F305836

General Info

Members Datasets Scaffolds Average Seq Length
199 142 398 226

Family's Representative Sequence

Representative Sequence 3300021388|Ga0213875_10001241|Ga0213875_100012416
Length 252
Sequence MIRAVIFDIDGTLVDSVDLHAEAWQEAFAHFGHRFDFSAIRAQIGKGGDQLMPVFLSKDELEVRGEEIEQYRGELFKRRYFPQVVERVEANGQRIALASSAKKDELAAYKKIAGIEDLVEQESSSDDAEKSKPHPDIFAAALDRLGDIPAEEAVAIGDTPYDAEAAGKLKLRTIGVLCGGFPAEDLRRAGCIAIYRDLAEMLAGFDRSPLAREAPGRGSARKPSFPMMLACGAVAAAXXGLVAATLASRRGG

Samples

Sample ID Description Type Environment
1 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
6 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
51 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
76 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
84 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
88 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
92 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
93 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
94 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
95 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
96 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
97 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
98 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
99 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
100 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
101 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
102 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
103 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
106 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
107 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
108 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
109 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
110 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
113 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
114 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
115 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
121 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
122 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
123 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
124 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
136 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
137 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
138 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
139 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
140 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
141 2886627955 Nostoc sp. PA-18-2419 JC1668 Isolate Unclassified
142 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.97
Metatranscriptomes 2.01
Isolates 3.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.01
Nodule 0.5
Rhizoplane 7.54
Rhizosphere 74.37
Stem 0
Stem Tuber 0
Unclassified 19.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0213875_10001241 3300021388 Bacteria 17201
2 JGI25406J46586_10006360 3300003203 Bacteria 5448
3 JGI25406J46586_10019922 3300003203 Bacteria 2724
4 rootH2_10000704 3300003320 Bacteria 31849
5 rootL2_10122598 3300003322 Bacteria 4934
6 Ga0058859_11563420 3300004798 Unclassified 875
7 Ga0058863_11921880 3300004799 Unclassified 1220
8 Ga0065704_10190129 3300005289 Bacteria 1189
9 Ga0070670_100537937 3300005331 Unclassified 1041
10 Ga0068869_100743742 3300005334 Bacteria 839
11 Ga0070680_100033860 3300005336 Unclassified 4120
12 Ga0070661_100629043 3300005344 Unclassified 870
13 Ga0070668_100301468 3300005347 Bacteria 1344
14 Ga0070659_100585001 3300005366 Unclassified 958
15 Ga0070714_100274976 3300005435 Bacteria 1563
16 Ga0070701_10116254 3300005438 Bacteria 1501
17 Ga0070700_100000110 3300005441 Bacteria 52465
18 Ga0070708_100368467 3300005445 Bacteria 1354
19 Ga0070662_100338578 3300005457 Unclassified 1230
20 Ga0070681_10251071 3300005458 Unclassified 1682
21 Ga0070679_100142358 3300005530 Bacteria 2377
22 Ga0070665_100002193 3300005548 Bacteria 21782
23 Ga0070665_100006693 3300005548 Bacteria 11716
24 Ga0070704_100040811 3300005549 Unclassified 3198
25 Ga0068855_100284207 3300005563 Bacteria 1836
26 Ga0068855_100398857 3300005563 Bacteria 1508
27 Ga0068856_100018521 3300005614 Bacteria 6748
28 Ga0068856_100343260 3300005614 Bacteria 1511
29 Ga0068856_100674924 3300005614 Unclassified 1054
30 Ga0068852_101195497 3300005616 Bacteria 781
31 Ga0068859_100002578 3300005617 Bacteria 18429
32 Ga0068859_100124072 3300005617 Unclassified 2650
33 Ga0068859_100217392 3300005617 Bacteria 1998
34 Ga0068862_100129453 3300005844 Unclassified 2231
35 Ga0081539_10002490 3300005985 Bacteria 25888
36 Ga0081539_10002826 3300005985 Bacteria 23206
37 Ga0081539_10005026 3300005985 Bacteria 13921
38 Ga0075365_10020310 3300006038 Bacteria 4116
39 Ga0075428_100594012 3300006844 Bacteria 1182
40 Ga0075430_100516072 3300006846 Bacteria 986
41 Ga0075431_101153833 3300006847 Bacteria 738
42 Ga0075433_10006396 3300006852 Bacteria 9311
43 Ga0075434_100189141 3300006871 Bacteria 2079
44 Ga0075434_100414820 3300006871 Bacteria 1367
45 Ga0097620_100002578 3300006931 Bacteria 18429
46 Ga0097620_100124074 3300006931 Unclassified 2650
47 Ga0097620_100217403 3300006931 Bacteria 1998
48 Ga0105240_10264405 3300009093 Bacteria 1983
49 Ga0111539_10196924 3300009094 Bacteria 2350
50 Ga0114129_10035044 3300009147 Bacteria 7090
51 Ga0114129_10045044 3300009147 Bacteria 6203
52 Ga0114129_10077124 3300009147 Bacteria 4637
53 Ga0105248_10004215 3300009177 Bacteria 15906
54 Ga0105248_10496876 3300009177 Bacteria 1375
55 Ga0105237_10400810 3300009545 Unclassified 1377
56 Ga0105249_10247940 3300009553 Bacteria 1764
57 Ga0105246_10302720 3300011119 Unclassified 1291
58 Ga0105246_10343678 3300011119 Unclassified 1220
59 Ga0157370_10002972 3300013104 Bacteria 20158
60 Ga0157370_10551216 3300013104 Bacteria 1057
61 Ga0157369_10177252 3300013105 Bacteria 2244
62 Ga0157369_10749134 3300013105 Bacteria 1005
63 Ga0157369_11009745 3300013105 Unclassified 852
64 Ga0157372_10411436 3300013307 Bacteria 1576
65 Ga0157375_10227230 3300013308 Bacteria 2025
66 Ga0157375_10390116 3300013308 Unclassified 1559
67 Ga0163163_10473393 3300014325 Bacteria 1313
68 Ga0157380_10535714 3300014326 Bacteria 1145
69 Ga0213876_10000011 3300021384 Bacteria 414473
70 Ga0213876_10000112 3300021384 Bacteria 89665
71 Ga0213876_10003443 3300021384 Bacteria 9054
72 Ga0213876_10005602 3300021384 Bacteria 6895
73 Ga0213876_10034254 3300021384 Plasmid 2678
74 Ga0213875_10001010 3300021388 Bacteria 20005
75 Ga0213871_10002100 3300021441 Bacteria 3585
76 Ga0224712_10078008 3300022467 Unclassified 1361
77 Ga0224712_10299287 3300022467 Bacteria 752
78 Ga0207654_10035078 3300025911 Unclassified 2792
79 Ga0207652_10619656 3300025921 Unclassified 969
80 Ga0207690_10362942 3300025932 Unclassified 1148
81 Ga0207706_10105909 3300025933 Bacteria 2474
82 Ga0207670_10228120 3300025936 Unclassified 1429
83 Ga0207711_10014115 3300025941 Bacteria 6637
84 Ga0207661_10309498 3300025944 Unclassified 1418
85 Ga0207667_10198378 3300025949 Bacteria 2059
86 Ga0207678_10017475 3300026067 Bacteria 6297
87 Ga0207708_10000028 3300026075 Bacteria 164263
88 Ga0207708_10061643 3300026075 Bacteria 2864
89 Ga0207702_10005536 3300026078 Bacteria 11035
90 Ga0207702_10632081 3300026078 Unclassified 1052
91 Ga0207641_10700507 3300026088 Bacteria 997
92 Ga0207676_10410528 3300026095 Bacteria 1268
93 Ga0207674_10572487 3300026116 Bacteria 1091
94 Ga0207675_100137668 3300026118 Bacteria 2318
95 Ga0209983_1035420 3300027665 Unclassified 1070
96 Ga0209974_10060990 3300027876 Unclassified 1277
97 Ga0268266_10002018 3300028379 Bacteria 22633
98 Ga0268266_10052828 3300028379 Bacteria 3490
99 Ga0268266_10519221 3300028379 Unclassified 1139
100 Ga0268265_10096166 3300028380 Unclassified 2380
101 Ga0268264_10702640 3300028381 Bacteria 1004
102 Ga0316182_1231585 3300030745 Bacteria 1489
103 Ga0265327_10007284 3300031251 Bacteria 8581
104 Ga0307513_10199108 3300031456 Bacteria 1846
105 Ga0307408_100000007 3300031548 Bacteria 463086
106 Ga0307408_100028100 3300031548 Bacteria 3884
107 Ga0307410_10000116 3300031852 Bacteria 27908
108 Ga0307407_10296881 3300031903 Bacteria 1125
109 Ga0307409_100000131 3300031995 Bacteria 28085
110 Ga0307416_100000118 3300032002 Bacteria 47722
111 Ga0307416_100065619 3300032002 Bacteria 2984
112 Ga0307416_100898657 3300032002 Bacteria 986
113 Ga0307414_10053357 3300032004 Unclassified 2819
114 Ga0307411_10102777 3300032005 Bacteria 2026
115 Ga0373943_0076488 3300035170 Bacteria 1708
116 Ga0373943_0208301 3300035170 Bacteria 1085
117 Ga0373943_0214173 3300035170 Bacteria 1071
118 Ga0373946_0332118 3300035171 Unclassified 757
119 Ga0373935_0242113 3300035692 Bacteria 1260
120 Ga0373947_0302955 3300035725 Bacteria 1066
121 Ga0373925_0547040 3300037068 Unclassified 952
122 Ga0395905_0001105 3300037471 Bacteria 33894
123 Ga0436364_0259904 3300037853 Unclassified 4707
124 Ga0436364_0690035 3300037853 Bacteria 1728
125 Ga0436364_0755832 3300037853 Bacteria 50614
126 Ga0436364_0796453 3300037853 Bacteria 3429
127 Ga0436364_0842757 3300037853 Bacteria 1841
128 Ga0436364_1092790 3300037853 Bacteria 886
129 Ga0436364_1130057 3300037853 Bacteria 4600
130 Ga0436364_1206713 3300037853 Bacteria 32706
131 Ga0436364_1491594 3300037853 Bacteria 4689
132 Ga0395901_0192949 3300038443 Bacteria 2136
133 Ga0436365_0281288 3300039437 Bacteria 10265
134 Ga0436365_0478447 3300039437 Bacteria 15909
135 Ga0436365_0970387 3300039437 Bacteria 322356
136 Ga0436365_1218614 3300039437 Bacteria 23452
137 Ga0436365_1379130 3300039437 Bacteria 6380
138 Ga0436365_1425589 3300039437 Bacteria 204653
139 Ga0436360_0307050 3300039438 Bacteria 4235
140 Ga0436360_0941559 3300039438 Bacteria 877
141 Ga0436361_0664507 3300039447 Bacteria 1279
142 Ga0436363_1072328 3300039450 Bacteria 738
143 Ga0436363_1686500 3300039450 Bacteria 997
144 Ga0436362_0011394 3300039453 Bacteria 2021
145 Ga0436362_0456371 3300039453 Bacteria 1325
146 Ga0466957_0339088 3300044842 Bacteria 1018
147 Ga0495603_0123540 3300046455 Bacteria 1508
148 Ga0495629_0004673 3300046459 Bacteria 10257
149 Ga0495650_0004470 3300046471 Bacteria 9562
150 Ga0495580_0173475 3300046472 Bacteria 1490
151 Ga0495664_0021764 3300046477 Bacteria 3705
152 Ga0495583_0130778 3300046506 Bacteria 1050
153 Ga0495630_0455879 3300046517 Bacteria 980
154 Ga0495642_0004333 3300046528 Bacteria 5511
155 Ga0495654_0086016 3300046530 Bacteria 1466
156 Ga0495640_0231401 3300046533 Bacteria 1162
157 Ga0495586_0033302 3300046535 Bacteria 2765
158 Ga0495645_0012932 3300046543 Bacteria 5892
159 Ga0495669_0009563 3300046684 Bacteria 4091
160 Ga0495613_0076376 3300046689 Bacteria 2438
161 Ga0495649_0034642 3300046694 Bacteria 2778
162 Ga0495581_0015622 3300047315 Bacteria 4406
163 Ga0495683_0119959 3300047323 Bacteria 1249
164 Ga0495679_055507 3300047446 Bacteria 1176
165 Ga0495593_0270163 3300047673 Bacteria 851
166 Ga0495614_0128524 3300048089 Bacteria 1120
167 Ga0496100_0169445 3300048903 Bacteria 1571
168 Ga0496101_0221631 3300048904 Bacteria 1468
169 Ga0496101_0446872 3300048904 Bacteria 1020
170 Ga0496102_0586830 3300048905 Bacteria 1037
171 Ga0496102_0729457 3300048905 Unclassified 914
172 Ga0496104_0010718 3300048907 Bacteria 8197
173 Ga0496105_0082545 3300048908 Bacteria 2655
174 Ga0496108_0001794 3300048911 Bacteria 17102
175 Ga0496109_0016010 3300048912 Bacteria 6553
176 Ga0496110_0041376 3300048913 Bacteria 4020
177 Ga0496111_0063899 3300048914 Bacteria 2669
178 Ga0496112_0189729 3300048915 Bacteria 2017
179 Ga0496114_0062839 3300048917 Bacteria 3108
180 Ga0496115_0114170 3300048918 Unclassified 2220
181 Ga0496115_0150832 3300048918 Bacteria 1919
182 Ga0501038_0001059 3300049574 Bacteria 24818
183 Ga0501070_1086694 3300049586 Unclassified 617
184 Ga0501035_0077248 3300049822 Bacteria 2943
185 nmdc:mga05p37_158763_c1 3300050507 Bacteria 2762
186 nmdc:mga05p37_267788_c1 3300050507 Bacteria 2042
187 nmdc:mga05p37_44432_c1 3300050507 Bacteria 5466
188 nmdc:mga08y16_446969_c1 3300050511 Bacteria 1318
189 nmdc:mga0n895_45527_c1 3300050512 Bacteria 4281
190 nmdc:mga0a205_142941_c1 3300050515 Unclassified 2293
191 nmdc:mga0a205_3047_c1 3300050515 Bacteria 14858
192 Ga0495619_0320349 3300053085 Bacteria 1073
193 Ga0500644_0038413 3300053088 Unclassified 1571
194 2599101519 2597490356 Bacteria 7030811
195 2671694187 2671180139 Bacteria 4196045
196 2846953757 2846952575 Bacteria 6587527
197 2848860059 2848858292 Bacteria 7391279
198 2886631438 2886627955 Bacteria 7618130
199 2894236986 2894232714 Bacteria 8834183
200 Ga0213875_10001241
201 JGI25406J46586_10006360
202 JGI25406J46586_10019922
203 rootH2_10000704
204 rootL2_10122598
205 Ga0058859_11563420
206 Ga0058863_11921880
207 Ga0065704_10190129
208 Ga0070670_100537937
209 Ga0068869_100743742
210 Ga0070680_100033860
211 Ga0070661_100629043
212 Ga0070668_100301468
213 Ga0070659_100585001
214 Ga0070714_100274976
215 Ga0070701_10116254
216 Ga0070700_100000110
217 Ga0070708_100368467
218 Ga0070662_100338578
219 Ga0070681_10251071
220 Ga0070679_100142358
221 Ga0070665_100002193
222 Ga0070665_100006693
223 Ga0070704_100040811
224 Ga0068855_100284207
225 Ga0068855_100398857
226 Ga0068856_100018521
227 Ga0068856_100343260
228 Ga0068856_100674924
229 Ga0068852_101195497
230 Ga0068859_100002578
231 Ga0068859_100124072
232 Ga0068859_100217392
233 Ga0068862_100129453
234 Ga0081539_10002490
235 Ga0081539_10002826
236 Ga0081539_10005026
237 Ga0075365_10020310
238 Ga0075428_100594012
239 Ga0075430_100516072
240 Ga0075431_101153833
241 Ga0075433_10006396
242 Ga0075434_100189141
243 Ga0075434_100414820
244 Ga0097620_100002578
245 Ga0097620_100124074
246 Ga0097620_100217403
247 Ga0105240_10264405
248 Ga0111539_10196924
249 Ga0114129_10035044
250 Ga0114129_10045044
251 Ga0114129_10077124
252 Ga0105248_10004215
253 Ga0105248_10496876
254 Ga0105237_10400810
255 Ga0105249_10247940
256 Ga0105246_10302720
257 Ga0105246_10343678
258 Ga0157370_10002972
259 Ga0157370_10551216
260 Ga0157369_10177252
261 Ga0157369_10749134
262 Ga0157369_11009745
263 Ga0157372_10411436
264 Ga0157375_10227230
265 Ga0157375_10390116
266 Ga0163163_10473393
267 Ga0157380_10535714
268 Ga0213876_10000011
269 Ga0213876_10000112
270 Ga0213876_10003443
271 Ga0213876_10005602
272 Ga0213876_10034254
273 Ga0213875_10001010
274 Ga0213871_10002100
275 Ga0224712_10078008
276 Ga0224712_10299287
277 Ga0207654_10035078
278 Ga0207652_10619656
279 Ga0207690_10362942
280 Ga0207706_10105909
281 Ga0207670_10228120
282 Ga0207711_10014115
283 Ga0207661_10309498
284 Ga0207667_10198378
285 Ga0207678_10017475
286 Ga0207708_10000028
287 Ga0207708_10061643
288 Ga0207702_10005536
289 Ga0207702_10632081
290 Ga0207641_10700507
291 Ga0207676_10410528
292 Ga0207674_10572487
293 Ga0207675_100137668
294 Ga0209983_1035420
295 Ga0209974_10060990
296 Ga0268266_10002018
297 Ga0268266_10052828
298 Ga0268266_10519221
299 Ga0268265_10096166
300 Ga0268264_10702640
301 Ga0316182_1231585
302 Ga0265327_10007284
303 Ga0307513_10199108
304 Ga0307408_100000007
305 Ga0307408_100028100
306 Ga0307410_10000116
307 Ga0307407_10296881
308 Ga0307409_100000131
309 Ga0307416_100000118
310 Ga0307416_100065619
311 Ga0307416_100898657
312 Ga0307414_10053357
313 Ga0307411_10102777
314 Ga0373943_0076488
315 Ga0373943_0208301
316 Ga0373943_0214173
317 Ga0373946_0332118
318 Ga0373935_0242113
319 Ga0373947_0302955
320 Ga0373925_0547040
321 Ga0395905_0001105
322 Ga0436364_0259904
323 Ga0436364_0690035
324 Ga0436364_0755832
325 Ga0436364_0796453
326 Ga0436364_0842757
327 Ga0436364_1092790
328 Ga0436364_1130057
329 Ga0436364_1206713
330 Ga0436364_1491594
331 Ga0395901_0192949
332 Ga0436365_0281288
333 Ga0436365_0478447
334 Ga0436365_0970387
335 Ga0436365_1218614
336 Ga0436365_1379130
337 Ga0436365_1425589
338 Ga0436360_0307050
339 Ga0436360_0941559
340 Ga0436361_0664507
341 Ga0436363_1072328
342 Ga0436363_1686500
343 Ga0436362_0011394
344 Ga0436362_0456371
345 Ga0466957_0339088
346 Ga0495603_0123540
347 Ga0495629_0004673
348 Ga0495650_0004470
349 Ga0495580_0173475
350 Ga0495664_0021764
351 Ga0495583_0130778
352 Ga0495630_0455879
353 Ga0495642_0004333
354 Ga0495654_0086016
355 Ga0495640_0231401
356 Ga0495586_0033302
357 Ga0495645_0012932
358 Ga0495669_0009563
359 Ga0495613_0076376
360 Ga0495649_0034642
361 Ga0495581_0015622
362 Ga0495683_0119959
363 Ga0495679_055507
364 Ga0495593_0270163
365 Ga0495614_0128524
366 Ga0496100_0169445
367 Ga0496101_0221631
368 Ga0496101_0446872
369 Ga0496102_0586830
370 Ga0496102_0729457
371 Ga0496104_0010718
372 Ga0496105_0082545
373 Ga0496108_0001794
374 Ga0496109_0016010
375 Ga0496110_0041376
376 Ga0496111_0063899
377 Ga0496112_0189729
378 Ga0496114_0062839
379 Ga0496115_0114170
380 Ga0496115_0150832
381 Ga0501038_0001059
382 Ga0501070_1086694
383 Ga0501035_0077248
384 nmdc:mga05p37_158763_c1
385 nmdc:mga05p37_267788_c1
386 nmdc:mga05p37_44432_c1
387 nmdc:mga08y16_446969_c1
388 nmdc:mga0n895_45527_c1
389 nmdc:mga0a205_142941_c1
390 nmdc:mga0a205_3047_c1
391 Ga0495619_0320349
392 Ga0500644_0038413
393 2599101519
394 2671694187
395 2846953757
396 2848860059
397 2886631438
398 2894236986

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

2

169

0.94

PF13419

HAD_2

Haloacid dehalogenase-like hydrolase

5

176

0.93

PF13242

Hydrolase_like

HAD-hyrolase-like

130

201

0.91

PF12710

HAD

haloacid dehalogenase-like hydrolase

5

167

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
3s6j-assembly2.cif.gz_B the crystal structure of a hydrolase from pseudomonas syringae 0.9299 3 216
3s6j-assembly3.cif.gz_D the crystal structure of a hydrolase from pseudomonas syringae 0.9245 3 216
3s6j-assembly3.cif.gz_C the crystal structure of a hydrolase from pseudomonas syringae 0.9178 3 216
3s6j-assembly2.cif.gz_F the crystal structure of a hydrolase from pseudomonas syringae 0.9141 3 216
3s6j-assembly2.cif.gz_B the crystal structure of a hydrolase from pseudomonas syringae 0.9086 3 216
ID Description Score Start End Superfamily
af_Q652P6_229_339_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9437 98 206 3.40.50.1000
3d6jA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9238 1 206 3.40.50.1000
4eekA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative phosphatase; domain 2 0.9221 18 44 1.10.150.240
af_A0A0R0KYK9_29_156_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9158 94 209 3.40.50.1000
3s6jB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9145 3 216 3.40.50.1000
ID Description Score Start End GO Terms
AF-A0A321LYB3-F1-model_v4 HAD family hydrolase 0.9941 2 220 GO:0005829
GO:0006281
GO:0008967
AF-A0A059WTP7-F1-model_v4 Haloacid dehalogenase-like hydrolase 0.9912 1 192 GO:0005829
GO:0006281
GO:0008967
AF-A0A518HFH9-F1-model_v4 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.9885 1 191 GO:0005829
GO:0006281
GO:0008967
AF-A0A327L0C5-F1-model_v4 HAD family hydrolase 0.9884 1 219 GO:0005829
GO:0006281
GO:0008967
AF-A0A7W1W831-F1-model_v4 HAD family phosphatase 0.9861 1 152 GO:0003824

Map