F298320

General Info

Members Datasets Scaffolds Average Seq Length
194 145 181 312

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10019873|Ga0070681_100198734
Length 354
Sequence MARVPSGEAAGFCRRPIWRESGLKSLLSEFTINIGGERRDGDSLMKVFVTGGSGLVGSTTIDMLLARGDTVLAIDNYATGRRDNLSAAKSLTVHEGSIADKTLVDRLIGDFKPDAVIHTAASYKDPSDWYNDTLTNCVGTANVVKAAKDSGCNRLIYFQTALCYGVKPLEQPITLNHPINPVNSSYAISKTAGENYVQFSGMDWVTFRLANVVGPRGVSGPLAIFYQRLSQGKKCFVTPARRDFVFSQDLARNVVRAADGTGHGTYHFSSGKDVAIREVYDAMVIAMKLNDRPEPDLRPLGPDDAPSILLDPSRTFQDFGTIEFTPLSEIVSRSVDYYAKHGVEGGYTHLKIDK

Samples

Sample ID Description Type Environment
1 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
2 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
3 2643221651 Afipia sp. Root123D2 Isolate Unclassified
4 2643221734 Bosea sp. Root670 Isolate Unclassified
5 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
6 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
7 2904699407
8 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
9 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
10 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
11 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
15 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
79 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
80 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
86 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
87 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
89 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
90 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
91 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
92 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
93 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
96 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
97 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
98 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
99 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
102 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
103 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
104 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
105 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
106 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
124 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
125 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
126 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
130 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
134 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
135 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
136 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
137 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
138 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
139 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
142 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
143 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
144 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
145 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 93.78
Metatranscriptomes 0
Isolates 6.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.58
Nodule 3.61
Rhizoplane 1.03
Rhizosphere 86.6
Stem 0
Stem Tuber 0
Unclassified 6.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10015562 3300005327 Bacteria 6083
2 Ga0070658_10187209 3300005327 Bacteria 1744
3 Ga0070683_100054948 3300005329 Bacteria 3693
4 Ga0070690_100017728 3300005330 Bacteria 4289
5 Ga0070691_10012900 3300005341 Bacteria 3827
6 Ga0070668_100016030 3300005347 Bacteria 5605
7 Ga0070675_100139006 3300005354 Bacteria 2075
8 Ga0070659_100117149 3300005366 Unclassified 2154
9 Ga0070714_100195588 3300005435 Bacteria 1847
10 Ga0070701_10171414 3300005438 Bacteria 1264
11 Ga0070708_100034028 3300005445 Bacteria 4430
12 Ga0070681_10019873 3300005458 Bacteria 6729
13 Ga0070681_10049332 3300005458 Bacteria 4205
14 Ga0070681_10119677 3300005458 Bacteria 2569
15 Ga0070706_100004456 3300005467 Bacteria 13525
16 Ga0070706_100010232 3300005467 Bacteria 8720
17 Ga0070707_100000702 3300005468 Bacteria 33344
18 Ga0070698_100000153 3300005471 Bacteria 62826
19 Ga0070698_100010029 3300005471 Bacteria 10119
20 Ga0070699_100080233 3300005518 Unclassified 2844
21 Ga0070699_100125043 3300005518 Bacteria 2263
22 Ga0070684_100149378 3300005535 Bacteria 2116
23 Ga0070697_100014499 3300005536 Bacteria 6191
24 Ga0070697_100022069 3300005536 Bacteria 5051
25 Ga0070697_100023723 3300005536 Bacteria 4881
26 Ga0070697_100059719 3300005536 Bacteria 3106
27 Ga0070665_100644680 3300005548 Bacteria 1072
28 Ga0068854_100191633 3300005578 Bacteria 1602
29 Ga0068856_100313476 3300005614 Bacteria 1586
30 Ga0068858_100437580 3300005842 Bacteria 1259
31 Ga0068860_100000724 3300005843 Bacteria 37558
32 Ga0068862_100067077 3300005844 Bacteria 3093
33 Ga0068862_100328703 3300005844 Bacteria 1413
34 Ga0081538_10000242 3300005981 Bacteria 61803
35 Ga0075364_10004908 3300006051 Bacteria 7752
36 Ga0075428_100005777 3300006844 Bacteria 13737
37 Ga0075428_100048932 3300006844 Bacteria 4639
38 Ga0075428_100055582 3300006844 Bacteria 4337
39 Ga0075428_100101511 3300006844 Unclassified 3136
40 Ga0075428_100141398 3300006844 Bacteria 2617
41 Ga0075428_100332462 3300006844 Bacteria 1632
42 Ga0075430_100003424 3300006846 Bacteria 13262
43 Ga0075431_100000364 3300006847 Bacteria 35896
44 Ga0075431_100125515 3300006847 Bacteria 2648
45 Ga0075433_10013595 3300006852 Bacteria 6626
46 Ga0075434_100007274 3300006871 Bacteria 10240
47 Ga0075429_100165042 3300006880 Bacteria 1940
48 Ga0075429_100389545 3300006880 Bacteria 1220
49 Ga0068865_100319458 3300006881 Unclassified 1248
50 Ga0075436_100023596 3300006914 Unclassified 4225
51 Ga0075435_100017565 3300007076 Bacteria 5418
52 Ga0099795_10091212 3300007788 Bacteria 1181
53 Ga0111539_10030841 3300009094 Bacteria 6517
54 Ga0111539_10090876 3300009094 Bacteria 3588
55 Ga0111539_10176501 3300009094 Bacteria 2496
56 Ga0111539_10294919 3300009094 Bacteria 1887
57 Ga0111539_10539329 3300009094 Bacteria 1359
58 Ga0105247_10008462 3300009101 Bacteria 6266
59 Ga0114129_10089227 3300009147 Bacteria 4274
60 Ga0114129_10372749 3300009147 Bacteria 1886
61 Ga0105242_10419576 3300009176 Bacteria 1253
62 Ga0105249_10072983 3300009553 Bacteria 3174
63 Ga0099796_10027308 3300010159 Bacteria 1822
64 Ga0105239_10481953 3300010375 Bacteria 1409
65 Ga0157378_10050651 3300013297 Bacteria 3696
66 Ga0163162_10109373 3300013306 Bacteria 2861
67 Ga0163162_10195497 3300013306 Bacteria 2151
68 Ga0163162_10552419 3300013306 Bacteria 1280
69 Ga0213875_10001021 3300021388 Bacteria 19851
70 Ga0213875_10001615 3300021388 Bacteria 14240
71 Ga0209676_1020623 3300025292 Bacteria 2233
72 Ga0209025_1000010 3300025294 Bacteria 986612
73 Ga0207680_10225304 3300025903 Bacteria 1287
74 Ga0207699_10001963 3300025906 Bacteria 9712
75 Ga0207705_10000092 3300025909 Bacteria 109488
76 Ga0207684_10000220 3300025910 Bacteria 88359
77 Ga0207707_10021990 3300025912 Bacteria 5574
78 Ga0207707_10070489 3300025912 Bacteria 3046
79 Ga0207707_10124632 3300025912 Bacteria 2253
80 Ga0207663_10046724 3300025916 Bacteria 2669
81 Ga0207660_10000195 3300025917 Bacteria 38741
82 Ga0207652_10000782 3300025921 Bacteria 30446
83 Ga0207652_10002688 3300025921 Bacteria 14911
84 Ga0207646_10000148 3300025922 Bacteria 95989
85 Ga0207646_10003761 3300025922 Bacteria 16918
86 Ga0207700_10012750 3300025928 Bacteria 5435
87 Ga0207664_10114426 3300025929 Bacteria 2248
88 Ga0207664_10159089 3300025929 Bacteria 1925
89 Ga0207690_10161010 3300025932 Bacteria 1673
90 Ga0207706_10177107 3300025933 Bacteria 1873
91 Ga0207702_10293668 3300026078 Bacteria 1540
92 Ga0209971_1009859 3300027682 Bacteria 2261
93 Ga0209998_10000076 3300027717 Bacteria 39447
94 Ga0209974_10000055 3300027876 Bacteria 29347
95 Ga0207428_10002038 3300027907 Bacteria 20419
96 Ga0207428_10023832 3300027907 Bacteria 5141
97 Ga0268264_10000096 3300028381 Bacteria 230188
98 Ga0265319_1006014 3300028563 Bacteria 5701
99 Ga0265339_10001034 3300031249 Bacteria 21208
100 Ga0307408_100212691 3300031548 Bacteria 1572
101 Ga0307406_10075368 3300031901 Bacteria 2225
102 Ga0307406_10140054 3300031901 Bacteria 1711
103 Ga0307412_10054110 3300031911 Bacteria 2663
104 Ga0307414_10117159 3300032004 Bacteria 2040
105 Ga0307415_100218028 3300032126 Bacteria 1527
106 Ga0373945_0085593 3300035116 Bacteria 1214
107 Ga0373946_0113349 3300035171 Bacteria 1230
108 Ga0373935_0145653 3300035692 Bacteria 1603
109 Ga0373947_0193641 3300035725 Bacteria 1327
110 Ga0395899_0000008 3300037312 Bacteria 567572
111 Ga0395900_0001612 3300037418 Bacteria 26597
112 Ga0395900_0002272 3300037418 Bacteria 21347
113 Ga0395900_0174819 3300037418 Bacteria 2184
114 Ga0395898_0000072 3300037466 Bacteria 249505
115 Ga0395898_0013143 3300037466 Bacteria 8533
116 Ga0395898_0017850 3300037466 Bacteria 7239
117 Ga0395898_0227484 3300037466 Bacteria 1779
118 Ga0395905_0210263 3300037471 Bacteria 1823
119 Ga0395905_0311356 3300037471 Bacteria 1463
120 Ga0436364_0103806 3300037853 Bacteria 67638
121 Ga0436364_0206572 3300037853 Bacteria 30473
122 Ga0436364_0505035 3300037853 Bacteria 2434
123 Ga0395901_0000003 3300038443 Bacteria 701538
124 Ga0400490_12831 3300038726 Bacteria 6069
125 Ga0451577_0000011 3300042876 Bacteria 597389
126 Ga0453683_0000313 3300044673 Bacteria 60061
127 Ga0466961_0253216 3300044693 Bacteria 1081
128 Ga0466963_0119175 3300044694 Bacteria 1815
129 Ga0453684_0000087 3300044712 Bacteria 395597
130 Ga0466971_0075953 3300044719 Bacteria 1528
131 Ga0466957_0040208 3300044842 Bacteria 2824
132 Ga0466960_0020370 3300044901 Bacteria 2937
133 Ga0466959_0000166 3300045049 Bacteria 43730
134 Ga0451576_0053502 3300045051 Bacteria 4229
135 Ga0466958_0001727 3300045836 Bacteria 10568
136 Ga0466967_0059927 3300045976 Bacteria 3371
137 Ga0466967_0144647 3300045976 Bacteria 2217
138 Ga0495652_0186868 3300046529 Bacteria 1585
139 Ga0496112_0525244 3300048915 Bacteria 1118
140 Ga0496115_0040416 3300048918 Bacteria 3708
141 Ga0496120_0133764 3300048923 Bacteria 1267
142 Ga0496121_0379671 3300048924 Bacteria 932
143 Ga0501031_0020104 3300049568 Unclassified 4351
144 Ga0501032_0038490 3300049569 Bacteria 3257
145 Ga0501034_0156226 3300049571 Bacteria 2255
146 Ga0501036_0395098 3300049572 Unclassified 1154
147 Ga0501037_0032416 3300049573 Bacteria 3858
148 Ga0501037_0098550 3300049573 Bacteria 2111
149 Ga0501038_0160307 3300049574 Bacteria 1828
150 Ga0501041_0012185 3300049577 Bacteria 5092
151 Ga0501042_0167870 3300049578 Unclassified 1583
152 Ga0501046_0102432 3300049580 Bacteria 2195
153 Ga0501046_0104355 3300049580 Bacteria 2172
154 Ga0501048_0027678 3300049582 Unclassified 4117
155 Ga0501048_0411431 3300049582 Bacteria 967
156 Ga0501074_0071258 3300049590 Bacteria 2499
157 Ga0501075_0001765 3300049591 Bacteria 14216
158 Ga0501076_0145032 3300049592 Bacteria 1930
159 Ga0501079_0156691 3300049741 Bacteria 1775
160 Ga0501035_0238299 3300049822 Bacteria 1548
161 Ga0501044_0018741 3300049823 Bacteria 7413
162 Ga0501045_0023823 3300049824 Bacteria 4393
163 nmdc:mga00v17_3838_c1 3300050491 Bacteria 7757
164 nmdc:mga09592_125150_c1 3300050508 Unclassified 2209
165 nmdc:mga0qj67_5936_c1 3300050509 Bacteria 8947
166 nmdc:mga0qj67_79992_c1 3300050509 Bacteria 2618
167 nmdc:mga06r32_187048_c1 3300050510 Bacteria 2058
168 nmdc:mga06r32_4893_c1 3300050510 Bacteria 12064
169 nmdc:mga08y16_206697_c1 3300050511 Bacteria 2034
170 nmdc:mga08y16_2770_c1 3300050511 Bacteria 17963
171 nmdc:mga08y16_427295_c1 3300050511 Bacteria 1353
172 nmdc:mga0n895_129548_c1 3300050512 Bacteria 2548
173 nmdc:mga0n895_236109_c1 3300050512 Bacteria 1855
174 nmdc:mga0rr50_42195_c1 3300050513 Bacteria 3330
175 nmdc:mga08x19_148530_c1 3300050514 Unclassified 1586
176 nmdc:mga0a205_46055_c1 3300050515 Bacteria 4206
177 Ga0495601_0041685 3300053077 Bacteria 2879
178 Ga0495619_0005061 3300053085 Bacteria 8372
179 Ga0500572_000506 3300053111 Bacteria 13396
180 Ga0466962_0040764 3300061719 Bacteria 2222
181 Ga0530510_0167229 3300061734 Bacteria 1628

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045976 Ga0466967_0144647 Ga0466967_0144647_225_1187 279
2 3300005327 Ga0070658_10187209 Ga0070658_101872092 289
3 3300005329 Ga0070683_100054948 Ga0070683_1000549482 289
4 3300005844 Ga0068862_100328703 Ga0068862_1003287032 289
5 3300006844 Ga0075428_100005777 Ga0075428_10000577713 289
6 3300010375 Ga0105239_10481953 Ga0105239_104819532 289
7 3300027907 Ga0207428_10023832 Ga0207428_100238325 289
8 iso_pu_bacteria 2884298095 2884299452 290
9 3300048924 Ga0496121_0379671 Ga0496121_0379671_31_912 292
10 3300049582 Ga0501048_0411431 Ga0501048_0411431_40_924 292
11 3300005981 Ga0081538_10000242 Ga0081538_100002426 306
12 iso_pu_bacteria 2513237137 2513862258 306
13 iso_pu_bacteria 2524023228 2524535655 306
14 iso_pu_bacteria 2643221651 2644287635 306
15 iso_pu_bacteria 2643221734 2644736335 306
16 iso_pu_bacteria 2881101125 2881103466 306
17 iso_pu_bacteria 2904699407 2904705378 306
18 iso_pu_bacteria 2935630451 2935635920 306
19 iso_pu_bacteria 2941507105 2941512551 306
20 iso_pu_bacteria 2941515067 2941520252 306
21 iso_pu_bacteria 2941523033 2941528352 306
22 iso_pu_bacteria 8006933436 8006942985 306
23 iso_pu_bacteria 8006973647 8006982705 306
24 3300005467 Ga0070706_100010232 Ga0070706_1000102324 308
25 3300005468 Ga0070707_100000702 Ga0070707_10000070217 308
26 3300005471 Ga0070698_100000153 Ga0070698_10000015325 308
27 3300005535 Ga0070684_100149378 Ga0070684_1001493782 308
28 3300005536 Ga0070697_100059719 Ga0070697_1000597192 308
29 3300025922 Ga0207646_10000148 Ga0207646_1000014836 308
30 3300037466 Ga0395898_0017850 Ga0395898_0017850_1744_2679 308
31 3300005438 Ga0070701_10171414 Ga0070701_101714141 309
32 3300005548 Ga0070665_100644680 Ga0070665_1006446801 309
33 3300005842 Ga0068858_100437580 Ga0068858_1004375802 309
34 3300009094 Ga0111539_10030841 Ga0111539_100308416 309
35 3300025929 Ga0207664_10114426 Ga0207664_101144261 309
36 3300031901 Ga0307406_10140054 Ga0307406_101400541 309
37 3300044694 Ga0466963_0119175 Ga0466963_0119175_204_1139 309
38 3300044719 Ga0466971_0075953 Ga0466971_0075953_155_1090 309
39 3300044842 Ga0466957_0040208 Ga0466957_0040208_1588_2523 309
40 3300044901 Ga0466960_0020370 Ga0466960_0020370_816_1745 309
41 3300045976 Ga0466967_0059927 Ga0466967_0059927_1623_2558 309
42 3300048915 Ga0496112_0525244 Ga0496112_0525244_77_1009 309
43 3300048918 Ga0496115_0040416 Ga0496115_0040416_968_1900 309
44 3300061719 Ga0466962_0040764 Ga0466962_0040764_854_1789 309
45 3300005327 Ga0070658_10015562 Ga0070658_100155623 310
46 3300005330 Ga0070690_100017728 Ga0070690_1000177283 310
47 3300005341 Ga0070691_10012900 Ga0070691_100129003 310
48 3300005347 Ga0070668_100016030 Ga0070668_1000160304 310
49 3300005354 Ga0070675_100139006 Ga0070675_1001390062 310
50 3300005366 Ga0070659_100117149 Ga0070659_1001171492 310
51 3300005435 Ga0070714_100195588 Ga0070714_1001955882 310
52 3300005445 Ga0070708_100034028 Ga0070708_1000340282 310
53 3300005458 Ga0070681_10019873 Ga0070681_100198734 310
54 3300005458 Ga0070681_10049332 Ga0070681_100493323 310
55 3300005458 Ga0070681_10119677 Ga0070681_101196772 310
56 3300005467 Ga0070706_100004456 Ga0070706_1000044564 310
57 3300005471 Ga0070698_100010029 Ga0070698_1000100296 310
58 3300005518 Ga0070699_100080233 Ga0070699_1000802332 310
59 3300005518 Ga0070699_100125043 Ga0070699_1001250432 310
60 3300005536 Ga0070697_100014499 Ga0070697_1000144994 310
61 3300005536 Ga0070697_100022069 Ga0070697_1000220691 310
62 3300005536 Ga0070697_100023723 Ga0070697_1000237234 310
63 3300005578 Ga0068854_100191633 Ga0068854_1001916332 310
64 3300005614 Ga0068856_100313476 Ga0068856_1003134762 310
65 3300005843 Ga0068860_100000724 Ga0068860_10000072431 310
66 3300005844 Ga0068862_100067077 Ga0068862_1000670772 310
67 3300006051 Ga0075364_10004908 Ga0075364_100049087 310
68 3300006844 Ga0075428_100048932 Ga0075428_1000489322 310
69 3300006844 Ga0075428_100055582 Ga0075428_1000555822 310
70 3300006844 Ga0075428_100101511 Ga0075428_1001015113 310
71 3300006844 Ga0075428_100141398 Ga0075428_1001413981 310
72 3300006844 Ga0075428_100332462 Ga0075428_1003324622 310
73 3300006846 Ga0075430_100003424 Ga0075430_1000034243 310
74 3300006847 Ga0075431_100000364 Ga0075431_1000003649 310
75 3300006847 Ga0075431_100125515 Ga0075431_1001255152 310
76 3300006852 Ga0075433_10013595 Ga0075433_100135955 310
77 3300006871 Ga0075434_100007274 Ga0075434_1000072742 310
78 3300006880 Ga0075429_100165042 Ga0075429_1001650422 310
79 3300006880 Ga0075429_100389545 Ga0075429_1003895452 310
80 3300006881 Ga0068865_100319458 Ga0068865_1003194581 310
81 3300006914 Ga0075436_100023596 Ga0075436_1000235962 310
82 3300007076 Ga0075435_100017565 Ga0075435_1000175653 310
83 3300007788 Ga0099795_10091212 Ga0099795_100912121 310
84 3300009094 Ga0111539_10090876 Ga0111539_100908763 310
85 3300009094 Ga0111539_10176501 Ga0111539_101765012 310
86 3300009094 Ga0111539_10294919 Ga0111539_102949192 310
87 3300009094 Ga0111539_10539329 Ga0111539_105393292 310
88 3300009101 Ga0105247_10008462 Ga0105247_100084623 310
89 3300009147 Ga0114129_10089227 Ga0114129_100892272 310
90 3300009147 Ga0114129_10372749 Ga0114129_103727491 310
91 3300009176 Ga0105242_10419576 Ga0105242_104195761 310
92 3300009553 Ga0105249_10072983 Ga0105249_100729832 310
93 3300010159 Ga0099796_10027308 Ga0099796_100273082 310
94 3300013297 Ga0157378_10050651 Ga0157378_100506512 310
95 3300013306 Ga0163162_10109373 Ga0163162_101093732 310
96 3300013306 Ga0163162_10195497 Ga0163162_101954972 310
97 3300013306 Ga0163162_10552419 Ga0163162_105524192 310
98 3300021388 Ga0213875_10001021 Ga0213875_1000102113 310
99 3300021388 Ga0213875_10001615 Ga0213875_100016154 310
100 3300025292 Ga0209676_1020623 Ga0209676_10206232 310
101 3300025294 Ga0209025_1000010 Ga0209025_1000010725 310
102 3300025903 Ga0207680_10225304 Ga0207680_102253042 310
103 3300025906 Ga0207699_10001963 Ga0207699_100019632 310
104 3300025909 Ga0207705_10000092 Ga0207705_1000009213 310
105 3300025910 Ga0207684_10000220 Ga0207684_1000022087 310
106 3300025912 Ga0207707_10021990 Ga0207707_100219902 310
107 3300025912 Ga0207707_10070489 Ga0207707_100704892 310
108 3300025912 Ga0207707_10124632 Ga0207707_101246322 310
109 3300025916 Ga0207663_10046724 Ga0207663_100467241 310
110 3300025917 Ga0207660_10000195 Ga0207660_100001952 310
111 3300025921 Ga0207652_10000782 Ga0207652_1000078219 310
112 3300025921 Ga0207652_10002688 Ga0207652_1000268812 310
113 3300025922 Ga0207646_10003761 Ga0207646_100037614 310
114 3300025928 Ga0207700_10012750 Ga0207700_100127502 310
115 3300025929 Ga0207664_10159089 Ga0207664_101590892 310
116 3300025932 Ga0207690_10161010 Ga0207690_101610102 310
117 3300025933 Ga0207706_10177107 Ga0207706_101771072 310
118 3300026078 Ga0207702_10293668 Ga0207702_102936682 310
119 3300027682 Ga0209971_1009859 Ga0209971_10098592 310
120 3300027717 Ga0209998_10000076 Ga0209998_100000763 310
121 3300027876 Ga0209974_10000055 Ga0209974_1000005520 310
122 3300027907 Ga0207428_10002038 Ga0207428_1000203812 310
123 3300028381 Ga0268264_10000096 Ga0268264_1000009637 310
124 3300028563 Ga0265319_1006014 Ga0265319_10060143 310
125 3300031249 Ga0265339_10001034 Ga0265339_100010342 310
126 3300031548 Ga0307408_100212691 Ga0307408_1002126912 310
127 3300031901 Ga0307406_10075368 Ga0307406_100753682 310
128 3300031911 Ga0307412_10054110 Ga0307412_100541102 310
129 3300032004 Ga0307414_10117159 Ga0307414_101171592 310
130 3300032126 Ga0307415_100218028 Ga0307415_1002180282 310
131 3300035116 Ga0373945_0085593 Ga0373945_0085593_72_1010 310
132 3300035171 Ga0373946_0113349 Ga0373946_0113349_65_1003 310
133 3300035692 Ga0373935_0145653 Ga0373935_0145653_143_1081 310
134 3300035725 Ga0373947_0193641 Ga0373947_0193641_351_1289 310
135 3300037312 Ga0395899_0000008 Ga0395899_0000008_107588_108526 310
136 3300037418 Ga0395900_0001612 Ga0395900_0001612_20538_21476 310
137 3300037418 Ga0395900_0002272 Ga0395900_0002272_15013_15951 310
138 3300037418 Ga0395900_0174819 Ga0395900_0174819_1089_2033 310
139 3300037466 Ga0395898_0000072 Ga0395898_0000072_144600_145538 310
140 3300037466 Ga0395898_0013143 Ga0395898_0013143_1622_2566 310
141 3300037466 Ga0395898_0227484 Ga0395898_0227484_71_1006 310
142 3300037471 Ga0395905_0210263 Ga0395905_0210263_474_1418 310
143 3300037471 Ga0395905_0311356 Ga0395905_0311356_91_1026 310
144 3300037853 Ga0436364_0103806 Ga0436364_0103806_8119_9057 310
145 3300037853 Ga0436364_0206572 Ga0436364_0206572_11961_12920 310
146 3300037853 Ga0436364_0505035 Ga0436364_0505035_629_1591 310
147 3300038443 Ga0395901_0000003 Ga0395901_0000003_289057_289995 310
148 3300038726 Ga0400490_12831 Ga0400490_12831_3699_4640 310
149 3300042876 Ga0451577_0000011 Ga0451577_0000011_336524_337456 310
150 3300044673 Ga0453683_0000313 Ga0453683_0000313_10743_11675 310
151 3300044693 Ga0466961_0253216 Ga0466961_0253216_104_1042 310
152 3300044712 Ga0453684_0000087 Ga0453684_0000087_10631_11563 310
153 3300045049 Ga0466959_0000166 Ga0466959_0000166_8864_9802 310
154 3300045051 Ga0451576_0053502 Ga0451576_0053502_877_1815 310
155 3300045836 Ga0466958_0001727 Ga0466958_0001727_4662_5600 310
156 3300046529 Ga0495652_0186868 Ga0495652_0186868_148_1107 310
157 3300048923 Ga0496120_0133764 Ga0496120_0133764_58_993 310
158 3300049568 Ga0501031_0020104 Ga0501031_0020104_107_1060 310
159 3300049569 Ga0501032_0038490 Ga0501032_0038490_1804_2757 310
160 3300049571 Ga0501034_0156226 Ga0501034_0156226_1095_2054 310
161 3300049572 Ga0501036_0395098 Ga0501036_0395098_159_1112 310
162 3300049573 Ga0501037_0032416 Ga0501037_0032416_2321_3280 310
163 3300049573 Ga0501037_0098550 Ga0501037_0098550_681_1634 310
164 3300049574 Ga0501038_0160307 Ga0501038_0160307_641_1594 310
165 3300049577 Ga0501041_0012185 Ga0501041_0012185_398_1351 310
166 3300049578 Ga0501042_0167870 Ga0501042_0167870_178_1131 310
167 3300049580 Ga0501046_0102432 Ga0501046_0102432_583_1521 310
168 3300049580 Ga0501046_0104355 Ga0501046_0104355_499_1452 310
169 3300049582 Ga0501048_0027678 Ga0501048_0027678_3005_3958 310
170 3300049590 Ga0501074_0071258 Ga0501074_0071258_524_1465 310
171 3300049591 Ga0501075_0001765 Ga0501075_0001765_1249_2187 310
172 3300049592 Ga0501076_0145032 Ga0501076_0145032_951_1889 310
173 3300049741 Ga0501079_0156691 Ga0501079_0156691_479_1417 310
174 3300049822 Ga0501035_0238299 Ga0501035_0238299_423_1367 310
175 3300049823 Ga0501044_0018741 Ga0501044_0018741_3287_4219 310
176 3300049824 Ga0501045_0023823 Ga0501045_0023823_2318_3256 310
177 3300050491 nmdc:mga00v17_3838_c1 nmdc:mga00v17_3838_c1_291_1226 310
178 3300050508 nmdc:mga09592_125150_c1 nmdc:mga09592_125150_c1_202_1149 310
179 3300050509 nmdc:mga0qj67_5936_c1 nmdc:mga0qj67_5936_c1_6422_7360 310
180 3300050509 nmdc:mga0qj67_79992_c1 nmdc:mga0qj67_79992_c1_175_1128 310
181 3300050510 nmdc:mga06r32_187048_c1 nmdc:mga06r32_187048_c1_771_1724 310
182 3300050510 nmdc:mga06r32_4893_c1 nmdc:mga06r32_4893_c1_10529_11467 310
183 3300050511 nmdc:mga08y16_206697_c1 nmdc:mga08y16_206697_c1_1066_2013 310
184 3300050511 nmdc:mga08y16_2770_c1 nmdc:mga08y16_2770_c1_11477_12412 310
185 3300050511 nmdc:mga08y16_427295_c1 nmdc:mga08y16_427295_c1_373_1326 310
186 3300050512 nmdc:mga0n895_129548_c1 nmdc:mga0n895_129548_c1_159_1106 310
187 3300050512 nmdc:mga0n895_236109_c1 nmdc:mga0n895_236109_c1_208_1146 310
188 3300050513 nmdc:mga0rr50_42195_c1 nmdc:mga0rr50_42195_c1_1227_2174 310
189 3300050514 nmdc:mga08x19_148530_c1 nmdc:mga08x19_148530_c1_449_1387 310
190 3300050515 nmdc:mga0a205_46055_c1 nmdc:mga0a205_46055_c1_1952_2899 310
191 3300053077 Ga0495601_0041685 Ga0495601_0041685_1377_2336 310
192 3300053085 Ga0495619_0005061 Ga0495619_0005061_1011_1970 310
193 3300053111 Ga0500572_000506 Ga0500572_000506_4523_5458 310
194 3300061734 Ga0530510_0167229 Ga0530510_0167229_642_1580 310

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

47

268

0.9

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

48

307

0.89

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

48

258

0.87

PF04321

RmlD_sub_bind

RmlD substrate binding domain

45

318

0.85

PF07993

NAD_binding_4

Male sterility protein

101

255

0.83

PF13460

NAD_binding_10

NAD(P)H-binding

51

225

0.8

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

47

301

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
2q1w-assembly2.cif.gz_A-2 crystal structure of the bordetella bronchiseptica enzyme wbmh in complex with nad+ 0.9894 2 298
2q1w-assembly1.cif.gz_B crystal structure of the bordetella bronchiseptica enzyme wbmh in complex with nad+ 0.9884 2 298
2q1w-assembly1.cif.gz_C crystal structure of the bordetella bronchiseptica enzyme wbmh in complex with nad+ 0.9781 2 298
2q1w-assembly2.cif.gz_A-2 crystal structure of the bordetella bronchiseptica enzyme wbmh in complex with nad+ 0.9764 2 298
2q1w-assembly1.cif.gz_B crystal structure of the bordetella bronchiseptica enzyme wbmh in complex with nad+ 0.9721 2 298
ID Description Score Start End Superfamily
2q1wB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9884 2 298 3.40.50.720
2q1wB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9721 2 298 3.40.50.720
af_B0G160_35_582_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9441 3 32 3.50.50.60
6cr0A01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.942 2 32 3.50.50.60
af_Q54HR9_1_452_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9366 3 32 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A4Q6D4N6-F1-model_v4 deleted 0.9556 60 310
AF-A0A4Q6D4N6-F1-model_v4 deleted 0.9372 60 310
AF-A0A7J4PIH0-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9255 1 156
AF-A0A1F9LB94-F1-model_v4 deleted 0.9212 1 296
AF-A0A1F5TS51-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9211 2 297

Feature Viewer

pLDDT pTM Quality
91.97 0.91 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map