGGVDTGWTFYTPYSSSDPTHGGVGTPAAVLPMTLAAFIMGFSSILTGVNFIATVHKMRAPGLTWRRLPLFIWALYATSIIQVLATPVLAITLLLLTMERFLGLGVFDPHLGGDPVLYQHFFWFYSHPAVYIMIVPGMGVVSEIIATFARREVVGYMFVAMSSLGLALVGFLVWGHHLFVAGMSEYAAMVFSALTFLVAIPSGVKVFNWVATLYKGSISLESPMLWGLAFIFLFTIGGLTGLFLGMLAVDVHLHDTYFVVAHFHYVMVGGTVMGFVGGLHYWWPKFTGKMYDEKMARVGFGFVFVGFNVTFLTQFVIGSRGMPRRYYNYLPEYEMGHQISTIGSYMLGLGFFILLVMFIQSLRNGKPAPRNPWGSAALEWQTPSPPPLYNFVTDPVITRGPYDYHLATDAELDEGWGELESRLAAPKKAHVEHDKHHHKGGALSGDDETAKKLDADAEAGKDTTAXPKKD

Samples

Sample ID Description Type Environment
1 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
17 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
39 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
42 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
43 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
44 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
48 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
49 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
50 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
51 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
52 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
53 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
56 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
57 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
58 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
61 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
62 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
63 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
64 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
67 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
68 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
88 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
89 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
90 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
91 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
97 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
98 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
99 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
100 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
101 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
102 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
103 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
104 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
105 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.05
Metatranscriptomes 1.46
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.24
Nodule 0
Rhizoplane 0.49
Rhizosphere 86.34
Stem 0
Stem Tuber 0
Unclassified 1.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157374_10059914 3300013296 Bacteria 3561
2 Ga0065707_10111340 3300005295 Bacteria 2398
3 Ga0070690_100005020 3300005330 Bacteria 7412
4 Ga0070682_100001159 3300005337 Bacteria 15064
5 Ga0070682_100006498 3300005337 Bacteria 6567
6 Ga0070667_100055067 3300005367 Bacteria 3359
7 Ga0070694_100034219 3300005444 Bacteria 3349
8 Ga0070698_100000234 3300005471 Bacteria 55039
9 Ga0070698_100016436 3300005471 Bacteria 7808
10 Ga0070679_100016094 3300005530 Bacteria 7205
11 Ga0070695_100001962 3300005545 Bacteria 11686
12 Ga0070665_100007684 3300005548 Bacteria 10952
13 Ga0068855_100000016 3300005563 Bacteria 222591
14 Ga0068855_100006058 3300005563 Bacteria 14749
15 Ga0075365_10000507 3300006038 Bacteria 14826
16 Ga0075363_100000634 3300006048 Bacteria 11646
17 Ga0075364_10003780 3300006051 Bacteria 8657
18 Ga0075367_10090236 3300006178 Bacteria 1864
19 Ga0075369_10000120 3300006186 Bacteria 21738
20 Ga0075427_10002748 3300006194 Bacteria 2385
21 Ga0075366_10003529 3300006195 Bacteria 8264
22 Ga0075370_10000962 3300006353 Bacteria 11884
23 Ga0075430_100002042 3300006846 Bacteria 16636
24 Ga0075431_100000171 3300006847 Bacteria 45972
25 Ga0075433_10015849 3300006852 Bacteria 6196
26 Ga0075429_100002531 3300006880 Bacteria 15391
27 Ga0075429_100005264 3300006880 Bacteria 11132
28 Ga0111539_10000180 3300009094 Bacteria 73651
29 Ga0111539_10015521 3300009094 Bacteria 9470
30 Ga0114129_10000302 3300009147 Bacteria 57340
31 Ga0105243_10114689 3300009148 Bacteria 2261
32 Ga0105238_10002356 3300009551 Bacteria 19000
33 Ga0157374_10020599 3300013296 Bacteria 5855
34 Ga0157375_10193280 3300013308 Bacteria 2190
35 Ga0207705_10048588 3300025909 Bacteria 3052
36 Ga0207646_10108669 3300025922 Bacteria 2489
37 Ga0207694_10002509 3300025924 Bacteria 14912
38 Ga0207686_10008956 3300025934 Bacteria 5415
39 Ga0207711_10099427 3300025941 Bacteria 2572
40 Ga0207661_10005888 3300025944 Bacteria 8654
41 Ga0207661_10018585 3300025944 Bacteria 5166
42 Ga0207667_10000099 3300025949 Bacteria 139071
43 Ga0207667_10001917 3300025949 Bacteria 26122
44 Ga0207712_10077825 3300025961 Bacteria 2405
45 Ga0207641_10052417 3300026088 Bacteria 3455
46 Ga0207428_10024016 3300027907 Bacteria 5119
47 Ga0268266_10003569 3300028379 Bacteria 15418
48 Ga0268264_10055291 3300028381 Bacteria 3316
49 Ga0265337_1013908 3300028556 Bacteria 2682
50 Ga0265326_10014171 3300028558 Unclassified 2322
51 Ga0265323_10000972 3300028653 Bacteria 14973
52 Ga0265323_10021403 3300028653 Bacteria 2477
53 Ga0265322_10009150 3300028654 Bacteria 2878
54 Ga0307515_10008990 3300028794 Bacteria 19409
55 Ga0265338_10000735 3300028800 Bacteria 55965
56 Ga0265338_10076510 3300028800 Bacteria 2834
57 Ga0265324_10000019 3300029957 Bacteria 177592
58 Ga0265330_10000191 3300031235 Bacteria 47469
59 Ga0265330_10003579 3300031235 Bacteria 8094
60 Ga0265330_10015681 3300031235 Bacteria 3504
61 Ga0265330_10021623 3300031235 Bacteria 2933
62 Ga0265330_10042781 3300031235 Bacteria 2006
63 Ga0265320_10019321 3300031240 Bacteria 3728
64 Ga0265325_10004409 3300031241 Bacteria 8899
65 Ga0265329_10000003 3300031242 Bacteria 115616
66 Ga0265329_10002383 3300031242 Bacteria 8532
67 Ga0265339_10000019 3300031249 Bacteria 177620
68 Ga0265339_10000416 3300031249 Bacteria 33650
69 Ga0265339_10001031 3300031249 Bacteria 21244
70 Ga0265331_10002565 3300031250 Bacteria 12213
71 Ga0265316_10000153 3300031344 Bacteria 76128
72 Ga0265316_10000191 3300031344 Bacteria 71027
73 Ga0265316_10000249 3300031344 Bacteria 62141
74 Ga0265316_10001437 3300031344 Bacteria 25625
75 Ga0265316_10004806 3300031344 Bacteria 13324
76 Ga0265316_10006403 3300031344 Bacteria 11247
77 Ga0265316_10007796 3300031344 Bacteria 10023
78 Ga0265316_10009780 3300031344 Bacteria 8806
79 Ga0307513_10014503 3300031456 Bacteria 9609
80 Ga0307509_10000035 3300031507 Bacteria 192339
81 Ga0307509_10003373 3300031507 Bacteria 24337
82 Ga0316579_10010770 3300031691 Bacteria 3873
83 Ga0316579_10043838 3300031691 Bacteria 2082
84 Ga0265314_10000001 3300031711 Bacteria 3792860
85 Ga0265314_10000008 3300031711 Bacteria 485166
86 Ga0265314_10000316 3300031711 Bacteria 67925
87 Ga0265314_10008482 3300031711 Bacteria 8794
88 Ga0265314_10065092 3300031711 Bacteria 2464
89 Ga0265342_10000160 3300031712 Bacteria 76128
90 Ga0265342_10000212 3300031712 Bacteria 65359
91 Ga0265342_10001810 3300031712 Bacteria 19446
92 Ga0265342_10003144 3300031712 Bacteria 13800
93 Ga0265342_10017359 3300031712 Bacteria 4684
94 Ga0265342_10028621 3300031712 Bacteria 3468
95 Ga0316576_10000109 3300031727 Bacteria 30537
96 Ga0307516_10008408 3300031730 Bacteria 11697
97 Ga0307406_10008689 3300031901 Bacteria 5676
98 Ga0307415_100124023 3300032126 Bacteria 1943
99 Ga0316593_10000384 3300032168 Bacteria 7886
100 Ga0316593_10001551 3300032168 Bacteria 5112
101 Ga0316588_1010876 3300033528 Bacteria 1928
102 Ga0373949_0000015 3300035090 Bacteria 61655
103 Ga0373936_0000020 3300035113 Bacteria 142589
104 Ga0373961_0000024 3300035241 Bacteria 97889
105 Ga0395900_0026271 3300037418 Bacteria 5963
106 Ga0395905_0000013 3300037471 Bacteria 400797
107 Ga0395905_0037741 3300037471 Bacteria 4534
108 Ga0395901_0029958 3300038443 Bacteria 5605
109 Ga0395901_0353971 3300038443 Bacteria 1515
110 Ga0451807_0621361 3300041486 Bacteria 5847
111 Ga0451577_0000098 3300042876 Bacteria 192790
112 Ga0451577_0000221 3300042876 Bacteria 117688
113 Ga0451577_0000263 3300042876 Bacteria 103774
114 Ga0451577_0000391 3300042876 Bacteria 81079
115 Ga0451577_0000955 3300042876 Bacteria 42306
116 Ga0451577_0002009 3300042876 Bacteria 25287
117 Ga0451577_0006023 3300042876 Bacteria 12210
118 Ga0451577_0016327 3300042876 Archaea 6879
119 Ga0451577_0018033 3300042876 Bacteria 6509
120 Ga0451577_0043633 3300042876 Bacteria 4017
121 Ga0451577_0058295 3300042876 Bacteria 3442
122 Ga0451577_0090574 3300042876 Bacteria 2730
123 Ga0451577_0157618 3300042876 Bacteria 2043
124 Ga0453683_0000028 3300044673 Bacteria 247877
125 Ga0453683_0001874 3300044673 Bacteria 17235
126 Ga0453683_0002543 3300044673 Bacteria 14062
127 Ga0453683_0005051 3300044673 Archaea 9263
128 Ga0453683_0013075 3300044673 Bacteria 5428
129 Ga0453683_0017726 3300044673 Bacteria 4580
130 Ga0453683_0026096 3300044673 Bacteria 3710
131 Ga0453683_0035250 3300044673 Bacteria 3153
132 Ga0453683_0035821 3300044673 Bacteria 3126
133 Ga0453683_0129137 3300044673 Bacteria 1592
134 Ga0453684_0000347 3300044712 Bacteria 192636
135 Ga0453684_0000367 3300044712 Bacteria 185852
136 Ga0453684_0000563 3300044712 Bacteria 139887
137 Ga0453684_0002302 3300044712 Bacteria 46928
138 Ga0453684_0002600 3300044712 Bacteria 43152
139 Ga0453684_0003106 3300044712 Bacteria 38236
140 Ga0453684_0003372 3300044712 Bacteria 36146
141 Ga0453684_0005410 3300044712 Bacteria 25318
142 Ga0453684_0005506 3300044712 Bacteria 25011
143 Ga0453684_0005636 3300044712 Bacteria 24617
144 Ga0453684_0007003 3300044712 Bacteria 21073
145 Ga0453684_0008553 3300044712 Bacteria 18263
146 Ga0453684_0012193 3300044712 Bacteria 14248
147 Ga0453684_0016119 3300044712 Bacteria 11723
148 Ga0453684_0020857 3300044712 Bacteria 9839
149 Ga0453684_0027793 3300044712 Bacteria 8096
150 Ga0453684_0036751 3300044712 Bacteria 6741
151 Ga0453684_0042985 3300044712 Bacteria 6081
152 Ga0453684_0055734 3300044712 Bacteria 5137
153 Ga0453684_0063808 3300044712 Bacteria 4709
154 Ga0453684_0069745 3300044712 Bacteria 4456
155 Ga0453684_0072878 3300044712 Bacteria 4333
156 Ga0453684_0078432 3300044712 Bacteria 4133
157 Ga0453684_0087065 3300044712 Bacteria 3873
158 Ga0453684_0089288 3300044712 Bacteria 3812
159 Ga0453684_0157469 3300044712 Bacteria 2691
160 Ga0451576_0000342 3300045051 Bacteria 112294
161 Ga0451576_0000350 3300045051 Bacteria 110906
162 Ga0451576_0000604 3300045051 Bacteria 75646
163 Ga0451576_0001015 3300045051 Bacteria 51898
164 Ga0451576_0001238 3300045051 Bacteria 45003
165 Ga0451576_0002443 3300045051 Bacteria 27748
166 Ga0451576_0016345 3300045051 Bacteria 8194
167 Ga0451576_0033603 3300045051 Bacteria 5452
168 Ga0451576_0053510 3300045051 Unclassified 4229
169 Ga0451576_0121307 3300045051 Unclassified 2722
170 Ga0495639_0009793 3300046475 Bacteria 4113
171 Ga0495686_0010296 3300047472 Bacteria 6661
172 Ga0501032_0001433 3300049569 Bacteria 18949
173 Ga0501037_0028165 3300049573 Bacteria 4150
174 Ga0501038_0081439 3300049574 Bacteria 2727
175 Ga0501038_0086433 3300049574 Bacteria 2634
176 Ga0501043_0003582 3300049579 Bacteria 12750
177 Ga0501047_0033652 3300049581 Bacteria 4946
178 Ga0501047_0079203 3300049581 Bacteria 3159
179 Ga0501068_0042120 3300049584 Bacteria 2746
180 Ga0501070_0029678 3300049586 Bacteria 4583
181 Ga0501083_0007205 3300049744 Bacteria 7898
182 nmdc:mga03n38_154_c1 3300050490 Bacteria 15091
183 nmdc:mga03n38_38668_c1 3300050490 Bacteria 2065
184 nmdc:mga00v17_2376_c1 3300050491 Bacteria 7012
185 nmdc:mga00v17_9750_c1 3300050491 Bacteria 5214
186 nmdc:mga0yw44_205_c1 3300050492 Bacteria 20984
187 nmdc:mga06z11_587_c1 3300050494 Bacteria 13304
188 nmdc:mga07m45_1329_c1 3300050496 Bacteria 11265
189 nmdc:mga05p37_220_c1 3300050507 Bacteria 57569
190 nmdc:mga09592_24019_c1 3300050508 Bacteria 5038
191 nmdc:mga09592_4736_c1 3300050508 Bacteria 11019
192 nmdc:mga09592_834_c1 3300050508 Bacteria 23928
193 nmdc:mga0qj67_3766_c1 3300050509 Bacteria 10946
194 nmdc:mga06r32_351_c1 3300050510 Bacteria 38412
195 nmdc:mga08y16_197_c1 3300050511 Bacteria 54492
196 nmdc:mga08y16_8673_c1 3300050511 Bacteria 10662
197 nmdc:mga0a205_59741_c1 3300050515 Bacteria 3682
198 nmdc:mga0sz30_83_c1 3300050516 Bacteria 36310
199 Ga0500578_0030051 3300053086 Bacteria 3490
200 Ga0500643_001945 3300053087 Bacteria 11194
201 Ga0500640_002952 3300053095 Bacteria 5787
202 Ga0500595_000048 3300053119 Bacteria 88786
203 Ga0500614_000160 3300053123 Bacteria 17038
204 Ga0500630_064911 3300053159 Bacteria 1738
205 2687235261 2684623219 Bacteria 8442773
206 Ga0157374_10059914
207 Ga0065707_10111340
208 Ga0070690_100005020
209 Ga0070682_100001159
210 Ga0070682_100006498
211 Ga0070667_100055067
212 Ga0070694_100034219
213 Ga0070698_100000234
214 Ga0070698_100016436
215 Ga0070679_100016094
216 Ga0070695_100001962
217 Ga0070665_100007684
218 Ga0068855_100000016
219 Ga0068855_100006058
220 Ga0075365_10000507
221 Ga0075363_100000634
222 Ga0075364_10003780
223 Ga0075367_10090236
224 Ga0075369_10000120
225 Ga0075427_10002748
226 Ga0075366_10003529
227 Ga0075370_10000962
228 Ga0075430_100002042
229 Ga0075431_100000171
230 Ga0075433_10015849
231 Ga0075429_100002531
232 Ga0075429_100005264
233 Ga0111539_10000180
234 Ga0111539_10015521
235 Ga0114129_10000302
236 Ga0105243_10114689
237 Ga0105238_10002356
238 Ga0157374_10020599
239 Ga0157375_10193280
240 Ga0207705_10048588
241 Ga0207646_10108669
242 Ga0207694_10002509
243 Ga0207686_10008956
244 Ga0207711_10099427
245 Ga0207661_10005888
246 Ga0207661_10018585
247 Ga0207667_10000099
248 Ga0207667_10001917
249 Ga0207712_10077825
250 Ga0207641_10052417
251 Ga0207428_10024016
252 Ga0268266_10003569
253 Ga0268264_10055291
254 Ga0265337_1013908
255 Ga0265326_10014171
256 Ga0265323_10000972
257 Ga0265323_10021403
258 Ga0265322_10009150
259 Ga0307515_10008990
260 Ga0265338_10000735
261 Ga0265338_10076510
262 Ga0265324_10000019
263 Ga0265330_10000191
264 Ga0265330_10003579
265 Ga0265330_10015681
266 Ga0265330_10021623
267 Ga0265330_10042781
268 Ga0265320_10019321
269 Ga0265325_10004409
270 Ga0265329_10000003
271 Ga0265329_10002383
272 Ga0265339_10000019
273 Ga0265339_10000416
274 Ga0265339_10001031
275 Ga0265331_10002565
276 Ga0265316_10000153
277 Ga0265316_10000191
278 Ga0265316_10000249
279 Ga0265316_10001437
280 Ga0265316_10004806
281 Ga0265316_10006403
282 Ga0265316_10007796
283 Ga0265316_10009780
284 Ga0307513_10014503
285 Ga0307509_10000035
286 Ga0307509_10003373
287 Ga0316579_10010770
288 Ga0316579_10043838
289 Ga0265314_10000001
290 Ga0265314_10000008
291 Ga0265314_10000316
292 Ga0265314_10008482
293 Ga0265314_10065092
294 Ga0265342_10000160
295 Ga0265342_10000212
296 Ga0265342_10001810
297 Ga0265342_10003144
298 Ga0265342_10017359
299 Ga0265342_10028621
300 Ga0316576_10000109
301 Ga0307516_10008408
302 Ga0307406_10008689
303 Ga0307415_100124023
304 Ga0316593_10000384
305 Ga0316593_10001551
306 Ga0316588_1010876
307 Ga0373949_0000015
308 Ga0373936_0000020
309 Ga0373961_0000024
310 Ga0395900_0026271
311 Ga0395905_0000013
312 Ga0395905_0037741
313 Ga0395901_0029958
314 Ga0395901_0353971
315 Ga0451807_0621361
316 Ga0451577_0000098
317 Ga0451577_0000221
318 Ga0451577_0000263
319 Ga0451577_0000391
320 Ga0451577_0000955
321 Ga0451577_0002009
322 Ga0451577_0006023
323 Ga0451577_0016327
324 Ga0451577_0018033
325 Ga0451577_0043633
326 Ga0451577_0058295
327 Ga0451577_0090574
328 Ga0451577_0157618
329 Ga0453683_0000028
330 Ga0453683_0001874
331 Ga0453683_0002543
332 Ga0453683_0005051
333 Ga0453683_0013075
334 Ga0453683_0017726
335 Ga0453683_0026096
336 Ga0453683_0035250
337 Ga0453683_0035821
338 Ga0453683_0129137
339 Ga0453684_0000347
340 Ga0453684_0000367
341 Ga0453684_0000563
342 Ga0453684_0002302
343 Ga0453684_0002600
344 Ga0453684_0003106
345 Ga0453684_0003372
346 Ga0453684_0005410
347 Ga0453684_0005506
348 Ga0453684_0005636
349 Ga0453684_0007003
350 Ga0453684_0008553
351 Ga0453684_0012193
352 Ga0453684_0016119
353 Ga0453684_0020857
354 Ga0453684_0027793
355 Ga0453684_0036751
356 Ga0453684_0042985
357 Ga0453684_0055734
358 Ga0453684_0063808
359 Ga0453684_0069745
360 Ga0453684_0072878
361 Ga0453684_0078432
362 Ga0453684_0087065
363 Ga0453684_0089288
364 Ga0453684_0157469
365 Ga0451576_0000342
366 Ga0451576_0000350
367 Ga0451576_0000604
368 Ga0451576_0001015
369 Ga0451576_0001238
370 Ga0451576_0002443
371 Ga0451576_0016345
372 Ga0451576_0033603
373 Ga0451576_0053510
374 Ga0451576_0121307
375 Ga0495639_0009793
376 Ga0495686_0010296
377 Ga0501032_0001433
378 Ga0501037_0028165
379 Ga0501038_0081439
380 Ga0501038_0086433
381 Ga0501043_0003582
382 Ga0501047_0033652
383 Ga0501047_0079203
384 Ga0501068_0042120
385 Ga0501070_0029678
386 Ga0501083_0007205
387 nmdc:mga03n38_154_c1
388 nmdc:mga03n38_38668_c1
389 nmdc:mga00v17_2376_c1
390 nmdc:mga00v17_9750_c1
391 nmdc:mga0yw44_205_c1
392 nmdc:mga06z11_587_c1
393 nmdc:mga07m45_1329_c1
394 nmdc:mga05p37_220_c1
395 nmdc:mga09592_24019_c1
396 nmdc:mga09592_4736_c1
397 nmdc:mga09592_834_c1
398 nmdc:mga0qj67_3766_c1
399 nmdc:mga06r32_351_c1
400 nmdc:mga08y16_197_c1
401 nmdc:mga08y16_8673_c1
402 nmdc:mga0a205_59741_c1
403 nmdc:mga0sz30_83_c1
404 Ga0500578_0030051
405 Ga0500643_001945
406 Ga0500640_002952
407 Ga0500595_000048
408 Ga0500614_000160
409 Ga0500630_064911
410 2687235261

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00115

COX1

Cytochrome C and Quinol oxidase polypeptide I

38

487

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3oma-assembly2.cif.gz_C catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides with k362m mutation 0.9711 32 522
3omi-assembly2.cif.gz_C catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides with d132a mutation 0.9708 32 522
6pw1-assembly2.cif.gz_C cytochrome c oxidase delta 16 0.9687 31 522
1m57-assembly2.cif.gz_G structure of cytochrome c oxidase from rhodobacter sphaeroides (eq(i-286) mutant)) 0.9687 27 530
7jrp-assembly1.cif.gz_a plant mitochondrial complex sc iii2+iv from vigna radiata 0.9634 31 530
ID Description Score Start End Superfamily
af_Q7HP04_41_512_1.20.210.10 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9594 30 489 1.20.210.10
af_Q2FZK0_30_556_1.20.210.10 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9559 30 530 1.20.210.10
2yevD01 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9532 30 539 1.20.210.10
af_P9WP71_20_544_1.20.210.10 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9528 25 537 1.20.210.10
af_O21042_10_509_1.20.210.10 Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain 0.9499 31 504 1.20.210.10
ID Description Score Start End GO Terms
AF-A0A7V4EMR8-F1-model_v4 Cytochrome c oxidase subunit I 0.9854 392 552 GO:0004129
GO:0009060
GO:0015990
GO:0016020
GO:0020037
GO:0022904
AF-R9WNJ2-F1-model_v4 Cytochrome c oxidase subunit 1 (EC 7.1.1.9) 0.9828 353 496 GO:0004129
GO:0005743
GO:0006123
GO:0015990
GO:0020037
GO:0046872
AF-A0A5A7N9Q5-F1-model_v4 Cytochrome oxidase subunit I profile domain-containing protein 0.9822 388 532 GO:0004129
GO:0009060
GO:0015990
GO:0016020
GO:0020037
GO:0022904
AF-A0A068CQX3-F1-model_v4 Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I) 0.9804 395 503 GO:0004129
GO:0005743
GO:0006123
GO:0015990
GO:0020037
AF-A0A172UXP0-F1-model_v4 Cytochrome c oxidase subunit 1 (EC 7.1.1.9) 0.9799 356 497 GO:0004129
GO:0005743
GO:0006123
GO:0015990
GO:0020037
GO:0046872

Map