F290886

General Info

Members Datasets Scaffolds Average Seq Length
189 147 378 123

Family's Representative Sequence

Representative Sequence 3300009176|Ga0105242_12372768|Ga0105242_123727681
Length 144
Sequence VTVSEARERTNRAMLRVRDTLDRDYDQVVDIEALARLVHLSPDHLIRTFRAVFGETPHRYLQRRRVERSMFLLRETDRSVTDICLDVGFSSLGTFEGHGPVVAPHCVQLAAMRPRVGAAEAGEAAGFADFSSFGEASAPMAAVG

Samples

Sample ID Description Type Environment
1 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003349 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
76 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
84 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
91 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
92 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
93 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
94 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
95 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
96 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
97 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
98 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
99 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
100 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
101 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
102 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
103 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
104 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
107 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
108 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
109 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
110 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
111 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
112 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
113 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
114 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
118 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
119 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
120 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
129 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
130 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
131 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
132 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
133 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
134 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
135 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
136 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
139 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
140 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
141 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
142 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
143 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
144 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
145 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
146 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
147 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.88
Rhizosphere 91.53
Stem 0
Stem Tuber 0
Unclassified 0.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105242_12372768 3300009176 Bacteria 577
2 JGI24034J26672_10020773 3300002239 Bacteria 1030
3 rootL2_10003952 3300003322 Bacteria 4746
4 rootH1_10001222 3300003323 Bacteria 3567
5 JGI26129J50193_1002223 3300003349 Bacteria 1363
6 JGI26129J50193_1003837 3300003349 Bacteria 1057
7 Ga0065715_10396432 3300005293 Bacteria 887
8 Ga0065707_10379552 3300005295 Bacteria 879
9 Ga0070676_10043642 3300005328 Bacteria 2607
10 Ga0070680_100000134 3300005336 Bacteria 44837
11 Ga0070680_100005517 3300005336 Bacteria 9572
12 Ga0068868_100287637 3300005338 Bacteria 1393
13 Ga0070691_10503313 3300005341 Bacteria 701
14 Ga0070692_10012877 3300005345 Bacteria 3885
15 Ga0070675_101113737 3300005354 Unclassified 726
16 Ga0070659_101148649 3300005366 Bacteria 686
17 Ga0070705_100107853 3300005440 Bacteria 1773
18 Ga0070705_100198419 3300005440 Bacteria 1374
19 Ga0070694_100080433 3300005444 Bacteria 2264
20 Ga0070694_100239883 3300005444 Bacteria 1367
21 Ga0070706_100046225 3300005467 Bacteria 4019
22 Ga0070706_100250735 3300005467 Bacteria 1653
23 Ga0070707_100020453 3300005468 Bacteria 6243
24 Ga0070698_100025807 3300005471 Bacteria 6124
25 Ga0070698_100886444 3300005471 Bacteria 838
26 Ga0070699_100242484 3300005518 Bacteria 1609
27 Ga0070679_100138378 3300005530 Bacteria 2416
28 Ga0070679_101176262 3300005530 Bacteria 712
29 Ga0070695_100323299 3300005545 Bacteria 1147
30 Ga0070695_100401212 3300005545 Bacteria 1039
31 Ga0070696_100022104 3300005546 Bacteria 4319
32 Ga0070696_100888394 3300005546 Bacteria 739
33 Ga0070693_100395632 3300005547 Bacteria 957
34 Ga0070704_100273126 3300005549 Bacteria 1397
35 Ga0068852_100587990 3300005616 Bacteria 1117
36 Ga0068859_100288829 3300005617 Bacteria 1733
37 Ga0068864_100603120 3300005618 Bacteria 1066
38 Ga0068861_101450529 3300005719 Bacteria 672
39 Ga0068860_100768422 3300005843 Bacteria 976
40 Ga0081538_10153268 3300005981 Bacteria 1039
41 Ga0081539_10005653 3300005985 Bacteria 12565
42 Ga0075433_11072520 3300006852 Bacteria 701
43 Ga0075434_100275577 3300006871 Bacteria 1701
44 Ga0075434_100303313 3300006871 Bacteria 1617
45 Ga0075434_101058480 3300006871 Bacteria 825
46 Ga0075436_100692604 3300006914 Bacteria 755
47 Ga0097620_100288820 3300006931 Bacteria 1733
48 Ga0105250_10506812 3300009092 Bacteria 548
49 Ga0105245_10037573 3300009098 Bacteria 4306
50 Ga0114129_10351993 3300009147 Bacteria 1951
51 Ga0114129_10747496 3300009147 Bacteria 1252
52 Ga0105243_10178322 3300009148 Bacteria 1846
53 Ga0105242_10408009 3300009176 Bacteria 1270
54 Ga0105239_12716133 3300010375 Bacteria 578
55 Ga0105246_10068543 3300011119 Bacteria 2489
56 Ga0105246_10105570 3300011119 Bacteria 2059
57 Ga0163162_10453498 3300013306 Bacteria 1414
58 Ga0163162_11269761 3300013306 Bacteria 836
59 Ga0157372_12237577 3300013307 Bacteria 628
60 Ga0157376_12151789 3300014969 Bacteria 596
61 Ga0207692_10695074 3300025898 Bacteria 660
62 Ga0207645_10052481 3300025907 Bacteria 2605
63 Ga0207684_10482596 3300025910 Bacteria 1063
64 Ga0207660_10000003 3300025917 Bacteria 675759
65 Ga0207660_10001691 3300025917 Bacteria 14787
66 Ga0207660_11050565 3300025917 Bacteria 664
67 Ga0207662_10028035 3300025918 Bacteria 3253
68 Ga0207652_10151457 3300025921 Bacteria 2077
69 Ga0207646_10033630 3300025922 Bacteria 4636
70 Ga0207694_11116988 3300025924 Bacteria 667
71 Ga0207687_10383846 3300025927 Bacteria 1152
72 Ga0207700_10956345 3300025928 Bacteria 767
73 Ga0207709_10122895 3300025935 Bacteria 1756
74 Ga0207709_10370465 3300025935 Bacteria 1087
75 Ga0207704_10145733 3300025938 Bacteria 1663
76 Ga0207665_10155630 3300025939 Bacteria 1640
77 Ga0207691_10219299 3300025940 Bacteria 1650
78 Ga0207689_10253862 3300025942 Bacteria 1454
79 Ga0207689_10514778 3300025942 Bacteria 1003
80 Ga0207640_10698121 3300025981 Bacteria 870
81 Ga0207674_11282509 3300026116 Bacteria 702
82 Ga0207675_100204642 3300026118 Bacteria 1897
83 Ga0209969_1007470 3300027360 Bacteria 1544
84 Ga0209981_1019993 3300027378 Bacteria 953
85 Ga0209995_1016736 3300027471 Bacteria 1205
86 Ga0209970_1038495 3300027614 Bacteria 846
87 Ga0209971_1007405 3300027682 Bacteria 2605
88 Ga0209998_10000414 3300027717 Bacteria 12127
89 Ga0209974_10000763 3300027876 Bacteria 10995
90 Ga0268265_11625638 3300028380 Bacteria 651
91 Ga0268264_10733166 3300028381 Bacteria 983
92 Ga0265336_10029724 3300028666 Bacteria 1704
93 Ga0265338_10879672 3300028800 Bacteria 611
94 Ga0307408_101102767 3300031548 Bacteria 736
95 Ga0265313_10112552 3300031595 Bacteria 1195
96 Ga0307405_10289164 3300031731 Bacteria 1238
97 Ga0307410_10395595 3300031852 Bacteria 1115
98 Ga0307406_10275506 3300031901 Bacteria 1280
99 Ga0307407_10528513 3300031903 Bacteria 869
100 Ga0307416_100001121 3300032002 Bacteria 14392
101 Ga0307416_100329752 3300032002 Bacteria 1533
102 Ga0307415_100015885 3300032126 Bacteria 4471
103 Ga0307415_100018976 3300032126 Bacteria 4166
104 Ga0373952_0032401 3300035092 Bacteria 1167
105 Ga0373943_0194281 3300035170 Bacteria 1121
106 Ga0373947_0088469 3300035725 Bacteria 1928
107 Ga0373937_0875094 3300036401 Bacteria 847
108 Ga0395899_0279289 3300037312 Bacteria 1137
109 Ga0395900_0237410 3300037418 Bacteria 1830
110 Ga0395898_1233554 3300037466 Bacteria 678
111 Ga0395898_1562688 3300037466 Bacteria 585
112 Ga0451798_0451218 3300041458 Bacteria 922
113 Ga0451807_1216422 3300041486 Bacteria 909
114 Ga0451853_0125386 3300041512 Bacteria 1143
115 Ga0439463_125679 3300042016 Bacteria 663
116 Ga0450920_003227 3300042122 Bacteria 2815
117 Ga0450920_068502 3300042122 Bacteria 721
118 Ga0450904_012477 3300042139 Bacteria 843
119 Ga0450910_000682 3300042147 Bacteria 4073
120 Ga0451577_0008034 3300042876 Bacteria 10300
121 Ga0466965_0185342 3300044683 Bacteria 1099
122 Ga0466965_0780533 3300044683 Bacteria 552
123 Ga0453684_0182203 3300044712 Bacteria 2465
124 Ga0466971_0128189 3300044719 Bacteria 1177
125 Ga0466970_0344835 3300044765 Bacteria 845
126 Ga0466970_0462149 3300044765 Bacteria 728
127 Ga0466957_0150802 3300044842 Bacteria 1503
128 Ga0466957_1251572 3300044842 Bacteria 538
129 Ga0466960_0294699 3300044901 Bacteria 912
130 Ga0466960_0396058 3300044901 Bacteria 795
131 Ga0466959_0006226 3300045049 Bacteria 8247
132 Ga0466967_0434336 3300045976 Bacteria 1281
133 Ga0466967_1085827 3300045976 Bacteria 797
134 Ga0466967_1882468 3300045976 Bacteria 595
135 Ga0495607_0442541 3300046501 Bacteria 585
136 Ga0495608_0528562 3300046511 Bacteria 712
137 Ga0495643_0391371 3300046522 Bacteria 615
138 Ga0495640_0696330 3300046533 Bacteria 610
139 Ga0495667_0308773 3300046559 Bacteria 1002
140 Ga0495658_0365286 3300046683 Bacteria 918
141 Ga0495680_0302705 3300047322 Bacteria 1122
142 Ga0496100_0117833 3300048903 Bacteria 1854
143 Ga0496101_0036169 3300048904 Bacteria 3497
144 Ga0496102_0002886 3300048905 Bacteria 14573
145 Ga0496102_0378033 3300048905 Bacteria 1333
146 Ga0496102_1056415 3300048905 Bacteria 732
147 Ga0496103_0019250 3300048906 Bacteria 4099
148 Ga0496106_0870751 3300048909 Bacteria 712
149 Ga0496107_0521363 3300048910 Bacteria 881
150 Ga0496112_0697412 3300048915 Bacteria 943
151 Ga0496113_0263493 3300048916 Bacteria 1377
152 Ga0496114_0009444 3300048917 Bacteria 7744
153 Ga0501031_0170940 3300049568 Bacteria 1420
154 Ga0501034_0846088 3300049571 Bacteria 805
155 Ga0501039_0249384 3300049575 Bacteria 1396
156 Ga0501040_0126592 3300049576 Bacteria 1795
157 Ga0501041_0260251 3300049577 Bacteria 1091
158 Ga0501041_0282300 3300049577 Bacteria 1045
159 Ga0501046_0559203 3300049580 Bacteria 815
160 Ga0501067_0007514 3300049583 Bacteria 6056
161 Ga0501067_0087518 3300049583 Bacteria 1728
162 Ga0501067_0305136 3300049583 Bacteria 886
163 Ga0501068_0363925 3300049584 Bacteria 930
164 Ga0501069_0002272 3300049585 Bacteria 9708
165 Ga0501069_0009187 3300049585 Bacteria 5217
166 Ga0501069_0246327 3300049585 Bacteria 1042
167 Ga0501069_0944192 3300049585 Bacteria 526
168 Ga0501070_0160990 3300049586 Bacteria 1850
169 Ga0501070_0427655 3300049586 Bacteria 1069
170 Ga0501071_0486192 3300049587 Bacteria 946
171 Ga0501075_0028583 3300049591 Bacteria 4116
172 Ga0501076_0416040 3300049592 Bacteria 1106
173 Ga0501080_0306779 3300049742 Bacteria 1439
174 Ga0501081_0090259 3300049743 Bacteria 2154
175 Ga0501035_1022589 3300049822 Bacteria 649
176 nmdc:mga05p37_113903_c1 3300050507 Bacteria 3325
177 nmdc:mga05p37_1525859_c1 3300050507 Bacteria 663
178 nmdc:mga0a205_1206602_c1 3300050515 Bacteria 604
179 nmdc:mga0a205_68054_c1 3300050515 Bacteria 3439
180 Ga0495655_0014696 3300053083 Bacteria 1648
181 Ga0501084_0040505 3300054114 Bacteria 3898
182 Ga0590071_031434 3300059421 Bacteria 1265
183 Ga0590074_006344 3300059423 Bacteria 1963
184 Ga0590077_030571 3300059426 Bacteria 1175
185 Ga0501082_0255883 3300060353 Bacteria 1523
186 Ga0466962_0586884 3300061719 Bacteria 567
187 Ga0530510_0012402 3300061734 Bacteria 5988
188 Ga0530510_0037472 3300061734 Bacteria 3497
189 Ga0530510_0777835 3300061734 Bacteria 730
190 Ga0105242_12372768
191 JGI24034J26672_10020773
192 rootL2_10003952
193 rootH1_10001222
194 JGI26129J50193_1002223
195 JGI26129J50193_1003837
196 Ga0065715_10396432
197 Ga0065707_10379552
198 Ga0070676_10043642
199 Ga0070680_100000134
200 Ga0070680_100005517
201 Ga0068868_100287637
202 Ga0070691_10503313
203 Ga0070692_10012877
204 Ga0070675_101113737
205 Ga0070659_101148649
206 Ga0070705_100107853
207 Ga0070705_100198419
208 Ga0070694_100080433
209 Ga0070694_100239883
210 Ga0070706_100046225
211 Ga0070706_100250735
212 Ga0070707_100020453
213 Ga0070698_100025807
214 Ga0070698_100886444
215 Ga0070699_100242484
216 Ga0070679_100138378
217 Ga0070679_101176262
218 Ga0070695_100323299
219 Ga0070695_100401212
220 Ga0070696_100022104
221 Ga0070696_100888394
222 Ga0070693_100395632
223 Ga0070704_100273126
224 Ga0068852_100587990
225 Ga0068859_100288829
226 Ga0068864_100603120
227 Ga0068861_101450529
228 Ga0068860_100768422
229 Ga0081538_10153268
230 Ga0081539_10005653
231 Ga0075433_11072520
232 Ga0075434_100275577
233 Ga0075434_100303313
234 Ga0075434_101058480
235 Ga0075436_100692604
236 Ga0097620_100288820
237 Ga0105250_10506812
238 Ga0105245_10037573
239 Ga0114129_10351993
240 Ga0114129_10747496
241 Ga0105243_10178322
242 Ga0105242_10408009
243 Ga0105239_12716133
244 Ga0105246_10068543
245 Ga0105246_10105570
246 Ga0163162_10453498
247 Ga0163162_11269761
248 Ga0157372_12237577
249 Ga0157376_12151789
250 Ga0207692_10695074
251 Ga0207645_10052481
252 Ga0207684_10482596
253 Ga0207660_10000003
254 Ga0207660_10001691
255 Ga0207660_11050565
256 Ga0207662_10028035
257 Ga0207652_10151457
258 Ga0207646_10033630
259 Ga0207694_11116988
260 Ga0207687_10383846
261 Ga0207700_10956345
262 Ga0207709_10122895
263 Ga0207709_10370465
264 Ga0207704_10145733
265 Ga0207665_10155630
266 Ga0207691_10219299
267 Ga0207689_10253862
268 Ga0207689_10514778
269 Ga0207640_10698121
270 Ga0207674_11282509
271 Ga0207675_100204642
272 Ga0209969_1007470
273 Ga0209981_1019993
274 Ga0209995_1016736
275 Ga0209970_1038495
276 Ga0209971_1007405
277 Ga0209998_10000414
278 Ga0209974_10000763
279 Ga0268265_11625638
280 Ga0268264_10733166
281 Ga0265336_10029724
282 Ga0265338_10879672
283 Ga0307408_101102767
284 Ga0265313_10112552
285 Ga0307405_10289164
286 Ga0307410_10395595
287 Ga0307406_10275506
288 Ga0307407_10528513
289 Ga0307416_100001121
290 Ga0307416_100329752
291 Ga0307415_100015885
292 Ga0307415_100018976
293 Ga0373952_0032401
294 Ga0373943_0194281
295 Ga0373947_0088469
296 Ga0373937_0875094
297 Ga0395899_0279289
298 Ga0395900_0237410
299 Ga0395898_1233554
300 Ga0395898_1562688
301 Ga0451798_0451218
302 Ga0451807_1216422
303 Ga0451853_0125386
304 Ga0439463_125679
305 Ga0450920_003227
306 Ga0450920_068502
307 Ga0450904_012477
308 Ga0450910_000682
309 Ga0451577_0008034
310 Ga0466965_0185342
311 Ga0466965_0780533
312 Ga0453684_0182203
313 Ga0466971_0128189
314 Ga0466970_0344835
315 Ga0466970_0462149
316 Ga0466957_0150802
317 Ga0466957_1251572
318 Ga0466960_0294699
319 Ga0466960_0396058
320 Ga0466959_0006226
321 Ga0466967_0434336
322 Ga0466967_1085827
323 Ga0466967_1882468
324 Ga0495607_0442541
325 Ga0495608_0528562
326 Ga0495643_0391371
327 Ga0495640_0696330
328 Ga0495667_0308773
329 Ga0495658_0365286
330 Ga0495680_0302705
331 Ga0496100_0117833
332 Ga0496101_0036169
333 Ga0496102_0002886
334 Ga0496102_0378033
335 Ga0496102_1056415
336 Ga0496103_0019250
337 Ga0496106_0870751
338 Ga0496107_0521363
339 Ga0496112_0697412
340 Ga0496113_0263493
341 Ga0496114_0009444
342 Ga0501031_0170940
343 Ga0501034_0846088
344 Ga0501039_0249384
345 Ga0501040_0126592
346 Ga0501041_0260251
347 Ga0501041_0282300
348 Ga0501046_0559203
349 Ga0501067_0007514
350 Ga0501067_0087518
351 Ga0501067_0305136
352 Ga0501068_0363925
353 Ga0501069_0002272
354 Ga0501069_0009187
355 Ga0501069_0246327
356 Ga0501069_0944192
357 Ga0501070_0160990
358 Ga0501070_0427655
359 Ga0501071_0486192
360 Ga0501075_0028583
361 Ga0501076_0416040
362 Ga0501080_0306779
363 Ga0501081_0090259
364 Ga0501035_1022589
365 nmdc:mga05p37_113903_c1
366 nmdc:mga05p37_1525859_c1
367 nmdc:mga0a205_1206602_c1
368 nmdc:mga0a205_68054_c1
369 Ga0495655_0014696
370 Ga0501084_0040505
371 Ga0590071_031434
372 Ga0590074_006344
373 Ga0590077_030571
374 Ga0501082_0255883
375 Ga0466962_0586884
376 Ga0530510_0012402
377 Ga0530510_0037472
378 Ga0530510_0777835

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

34

98

0.97

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

21

62

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7r3w-assembly4.cif.gz_D crystal structure of the albicidin resistance protein stm3175 from salmonella typhimurium 0.9203 5 86
7r3w-assembly3.cif.gz_C crystal structure of the albicidin resistance protein stm3175 from salmonella typhimurium 0.9131 5 88
3oio-assembly1.cif.gz_A crystal structure of transcriptional regulator (arac-type dna-binding domain-containing proteins) from chromobacterium violaceum 0.8788 10 86
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.8759 12 86
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.8655 11 88
ID Description Score Start End Superfamily
af_P0A9E0_176_235_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.907 10 66 1.10.10.60
af_P31449_179_288_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8927 8 88 1.10.10.60
af_P96245_143_250_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8764 10 86 1.10.10.60
3w6vA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8655 11 88 1.10.10.60
af_P0A9E0_176_235_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.853 10 66 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A1M5JSM5-F1-model_v4 AraC-type DNA-binding protein 0.9828 1 86 GO:0003700
GO:0043565
AF-H0R360-F1-model_v4 Putative AraC family transcriptional regulator 0.9773 7 88 GO:0003700
GO:0043565
AF-A0A535Y750-F1-model_v4 Helix-turn-helix transcriptional regulator 0.9751 1 88 GO:0003700
GO:0043565
AF-A0A3M4C956-F1-model_v4 deleted 0.9638 4 88
AF-A0A6G3V3A0-F1-model_v4 deleted 0.9618 1 86

Map