F289703
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 188 | 162 | 151 | 676 |
Family's Representative Sequence
| Representative Sequence | 3300039062|Ga0400483_220612|Ga0400483_220612_1520_3730 |
| Length | 736 |
| Sequence | MQATIGRPTLSTPSKIIKRDGSQADFDAAKIHQAILLAAEASGEFTEQEATLITAQVVKVLTHTGYRQEMPGIERIQDVVEQVLISANHLRTARAYIVYREQHNKLRQDRRTLLDVSSSVNEYLQRSDWRVSANANQGYSLGGLILNISGKMIANYWLSHVYPPEIGKAHRNGALHIHDLDMLAGYCAGWSLRTLLHEGLNGTPGKVESSPPKHLSSAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFIRHDKLSYQQVKQAIQELIYNLNVPSRWGTQTPFTNLTFDWVCPEDLRQQVPLIGGIEMPFSYGELQAEMDMINRAYIEVMTEGDAKGRVFTFPIPTYNIGADFPWESDNARRLFGMTAKYGLPYFQNFINSELNPNQVRSMCCRLQLDLRELLKRGNGLFGSAEQTGSIGVVTLNCARLGHLHQQQEADLLSATNQLLQLARNSLEIKRKVIQRHMDAGLFPYTKRYLGTLRNHFSTIGVNGINEMIRNFSGDRWDIADPQGKALAERFLEQIRQQMVRFQEQTGHLYNLEATPAEGATYRFAKLDRQQYPGILQAGTSQSPYYTNSSQLPVGHTDDPFSALQHQESLQCKYTGGTVLHLYMNERISSTQACKNLIKRSLQKFRLPYLTITPTFSICPIHGYLSGEHEFCPQCDQLLHEQSSNSMKQIELKDEQRTRCEVWTRVMGYHRPISAFNPGKRAEQAERVCYEEPKSPNYSIRSADQALG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2513020052 | Flavobacterium sp. CF136 | Isolate | Rhizosphere |
| 2 | 2596583598 | Ralstonia sp. UNCCL144 | Isolate | Unclassified |
| 3 | 2599185178 | Ralstonia sp. NFACC01 | Isolate | Rhizoplane |
| 4 | 2599185292 | Achromobacter sp. NFACC18-2 | Isolate | Rhizoplane |
| 5 | 2643221569 | Achromobacter sp. Root565 | Isolate | Unclassified |
| 6 | 2643221594 | Achromobacter sp. Root170 | Isolate | Unclassified |
| 7 | 2643221600 | Flavobacterium sp. Root186 | Isolate | Unclassified |
| 8 | 2643221621 | Achromobacter sp. Root83 | Isolate | Unclassified |
| 9 | 2643221645 | Massilia sp. Root351 | Isolate | Unclassified |
| 10 | 2643221664 | Massilia sp. Root418 | Isolate | Unclassified |
| 11 | 2643221690 | Cellulomonas sp. Root485 | Isolate | Unclassified |
| 12 | 2721755763 | Pandoraea thiooxydans ATSB16 | Isolate | Rhizosphere |
| 13 | 2739367655 | Pusillimonas sp. YR330 | Isolate | Unclassified |
| 14 | 2808606395 | Achromobacter sp. SLBN-14 | Isolate | Unclassified |
| 15 | 2816332280 | Flavobacterium johnsoniae GSE09 | Isolate | Unclassified |
| 16 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 17 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 18 | 2823421272 | Pseudomonas mendocina S5.2 | Isolate | Rhizoplane |
| 19 | 2848551377 | Brachybacterium saurashtrense DSM 23186 | Isolate | Unclassified |
| 20 | 2857564685 | Duganella sp. R-74599 | Isolate | Unclassified |
| 21 | 2858950400 | Achromobacter sp. K91 | Isolate | Unclassified |
| 22 | 2881359912 | Flavobacterium ustbae T13 | Isolate | Rhizosphere |
| 23 | 2884994152 | Cellulomonas sp. H30R-01 | Isolate | Rhizosphere |
| 24 | 2885266251 | Ralstonia sp. SET104 | Isolate | Nodule |
| 25 | 2903895155 | Flavobacterium sp. HBTb2-11-1 | Isolate | Rhizosphere |
| 26 | 2904419702 | Flavobacterium sp. 1355 | Isolate | Rhizosphere |
| 27 | 2904424332 | Duganella sp. 1411 | Isolate | Rhizosphere |
| 28 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 29 | 2919683626 | Flavobacterium piscis 4129 | Isolate | Unclassified |
| 30 | 2935390628 | Streptomyces sp. PvR034 | Isolate | Rhizosphere |
| 31 | 2939651529 | Pseudomonas sp. 2835 | Isolate | Rhizosphere |
| 32 | 2941479691 | |||
| 33 | 2958458903 | Flavobacterium anhuiense RCM74 | Isolate | Rhizosphere |
| 34 | 3300001915 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 | Metagenome | Rhizosphere |
| 35 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 36 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 37 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 38 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 39 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 40 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 41 | 3300003752 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 | Metagenome | Endosphere |
| 42 | 3300003758 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 | Metagenome | Endosphere |
| 43 | 3300003759 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 | Metagenome | Endosphere |
| 44 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 45 | 3300003763 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 | Metagenome | Endosphere |
| 46 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 47 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 48 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 49 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 50 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 51 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 52 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 53 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 54 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 55 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 56 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 57 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 58 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 59 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 60 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 61 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 62 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 63 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 64 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 65 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 67 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 68 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 70 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 71 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 72 | 3300015684 | Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 | Metagenome | Unclassified |
| 73 | 3300020610 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 74 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 75 | 3300025224 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 77 | 3300025226 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 78 | 3300025228 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 79 | 3300025229 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 80 | 3300025230 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 81 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 82 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 83 | 3300025253 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 84 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 85 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 86 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 87 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 88 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300027665 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 101 | 3300027682 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 102 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 103 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 104 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 105 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 106 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 107 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 108 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 109 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 110 | 3300035121 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 | Metagenome | Rhizosphere |
| 111 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 112 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 113 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 114 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 115 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 116 | 3300038727 | Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 | Metagenome | Unclassified |
| 117 | 3300038735 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 | Metagenome | Unclassified |
| 118 | 3300038741 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 | Metagenome | Unclassified |
| 119 | 3300038742 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 | Metagenome | Unclassified |
| 120 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 121 | 3300039110 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 | Metagenome | Unclassified |
| 122 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 123 | 3300042139 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 | Metagenome | Rhizosphere |
| 124 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 125 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 126 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 132 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 133 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 134 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 135 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 136 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 137 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 138 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 139 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 140 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 141 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 142 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 143 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 144 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 145 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 146 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 147 | 3300049671 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought | Metagenome | Rhizosphere |
| 148 | 3300049679 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought | Metagenome | Rhizosphere |
| 149 | 3300049763 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control | Metagenome | Rhizosphere |
| 150 | 3300049766 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought | Metagenome | Rhizosphere |
| 151 | 3300049776 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought | Metagenome | Rhizosphere |
| 152 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 153 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 154 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 155 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 156 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 157 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 158 | 646564506 | Arcobacter nitrofigilis DSM 7299 | Isolate | Unclassified |
| 159 | 8055419101 | Flavobacterium tyrosinilyticum KCTC 42726 | Isolate | Rhizosphere |
| 160 | 8055592153 | Flavobacterium panacis DCY106 | Isolate | Rhizosphere |
| 161 | 8056131705 | Pseudomonas asgharzadehiana SWRI132 | Isolate | Rhizosphere |
| 162 | 8057798959 | Pseudomonas piscis BW16M1 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 78.72 |
| Metatranscriptomes | 1.06 |
| Isolates | 20.21 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 11.7 |
| Nodule | 0.53 |
| Rhizoplane | 1.6 |
| Rhizosphere | 57.45 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 28.72 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24741J21665_1000456 | 3300001915 | Bacteria | 12393 |
| 2 | JGI25154J39366_1001032 | 3300002738 | Bacteria | 11148 |
| 3 | JGI25151J46595_10004153 | 3300003187 | Bacteria | 7733 |
| 4 | rootH2_10104914 | 3300003320 | Bacteria | 4595 |
| 5 | rootL2_10011816 | 3300003322 | Bacteria | 19645 |
| 6 | rootL2_10034953 | 3300003322 | Bacteria | 6373 |
| 7 | rootH1_10047699 | 3300003323 | Bacteria | 9127 |
| 8 | rootH1_10048820 | 3300003316 | Bacteria | 3376 |
| 9 | rootH1_10048820 | 3300003323 | Bacteria | 6473 |
| 10 | Ga0006562J51391_1014923 | 3300003578 | Bacteria | 3524 |
| 11 | Ga0055539_1000095 | 3300003752 | Bacteria | 102639 |
| 12 | Ga0055532_1000058 | 3300003758 | Bacteria | 153303 |
| 13 | Ga0055525_1000859 | 3300003759 | Bacteria | 8889 |
| 14 | Ga0055535_1000041 | 3300003761 | Bacteria | 153303 |
| 15 | Ga0055529_1000077 | 3300003763 | Bacteria | 153303 |
| 16 | Ga0055526_1000001 | 3300003771 | Bacteria | 669703 |
| 17 | Ga0065714_10003541 | 3300005288 | Bacteria | 8636 |
| 18 | Ga0065714_10069477 | 3300005288 | Bacteria | 4212 |
| 19 | Ga0065714_10074033 | 3300005288 | Bacteria | 3093 |
| 20 | Ga0065715_10108718 | 3300005293 | Bacteria | 2704 |
| 21 | Ga0070658_10000448 | 3300005327 | Bacteria | 35674 |
| 22 | Ga0070670_100002000 | 3300005331 | Bacteria | 16667 |
| 23 | Ga0070661_100000085 | 3300005344 | Bacteria | 74949 |
| 24 | Ga0070659_100008940 | 3300005366 | Bacteria | 7343 |
| 25 | Ga0070714_100062447 | 3300005435 | Bacteria | 3202 |
| 26 | Ga0070663_100000028 | 3300005455 | Bacteria | 82427 |
| 27 | Ga0068855_100108265 | 3300005563 | Bacteria | 3192 |
| 28 | Ga0070664_100000059 | 3300005564 | Bacteria | 67762 |
| 29 | Ga0068857_100006969 | 3300005577 | Bacteria | 9726 |
| 30 | Ga0068854_100000067 | 3300005578 | Bacteria | 75943 |
| 31 | Ga0068856_100000939 | 3300005614 | Bacteria | 31221 |
| 32 | Ga0068862_100071404 | 3300005844 | Bacteria | 2998 |
| 33 | Ga0075428_100108188 | 3300006844 | Bacteria | 3030 |
| 34 | Ga0105244_10004730 | 3300009036 | Bacteria | 9265 |
| 35 | Ga0105239_10170338 | 3300010375 | Bacteria | 2435 |
| 36 | Ga0157371_10000082 | 3300013102 | Bacteria | 149981 |
| 37 | Ga0157370_10000089 | 3300013104 | Bacteria | 103347 |
| 38 | Ga0157370_10000465 | 3300013104 | Bacteria | 50538 |
| 39 | Ga0157370_10067071 | 3300013104 | Bacteria | 3392 |
| 40 | Ga0157370_10089722 | 3300013104 | Bacteria | 2887 |
| 41 | Ga0157369_10002673 | 3300013105 | Bacteria | 21259 |
| 42 | Ga0157369_10004935 | 3300013105 | Bacteria | 15629 |
| 43 | Ga0157369_10104828 | 3300013105 | Bacteria | 3011 |
| 44 | Ga0157374_10000065 | 3300013296 | Bacteria | 108630 |
| 45 | Ga0157372_10000122 | 3300013307 | Bacteria | 83503 |
| 46 | Ga0182006_1009859 | 3300015261 | Bacteria | 4271 |
| 47 | Ga0182007_10012108 | 3300015262 | Bacteria | 3330 |
| 48 | Ga0182005_1000203 | 3300015265 | Bacteria | 40192 |
| 49 | Ga0183365_10008 | 3300015684 | Bacteria | 74681 |
| 50 | Ga0154015_1446288 | 3300020610 | Bacteria | 24389 |
| 51 | Ga0213872_10012442 | 3300021361 | Bacteria | 4002 |
| 52 | Ga0209784_100560 | 3300025224 | Bacteria | 13068 |
| 53 | Ga0209566_100002 | 3300025225 | Bacteria | 2614868 |
| 54 | Ga0209674_100554 | 3300025226 | Bacteria | 14868 |
| 55 | Ga0209672_100122 | 3300025228 | Bacteria | 81984 |
| 56 | Ga0209147_100002 | 3300025229 | Bacteria | 2158988 |
| 57 | Ga0209563_100780 | 3300025230 | Bacteria | 9632 |
| 58 | Ga0209258_100002 | 3300025242 | Bacteria | 2158988 |
| 59 | Ga0209646_1000023 | 3300025246 | Bacteria | 441100 |
| 60 | Ga0209677_100208 | 3300025253 | Bacteria | 45576 |
| 61 | Ga0209455_1000009 | 3300025272 | Bacteria | 1042273 |
| 62 | Ga0209025_1000151 | 3300025294 | Bacteria | 172081 |
| 63 | Ga0209564_1000002 | 3300025295 | Bacteria | 1636803 |
| 64 | Ga0209051_1000697 | 3300025303 | Bacteria | 36989 |
| 65 | Ga0207655_1010673 | 3300025728 | Bacteria | 5552 |
| 66 | Ga0207647_10072503 | 3300025904 | Bacteria | 2076 |
| 67 | Ga0207705_10000001 | 3300025909 | Bacteria | 2061880 |
| 68 | Ga0207695_10003546 | 3300025913 | Bacteria | 21865 |
| 69 | Ga0207649_10000155 | 3300025920 | Bacteria | 56152 |
| 70 | Ga0207650_10000202 | 3300025925 | Bacteria | 68952 |
| 71 | Ga0207690_10012021 | 3300025932 | Bacteria | 5176 |
| 72 | Ga0207679_10000028 | 3300025945 | Bacteria | 187787 |
| 73 | Ga0207640_10000410 | 3300025981 | Bacteria | 27128 |
| 74 | Ga0207678_10000150 | 3300026067 | Bacteria | 57057 |
| 75 | Ga0207678_10017644 | 3300026067 | Bacteria | 6266 |
| 76 | Ga0207702_10000330 | 3300026078 | Bacteria | 54227 |
| 77 | Ga0207674_10033651 | 3300026116 | Bacteria | 5364 |
| 78 | Ga0209983_1001407 | 3300027665 | Bacteria | 5368 |
| 79 | Ga0209971_1000943 | 3300027682 | Bacteria | 7489 |
| 80 | Ga0307408_100003060 | 3300031548 | Bacteria | 11539 |
| 81 | Ga0316579_10037868 | 3300031691 | Bacteria | 2229 |
| 82 | Ga0265314_10073403 | 3300031711 | Bacteria | 2281 |
| 83 | Ga0307410_10000081 | 3300031852 | Bacteria | 32847 |
| 84 | Ga0307406_10000047 | 3300031901 | Bacteria | 69025 |
| 85 | Ga0307416_100043569 | 3300032002 | Bacteria | 3515 |
| 86 | Ga0307414_10000002 | 3300032004 | Bacteria | 623006 |
| 87 | Ga0307411_10000001 | 3300032005 | Bacteria | 931810 |
| 88 | Ga0373960_0006057 | 3300035121 | Bacteria | 2823 |
| 89 | Ga0395900_0017938 | 3300037418 | Bacteria | 7224 |
| 90 | Ga0395905_0000881 | 3300037471 | Bacteria | 39139 |
| 91 | Ga0395905_0008236 | 3300037471 | Bacteria | 10294 |
| 92 | Ga0395901_0000410 | 3300038443 | Bacteria | 50670 |
| 93 | Ga0400484_01744 | 3300038725 | Bacteria | 12567 |
| 94 | Ga0400490_07897 | 3300038726 | Bacteria | 57227 |
| 95 | Ga0400490_34783 | 3300038726 | Bacteria | 33554 |
| 96 | Ga0400491_14201 | 3300038727 | Bacteria | 4477 |
| 97 | Ga0400485_13971 | 3300038735 | Bacteria | 16446 |
| 98 | Ga0400485_14976 | 3300038735 | Bacteria | 60661 |
| 99 | Ga0400488_00890 | 3300038741 | Bacteria | 9728 |
| 100 | Ga0400488_47416 | 3300038741 | Bacteria | 14485 |
| 101 | Ga0400488_54628 | 3300038741 | Bacteria | 4101 |
| 102 | Ga0400486_03471 | 3300038742 | Bacteria | 77173 |
| 103 | Ga0400486_22650 | 3300038742 | Bacteria | 17230 |
| 104 | Ga0400486_23852 | 3300038742 | Bacteria | 15965 |
| 105 | Ga0400483_182361 | 3300039062 | Bacteria | 4613 |
| 106 | Ga0400483_220612 | 3300039062 | Bacteria | 5272 |
| 107 | Ga0400487_23857 | 3300039110 | Bacteria | 4116 |
| 108 | Ga0400487_28963 | 3300039110 | Bacteria | 13146 |
| 109 | Ga0400487_58697 | 3300039110 | Bacteria | 19303 |
| 110 | Ga0400487_66656 | 3300039110 | Bacteria | 22567 |
| 111 | Ga0436361_0705481 | 3300039447 | Bacteria | 13802 |
| 112 | Ga0450904_000248 | 3300042139 | Bacteria | 11756 |
| 113 | Ga0453684_0000096 | 3300044712 | Bacteria | 377923 |
| 114 | Ga0451576_0008259 | 3300045051 | Bacteria | 12241 |
| 115 | Ga0495638_0000086 | 3300046460 | Bacteria | 152781 |
| 116 | Ga0495650_0003062 | 3300046471 | Bacteria | 12585 |
| 117 | Ga0495583_0002546 | 3300046506 | Bacteria | 15401 |
| 118 | Ga0495610_0025990 | 3300046512 | Bacteria | 3132 |
| 119 | Ga0495648_0000001 | 3300046524 | Bacteria | 696872 |
| 120 | Ga0495654_0000038 | 3300046530 | Bacteria | 185693 |
| 121 | Ga0495609_0001554 | 3300046538 | Bacteria | 15028 |
| 122 | Ga0495622_0000094 | 3300046557 | Bacteria | 79405 |
| 123 | Ga0495633_0000096 | 3300046558 | Bacteria | 118933 |
| 124 | Ga0496116_0000030 | 3300048919 | Bacteria | 420761 |
| 125 | Ga0496116_0045469 | 3300048919 | Bacteria | 2971 |
| 126 | Ga0496119_0017566 | 3300048922 | Bacteria | 5375 |
| 127 | Ga0496121_0000574 | 3300048924 | Bacteria | 69107 |
| 128 | Ga0496124_0021194 | 3300048927 | Bacteria | 5991 |
| 129 | Ga0496125_0000035 | 3300048928 | Bacteria | 339737 |
| 130 | Ga0496125_0000116 | 3300048928 | Bacteria | 180492 |
| 131 | Ga0501034_0000129 | 3300049571 | Bacteria | 139927 |
| 132 | Ga0501034_0132076 | 3300049571 | Bacteria | 2479 |
| 133 | Ga0501038_0051130 | 3300049574 | Bacteria | 3568 |
| 134 | Ga0501043_0053831 | 3300049579 | Bacteria | 3160 |
| 135 | Ga0501046_0002301 | 3300049580 | Bacteria | 18005 |
| 136 | Ga0501046_0005635 | 3300049580 | Bacteria | 11178 |
| 137 | Ga0501048_0040663 | 3300049582 | Bacteria | 3331 |
| 138 | Ga0501072_0004640 | 3300049588 | Bacteria | 10460 |
| 139 | Ga0501075_0000592 | 3300049591 | Bacteria | 22113 |
| 140 | Ga0501238_000168 | 3300049671 | Bacteria | 9952 |
| 141 | Ga0501249_000001 | 3300049679 | Bacteria | 268580 |
| 142 | Ga0501249_000098 | 3300049679 | Bacteria | 27433 |
| 143 | Ga0501266_000035 | 3300049763 | Bacteria | 29939 |
| 144 | Ga0501269_000247 | 3300049766 | Bacteria | 15576 |
| 145 | Ga0501280_001731 | 3300049776 | Bacteria | 3854 |
| 146 | Ga0501044_0117223 | 3300049823 | Bacteria | 2667 |
| 147 | nmdc:mga09592_114028_c1 | 3300050508 | Bacteria | 2320 |
| 148 | Ga0500641_0002455 | 3300053096 | Bacteria | 6560 |
| 149 | Ga0500608_000143 | 3300053122 | Bacteria | 29514 |
| 150 | Ga0500618_000069 | 3300053125 | Bacteria | 87204 |
| 151 | Ga0501082_0014883 | 3300060353 | Bacteria | 6700 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | iso_pu_bacteria | 2643221690 | 2644503952 | 557 |
| 2 | 3300049571 | Ga0501034_0132076 | Ga0501034_0132076_172_1980 | 564 |
| 3 | 3300049579 | Ga0501043_0053831 | Ga0501043_0053831_934_2757 | 565 |
| 4 | 3300049580 | Ga0501046_0005635 | Ga0501046_0005635_4568_6391 | 565 |
| 5 | 3300049582 | Ga0501048_0040663 | Ga0501048_0040663_602_2425 | 565 |
| 6 | 3300049823 | Ga0501044_0117223 | Ga0501044_0117223_206_2029 | 565 |
| 7 | 3300060353 | Ga0501082_0014883 | Ga0501082_0014883_3834_5657 | 565 |
| 8 | iso_pu_bacteria | 2884994152 | 2884996619 | 568 |
| 9 | iso_pu_bacteria | 2935390628 | 2935393053 | 571 |
| 10 | 3300013105 | Ga0157369_10104828 | Ga0157369_101048282 | 572 |
| 11 | 3300005327 | Ga0070658_10000448 | Ga0070658_1000044821 | 576 |
| 12 | 3300005563 | Ga0068855_100108265 | Ga0068855_1001082653 | 576 |
| 13 | 3300025904 | Ga0207647_10072503 | Ga0207647_100725032 | 576 |
| 14 | 3300025909 | Ga0207705_10000001 | Ga0207705_10000001580 | 576 |
| 15 | 3300026067 | Ga0207678_10017644 | Ga0207678_100176443 | 576 |
| 16 | iso_pu_bacteria | 2848551377 | 2848553393 | 578 |
| 17 | 3300049574 | Ga0501038_0051130 | Ga0501038_0051130_1412_3274 | 582 |
| 18 | 3300003323 | rootH1_10047699 | rootH1_100476996 | 583 |
| 19 | 3300015684 | Ga0183365_10008 | Ga0183365_1000840 | 586 |
| 20 | 3300053122 | Ga0500608_000143 | Ga0500608_000143_19866_21857 | 586 |
| 21 | 3300013104 | Ga0157370_10089722 | Ga0157370_100897223 | 588 |
| 22 | 3300013296 | Ga0157374_10000065 | Ga0157374_1000006513 | 588 |
| 23 | iso_pu_bacteria | 2739367655 | 2739613534 | 591 |
| 24 | 3300003187 | JGI25151J46595_10004153 | JGI25151J46595_100041536 | 592 |
| 25 | 3300025294 | Ga0209025_1000151 | Ga0209025_100015193 | 592 |
| 26 | 3300049571 | Ga0501034_0000129 | Ga0501034_0000129_80883_82661 | 592 |
| 27 | 3300013104 | Ga0157370_10067071 | Ga0157370_100670712 | 595 |
| 28 | 3300003320 | rootH2_10104914 | rootH2_101049144 | 596 |
| 29 | 3300038443 | Ga0395901_0000410 | Ga0395901_0000410_32262_34061 | 596 |
| 30 | 3300010375 | Ga0105239_10170338 | Ga0105239_101703381 | 622 |
| 31 | 3300032002 | Ga0307416_100043569 | Ga0307416_1000435694 | 631 |
| 32 | 3300013104 | Ga0157370_10000465 | Ga0157370_1000046521 | 638 |
| 33 | 3300003322 | rootL2_10011816 | rootL2_100118164 | 645 |
| 34 | iso_pu_bacteria | 2643221600 | 2644011141 | 645 |
| 35 | iso_pu_bacteria | 2816332280 | 2817416496 | 645 |
| 36 | iso_pu_bacteria | 2821136567 | 2821137730 | 645 |
| 37 | iso_pu_bacteria | 2881359912 | 2881361884 | 645 |
| 38 | iso_pu_bacteria | 2903895155 | 2903897630 | 645 |
| 39 | iso_pu_bacteria | 2904419702 | 2904421284 | 645 |
| 40 | iso_pu_bacteria | 2904467357 | 2904467529 | 645 |
| 41 | iso_pu_bacteria | 2919683626 | 2919687991 | 645 |
| 42 | iso_pu_bacteria | 2958458903 | 2958462319 | 645 |
| 43 | iso_pu_bacteria | 646564506 | 646813862 | 645 |
| 44 | iso_pu_bacteria | 8055419101 | 8055423714 | 645 |
| 45 | iso_pu_bacteria | 8055592153 | 8055592863 | 645 |
| 46 | iso_pu_bacteria | 2513020052 | 2513234480 | 648 |
| 47 | 3300003323 | rootH1_10048820 | rootH1_100488208 | 649 |
| 48 | 3300003578 | Ga0006562J51391_1014923 | Ga0006562J51391_10149233 | 649 |
| 49 | 3300005288 | Ga0065714_10003541 | Ga0065714_100035416 | 649 |
| 50 | 3300005288 | Ga0065714_10069477 | Ga0065714_100694772 | 649 |
| 51 | 3300005288 | Ga0065714_10074033 | Ga0065714_100740333 | 649 |
| 52 | 3300005293 | Ga0065715_10108718 | Ga0065715_101087181 | 649 |
| 53 | 3300013105 | Ga0157369_10002673 | Ga0157369_1000267315 | 649 |
| 54 | 3300015265 | Ga0182005_1000203 | Ga0182005_100020330 | 649 |
| 55 | 3300031548 | Ga0307408_100003060 | Ga0307408_1000030607 | 649 |
| 56 | 3300031852 | Ga0307410_10000081 | Ga0307410_1000008130 | 649 |
| 57 | 3300031901 | Ga0307406_10000047 | Ga0307406_1000004721 | 649 |
| 58 | 3300032004 | Ga0307414_10000002 | Ga0307414_10000002439 | 649 |
| 59 | 3300032005 | Ga0307411_10000001 | Ga0307411_10000001132 | 649 |
| 60 | 3300048919 | Ga0496116_0000030 | Ga0496116_0000030_130171_132294 | 649 |
| 61 | 3300048927 | Ga0496124_0021194 | Ga0496124_0021194_2483_4606 | 649 |
| 62 | 3300048928 | Ga0496125_0000035 | Ga0496125_0000035_290282_292405 | 649 |
| 63 | 3300049671 | Ga0501238_000168 | Ga0501238_000168_7194_9305 | 649 |
| 64 | 3300049679 | Ga0501249_000001 | Ga0501249_000001_71168_73273 | 649 |
| 65 | 3300049679 | Ga0501249_000098 | Ga0501249_000098_442_2547 | 649 |
| 66 | 3300049763 | Ga0501266_000035 | Ga0501266_000035_8400_10505 | 649 |
| 67 | 3300049776 | Ga0501280_001731 | Ga0501280_001731_1030_3141 | 649 |
| 68 | 3300053096 | Ga0500641_0002455 | Ga0500641_0002455_267_2372 | 649 |
| 69 | 3300049588 | Ga0501072_0004640 | Ga0501072_0004640_1125_3191 | 651 |
| 70 | 3300005435 | Ga0070714_100062447 | Ga0070714_1000624472 | 652 |
| 71 | 3300006844 | Ga0075428_100108188 | Ga0075428_1001081882 | 652 |
| 72 | 3300050508 | nmdc:mga09592_114028_c1 | nmdc:mga09592_114028_c1_171_2240 | 652 |
| 73 | iso_pu_bacteria | 2818991442 | 2819574406 | 654 |
| 74 | 3300044712 | Ga0453684_0000096 | Ga0453684_0000096_136078_138165 | 655 |
| 75 | 3300005844 | Ga0068862_100071404 | Ga0068862_1000714042 | 658 |
| 76 | 3300046512 | Ga0495610_0025990 | Ga0495610_0025990_720_2714 | 660 |
| 77 | 3300049580 | Ga0501046_0002301 | Ga0501046_0002301_839_2956 | 660 |
| 78 | 3300049766 | Ga0501269_000247 | Ga0501269_000247_12319_14313 | 660 |
| 79 | iso_pu_bacteria | 2599185292 | 2599903607 | 660 |
| 80 | iso_pu_bacteria | 2643221569 | 2643860097 | 660 |
| 81 | iso_pu_bacteria | 2643221594 | 2643979275 | 660 |
| 82 | iso_pu_bacteria | 2643221621 | 2644125070 | 660 |
| 83 | iso_pu_bacteria | 2643221645 | 2644250316 | 660 |
| 84 | iso_pu_bacteria | 2643221664 | 2644357685 | 660 |
| 85 | iso_pu_bacteria | 2808606395 | 2809035908 | 660 |
| 86 | iso_pu_bacteria | 2858950400 | 2858950485 | 660 |
| 87 | iso_pu_bacteria | 2941479691 | 2941481246 | 660 |
| 88 | iso_pu_bacteria | 8056131705 | 8056135121 | 660 |
| 89 | 3300035121 | Ga0373960_0006057 | Ga0373960_0006057_582_2576 | 661 |
| 90 | 3300038735 | Ga0400485_14976 | Ga0400485_14976_40930_43083 | 661 |
| 91 | 3300038741 | Ga0400488_54628 | Ga0400488_54628_427_2580 | 661 |
| 92 | 3300038742 | Ga0400486_03471 | Ga0400486_03471_40927_43080 | 661 |
| 93 | 3300039110 | Ga0400487_28963 | Ga0400487_28963_3441_5594 | 661 |
| 94 | 3300039110 | Ga0400487_66656 | Ga0400487_66656_9167_11341 | 661 |
| 95 | 3300049591 | Ga0501075_0000592 | Ga0501075_0000592_12817_14934 | 661 |
| 96 | 3300027665 | Ga0209983_1001407 | Ga0209983_10014073 | 662 |
| 97 | 3300027682 | Ga0209971_1000943 | Ga0209971_10009437 | 662 |
| 98 | 3300005331 | Ga0070670_100002000 | Ga0070670_1000020002 | 663 |
| 99 | 3300025925 | Ga0207650_10000202 | Ga0207650_1000020221 | 663 |
| 100 | 3300048919 | Ga0496116_0045469 | Ga0496116_0045469_14_2008 | 664 |
| 101 | 3300048922 | Ga0496119_0017566 | Ga0496119_0017566_2197_4191 | 664 |
| 102 | 3300048924 | Ga0496121_0000574 | Ga0496121_0000574_8359_10353 | 664 |
| 103 | 3300048928 | Ga0496125_0000116 | Ga0496125_0000116_114075_116069 | 664 |
| 104 | iso_pu_bacteria | 2939651529 | 2939656847 | 664 |
| 105 | iso_pu_bacteria | 8057798959 | 8057800193 | 664 |
| 106 | 3300002738 | JGI25154J39366_1001032 | JGI25154J39366_10010327 | 665 |
| 107 | 3300003771 | Ga0055526_1000001 | Ga0055526_1000001497 | 665 |
| 108 | 3300021361 | Ga0213872_10012442 | Ga0213872_100124422 | 665 |
| 109 | 3300025246 | Ga0209646_1000023 | Ga0209646_1000023112 | 665 |
| 110 | 3300025295 | Ga0209564_1000002 | Ga0209564_100000270 | 665 |
| 111 | 3300031711 | Ga0265314_10073403 | Ga0265314_100734031 | 665 |
| 112 | 3300039447 | Ga0436361_0705481 | Ga0436361_0705481_4290_6296 | 665 |
| 113 | 3300046460 | Ga0495638_0000086 | Ga0495638_0000086_82694_84703 | 665 |
| 114 | 3300046471 | Ga0495650_0003062 | Ga0495650_0003062_4224_6233 | 665 |
| 115 | 3300046506 | Ga0495583_0002546 | Ga0495583_0002546_7237_9246 | 665 |
| 116 | 3300046524 | Ga0495648_0000001 | Ga0495648_0000001_283406_285415 | 665 |
| 117 | 3300046538 | Ga0495609_0001554 | Ga0495609_0001554_5842_7851 | 665 |
| 118 | 3300046557 | Ga0495622_0000094 | Ga0495622_0000094_9405_11414 | 665 |
| 119 | 3300046558 | Ga0495633_0000096 | Ga0495633_0000096_15064_17073 | 665 |
| 120 | 3300025303 | Ga0209051_1000697 | Ga0209051_100069718 | 666 |
| 121 | 3300037471 | Ga0395905_0000881 | Ga0395905_0000881_35152_37173 | 666 |
| 122 | 3300045051 | Ga0451576_0008259 | Ga0451576_0008259_8230_10263 | 666 |
| 123 | iso_pu_bacteria | 2823421272 | 2823423771 | 666 |
| 124 | 3300009036 | Ga0105244_10004730 | Ga0105244_100047306 | 667 |
| 125 | 3300025728 | Ga0207655_1010673 | Ga0207655_10106733 | 667 |
| 126 | 3300037471 | Ga0395905_0008236 | Ga0395905_0008236_4117_6150 | 667 |
| 127 | 3300042139 | Ga0450904_000248 | Ga0450904_000248_6245_8260 | 667 |
| 128 | iso_pu_bacteria | 2721755763 | 2723879432 | 667 |
| 129 | 3300039062 | Ga0400483_182361 | Ga0400483_182361_750_2786 | 668 |
| 130 | iso_pu_bacteria | 2904424332 | 2904425159 | 669 |
| 131 | 3300038725 | Ga0400484_01744 | Ga0400484_01744_10280_12328 | 671 |
| 132 | 3300038726 | Ga0400490_07897 | Ga0400490_07897_17092_19137 | 671 |
| 133 | 3300038735 | Ga0400485_13971 | Ga0400485_13971_6405_8450 | 671 |
| 134 | 3300038741 | Ga0400488_00890 | Ga0400488_00890_3622_5667 | 671 |
| 135 | 3300038741 | Ga0400488_47416 | Ga0400488_47416_9810_11855 | 671 |
| 136 | 3300038742 | Ga0400486_22650 | Ga0400486_22650_9017_11062 | 671 |
| 137 | 3300038742 | Ga0400486_23852 | Ga0400486_23852_7493_9538 | 671 |
| 138 | 3300039110 | Ga0400487_23857 | Ga0400487_23857_713_2758 | 671 |
| 139 | 3300039110 | Ga0400487_58697 | Ga0400487_58697_6547_8592 | 671 |
| 140 | iso_pu_bacteria | 2857564685 | 2857567088 | 671 |
| 141 | 3300031691 | Ga0316579_10037868 | Ga0316579_100378681 | 673 |
| 142 | 3300038726 | Ga0400490_34783 | Ga0400490_34783_25187_27238 | 673 |
| 143 | 3300038727 | Ga0400491_14201 | Ga0400491_14201_1981_4032 | 673 |
| 144 | 3300003322 | rootL2_10034953 | rootL2_100349536 | 674 |
| 145 | 3300046530 | Ga0495654_0000038 | Ga0495654_0000038_32351_34390 | 675 |
| 146 | 3300053125 | Ga0500618_000069 | Ga0500618_000069_33683_35722 | 675 |
| 147 | iso_pu_bacteria | 2596583598 | 2597032233 | 683 |
| 148 | iso_pu_bacteria | 2599185178 | 2599443984 | 683 |
| 149 | iso_pu_bacteria | 2885266251 | 2885269931 | 683 |
| 150 | 3300001915 | JGI24741J21665_1000456 | JGI24741J21665_100045612 | 687 |
| 151 | 3300003752 | Ga0055539_1000095 | Ga0055539_1000095110 | 687 |
| 152 | 3300003758 | Ga0055532_1000058 | Ga0055532_1000058159 | 687 |
| 153 | 3300003759 | Ga0055525_1000859 | Ga0055525_10008599 | 687 |
| 154 | 3300003761 | Ga0055535_1000041 | Ga0055535_1000041159 | 687 |
| 155 | 3300003763 | Ga0055529_1000077 | Ga0055529_10000773 | 687 |
| 156 | 3300005344 | Ga0070661_100000085 | Ga0070661_10000008524 | 687 |
| 157 | 3300005366 | Ga0070659_100008940 | Ga0070659_1000089408 | 687 |
| 158 | 3300005455 | Ga0070663_100000028 | Ga0070663_10000002848 | 687 |
| 159 | 3300005564 | Ga0070664_100000059 | Ga0070664_10000005923 | 687 |
| 160 | 3300005577 | Ga0068857_100006969 | Ga0068857_10000696910 | 687 |
| 161 | 3300005578 | Ga0068854_100000067 | Ga0068854_10000006718 | 687 |
| 162 | 3300005614 | Ga0068856_100000939 | Ga0068856_10000093927 | 687 |
| 163 | 3300013102 | Ga0157371_10000082 | Ga0157371_10000082145 | 687 |
| 164 | 3300013104 | Ga0157370_10000089 | Ga0157370_1000008952 | 687 |
| 165 | 3300013105 | Ga0157369_10004935 | Ga0157369_1000493515 | 687 |
| 166 | 3300013307 | Ga0157372_10000122 | Ga0157372_100001228 | 687 |
| 167 | 3300015261 | Ga0182006_1009859 | Ga0182006_10098592 | 687 |
| 168 | 3300015262 | Ga0182007_10012108 | Ga0182007_100121081 | 687 |
| 169 | 3300020610 | Ga0154015_1446288 | Ga0154015_144628817 | 687 |
| 170 | 3300025224 | Ga0209784_100560 | Ga0209784_10056012 | 687 |
| 171 | 3300025225 | Ga0209566_100002 | Ga0209566_1000022353 | 687 |
| 172 | 3300025226 | Ga0209674_100554 | Ga0209674_1005543 | 687 |
| 173 | 3300025228 | Ga0209672_100122 | Ga0209672_1001223 | 687 |
| 174 | 3300025229 | Ga0209147_100002 | Ga0209147_100002932 | 687 |
| 175 | 3300025230 | Ga0209563_100780 | Ga0209563_10078010 | 687 |
| 176 | 3300025242 | Ga0209258_100002 | Ga0209258_100002932 | 687 |
| 177 | 3300025253 | Ga0209677_100208 | Ga0209677_1002083 | 687 |
| 178 | 3300025272 | Ga0209455_1000009 | Ga0209455_1000009814 | 687 |
| 179 | 3300025913 | Ga0207695_10003546 | Ga0207695_1000354612 | 687 |
| 180 | 3300025920 | Ga0207649_10000155 | Ga0207649_1000015547 | 687 |
| 181 | 3300025932 | Ga0207690_10012021 | Ga0207690_100120214 | 687 |
| 182 | 3300025945 | Ga0207679_10000028 | Ga0207679_10000028144 | 687 |
| 183 | 3300025981 | Ga0207640_10000410 | Ga0207640_1000041011 | 687 |
| 184 | 3300026067 | Ga0207678_10000150 | Ga0207678_1000015047 | 687 |
| 185 | 3300026078 | Ga0207702_10000330 | Ga0207702_100003303 | 687 |
| 186 | 3300026116 | Ga0207674_10033651 | Ga0207674_100336515 | 687 |
| 187 | 3300037418 | Ga0395900_0017938 | Ga0395900_0017938_4366_6441 | 687 |
| 188 | 3300039062 | Ga0400483_220612 | Ga0400483_220612_1520_3730 | 687 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8p2s-assembly1.cif.gz_A | cryo-em structure of the anaerobic ribonucleotide reductase from prevotella copri in its dimeric, atp/dttp/gtp-bound state | 0.7918 | 129 | 631 |
| 8p27-assembly1.cif.gz_B | cryo-em structure of the anaerobic ribonucleotide reductase from prevotella copri in its dimeric, datp-bound state | 0.7892 | 129 | 631 |
| 8p39-assembly1.cif.gz_A | cryo-em structure of the anaerobic ribonucleotide reductase from prevotella copri in its dimeric, dgtp/atp-bound state | 0.7842 | 129 | 633 |
| 8p27-assembly1.cif.gz_A | cryo-em structure of the anaerobic ribonucleotide reductase from prevotella copri in its dimeric, datp-bound state | 0.7817 | 129 | 631 |
| 8p39-assembly1.cif.gz_B | cryo-em structure of the anaerobic ribonucleotide reductase from prevotella copri in its dimeric, dgtp/atp-bound state | 0.7682 | 104 | 653 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WH77_21_107_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9586 | 9 | 94 | 1.10.10.10 |
| af_P28903_3_90_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9283 | 9 | 94 | 1.10.10.10 |
| af_P9WH77_21_107_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9269 | 9 | 94 | 1.10.10.10 |
| af_P28903_3_90_1.10.10.10 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.8988 | 9 | 94 | 1.10.10.10 |
| af_Q58242_668_1058_3.20.70.20 | Alpha Beta;Alpha-Beta Barrel;Anaerobic Ribonucleotide-triphosphate Reductase Large Chain; | 0.7949 | 273 | 536 | 3.20.70.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A164NCH3-F1-model_v4 | Anaerobic ribonucleoside-triphosphate reductase | 0.9743 | 6 | 100 |
GO:0004748
GO:0005524 GO:0008998 GO:0009265 GO:0031250 |
| AF-A0A352SDB5-F1-model_v4 | Ribonucleoside triphosphate reductase (EC 1.17.4.2) | 0.9729 | 221 | 378 |
GO:0004748
GO:0006260 GO:0008998 GO:0009265 GO:0031250 |
| AF-A0A349L3C0-F1-model_v4 | Ribonucleoside triphosphate reductase (EC 1.17.4.2) | 0.9705 | 147 | 370 |
GO:0004748
GO:0006260 GO:0008998 GO:0009265 GO:0031250 |
| AF-A0A349L3C0-F1-model_v4 | Ribonucleoside triphosphate reductase (EC 1.17.4.2) | 0.9621 | 147 | 370 |
GO:0004748
GO:0006260 GO:0008998 GO:0009265 GO:0031250 |
| AF-A0A258B783-F1-model_v4 | Uncharacterized protein | 0.96 | 417 | 653 |
GO:0004748
GO:0006260 GO:0008998 GO:0009265 GO:0031250 |
Predicted Structure (AlphaFold2)
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