|
Taxon Oid |
3300004798
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies |
| Genome Name Sample Name |
Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300004798 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Unclassified |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies |
| Img Submission Id |
61032 |
|
Gold Analysis Project Id
|
Ga0058859
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0102499
|
|
Gold Study Id
|
Gs0111424
|
| Add Date |
04/28/2015 00:00:00 |
| Assembly Method |
megahit v. 0.2.0 |
| Comments |
Released by Nikos bc they passed the 6 months embargo date |
| Funding Agency |
E; D; O |
| Has Coverage |
False |
| Public Release Date |
01/07/2016 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Neha Varghese |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected] |
| Alt2 Contact Names |
James Tiedje |
| Contact Email |
[email protected] |
| Contact Name |
James Tiedje |
| Award Doi |
10.46936/10.25585/60000623 |
| Funding Program |
BRC-GLBRC |
| Funding Year |
2014 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA365809 |
| Ncbi Biosample Accession |
SAMN06267557 |
| Sequencing Method |
Illumina HiSeq 2500 |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Unclassified |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Geographic Location |
Kellogg Biological Station, Michigan, USA |
| Habitat |
Switchgrass rhizosphere and bulk soil |
| Isolation |
Kellogg Biological Station, Michigan, USA |
| Isolation Country |
8855 |
| Latitude |
42.3912 |
| Longitude |
-85.3838 |
| Sample Collection Date |
2013/7/31 |
| Host Name |
Panicum virgatum |
| Genome Size Assembled |
593278329 |
| Gene Count Assembled |
1898302 |