F272852

General Info

Members Datasets Scaffolds Average Seq Length
178 149 356 337

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0146836|Ga0500616_0146836_81_1001
Length 306
Sequence MARAGEIAALRHLGLSLAQIARVLKGDRQALEPALTAHQAVLQRQLHHLAGTIEKVSAMRTNIAAGRTPDAGELAQLIRPAPTVRIAFDLPWPWGGEEFALSDIRALNYIIGPLGSGKTRLALAIAKALPNAAFIGLDRSADNAMARMEADPALKRRVDGIVAWLVEDGATASQALIALLVAMESSTAAMLVVDMVEQGLDQASQEALSAYFKRRGPDTKPLFLMTRSSAILDLAAVGSDETIIFCPANHSPPICVAPYPGAPGYEAVATCLASLVVRARTEGVIAWRPQKQSDHLAGVHDASGIE

Samples

Sample ID Description Type Environment
1 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
17 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
37 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
38 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
39 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
54 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
55 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
56 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
60 3300030763 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300033544 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 Metagenome Unclassified
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
69 3300036534 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
75 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
76 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
77 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
78 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
81 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
82 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
83 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
84 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
85 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
86 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
87 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
88 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
89 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
90 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
91 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
94 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
99 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
108 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
109 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
110 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
115 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
116 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
117 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
118 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
119 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
120 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
121 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
122 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
123 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
124 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
125 2508501127 Mesorhizobium sp. WSM2561 Isolate Nodule
126 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
127 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
128 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
129 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
130 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
131 2643221583 Caulobacter sp. Root655 Isolate Unclassified
132 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
133 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
134 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
135 2818991435 Caulobacter henricii 536 Isolate Unclassified
136 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
137 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
138 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
139 2869162929 Mesorhizobium sanjuanii BSA136 Isolate Nodule
140 2885312484 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Isolate Nodule
141 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
142 2906610324
143 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
144 2922425934
145 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
146 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
147 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
148 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
149 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.23
Metatranscriptomes 1.7
Isolates 13.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.29
Nodule 8.43
Rhizoplane 10.11
Rhizosphere 44.38
Stem 0
Stem Tuber 0
Unclassified 0.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500616_0146836 3300053153 Bacteria 1096
2 JGI25153J46596_10027886 3300003215 Bacteria 1970
3 Ga0055531_10002419 3300003794 Bacteria 12501
4 Ga0065165_1002009 3300005262 Bacteria 19012
5 Ga0070670_100104841 3300005331 Bacteria 2436
6 Ga0068868_100099359 3300005338 Bacteria 2354
7 Ga0070671_100008911 3300005355 Bacteria 8049
8 Ga0070713_100025205 3300005436 Bacteria 4646
9 Ga0070681_10215927 3300005458 Bacteria 1834
10 Ga0070684_100161791 3300005535 Bacteria 2031
11 Ga0070697_100070538 3300005536 Bacteria 2865
12 Ga0068853_100015938 3300005539 Bacteria 6178
13 Ga0068855_100029850 3300005563 Bacteria 6520
14 Ga0068852_100165449 3300005616 Bacteria 2069
15 Ga0068864_100029594 3300005618 Bacteria 4640
16 Ga0070717_10011306 3300006028 Bacteria 6774
17 Ga0075369_10022827 3300006186 Bacteria 2584
18 Ga0068871_100063406 3300006358 Bacteria 3023
19 Ga0075428_100136813 3300006844 Bacteria 2664
20 Ga0075428_100259826 3300006844 Bacteria 1870
21 Ga0075430_100038404 3300006846 Bacteria 4055
22 Ga0075431_100020475 3300006847 Bacteria 6757
23 Ga0099822_1000838 3300006943 Bacteria 32461
24 Ga0099794_10014882 3300007265 Bacteria 3420
25 Ga0099795_10007671 3300007788 Bacteria 3029
26 Ga0111539_10001182 3300009094 Bacteria 34658
27 Ga0111539_10310302 3300009094 Bacteria 1836
28 Ga0114129_10349200 3300009147 Bacteria 1960
29 Ga0105248_10039473 3300009177 Bacteria 5288
30 Ga0105237_10162235 3300009545 Bacteria 2234
31 Ga0105239_10957321 3300010375 Bacteria 983
32 Ga0157370_10056917 3300013104 Bacteria 3720
33 Ga0157370_10098190 3300013104 Bacteria 2747
34 Ga0157369_10004156 3300013105 Bacteria 17145
35 Ga0157372_10033114 3300013307 Bacteria 5674
36 Ga0157375_10004922 3300013308 Bacteria 11615
37 Ga0163163_10030849 3300014325 Bacteria 5169
38 Ga0157379_10048188 3300014968 Bacteria 3803
39 Ga0182007_10047134 3300015262 Bacteria 1426
40 Ga0213872_10056044 3300021361 Bacteria 1786
41 Ga0213876_10014940 3300021384 Bacteria 4116
42 Ga0213876_10037993 3300021384 Bacteria 2540
43 Ga0209564_1001812 3300025295 Bacteria 19723
44 Ga0209758_1000589 3300025297 Bacteria 56586
45 Ga0209050_1022392 3300025298 Bacteria 2265
46 Ga0209257_1001900 3300025304 Bacteria 22592
47 Ga0207693_10032502 3300025915 Bacteria 4118
48 Ga0207700_10021538 3300025928 Bacteria 4404
49 Ga0207644_10004589 3300025931 Bacteria 8985
50 Ga0207711_10077383 3300025941 Bacteria 2899
51 Ga0207677_10062659 3300026023 Bacteria 2581
52 Ga0207703_10095993 3300026035 Bacteria 2502
53 Ga0207639_10013879 3300026041 Bacteria 5650
54 Ga0207641_10041047 3300026088 Bacteria 3877
55 Ga0207641_10303042 3300026088 Bacteria 1510
56 Ga0207676_10021949 3300026095 Bacteria 4689
57 Ga0207698_10034104 3300026142 Bacteria 3707
58 Ga0207698_10143353 3300026142 Bacteria 2062
59 Ga0209589_1000007 3300027357 Bacteria 425699
60 Ga0209489_100008 3300027361 Bacteria 425699
61 Ga0209700_100009 3300027363 Bacteria 425699
62 Ga0209179_1015905 3300027512 Bacteria 1404
63 Ga0207428_10054651 3300027907 Bacteria 3180
64 Ga0268266_10446484 3300028379 Bacteria 1229
65 Ga0307511_10118874 3300030521 Bacteria 1644
66 Ga0265763_1000610 3300030763 Bacteria 2251
67 Ga0307513_10004578 3300031456 Bacteria 18434
68 Ga0307508_10000058 3300031616 Bacteria 125293
69 Ga0307508_10092910 3300031616 Bacteria 2606
70 Ga0307514_10020838 3300031649 Bacteria 5346
71 Ga0307516_10001965 3300031730 Bacteria 28151
72 Ga0307516_10009786 3300031730 Bacteria 10635
73 Ga0307516_10193095 3300031730 Bacteria 1760
74 Ga0307414_10097739 3300032004 Bacteria 2201
75 Ga0316215_1000935 3300033544 Bacteria 2848
76 Ga0373927_0118518 3300035695 Bacteria 1727
77 Ga0372808_003460 3300036459 Bacteria 1939
78 Ga0310109_008088 3300036534 Bacteria 1397
79 Ga0395900_0359124 3300037418 Bacteria 1429
80 Ga0395901_0070330 3300038443 Bacteria 3646
81 Ga0395901_0129910 3300038443 Bacteria 2647
82 Ga0436365_1425742 3300039437 Bacteria 3967
83 Ga0436365_1565042 3300039437 Bacteria 3385
84 Ga0436361_0295139 3300039447 Bacteria 1814
85 Ga0495627_001092 3300046453 Bacteria 17716
86 Ga0495638_0045999 3300046460 Bacteria 2743
87 Ga0495616_0000164 3300046513 Bacteria 58237
88 Ga0495632_0000484 3300046519 Bacteria 37756
89 Ga0495642_0043334 3300046528 Bacteria 1835
90 Ga0495625_0019579 3300046660 Bacteria 5244
91 Ga0495625_0114263 3300046660 Bacteria 1843
92 Ga0495669_0153702 3300046684 Bacteria 1090
93 Ga0495671_0053747 3300046692 Bacteria 1998
94 Ga0495660_0001448 3300046810 Bacteria 16255
95 Ga0495673_0000340 3300047469 Bacteria 59502
96 Ga0495673_0000991 3300047469 Bacteria 25351
97 Ga0496102_0069911 3300048905 Bacteria 3223
98 Ga0496103_0066989 3300048906 Bacteria 2242
99 Ga0496104_0014109 3300048907 Bacteria 7212
100 Ga0496106_0000542 3300048909 Bacteria 26766
101 Ga0496106_0143215 3300048909 Bacteria 1881
102 Ga0496108_0253660 3300048911 Bacteria 1531
103 Ga0496109_0014233 3300048912 Bacteria 6920
104 Ga0496109_0082711 3300048912 Bacteria 2959
105 Ga0496110_0018165 3300048913 Bacteria 5892
106 Ga0496111_0176682 3300048914 Bacteria 1587
107 Ga0496112_0182855 3300048915 Bacteria 2060
108 Ga0496112_0214151 3300048915 Bacteria 1883
109 Ga0496112_0225813 3300048915 Bacteria 1828
110 Ga0496113_0076823 3300048916 Bacteria 2552
111 Ga0496113_0278080 3300048916 Bacteria 1338
112 Ga0496114_0224021 3300048917 Bacteria 1651
113 Ga0496115_0181587 3300048918 Bacteria 1739
114 Ga0496116_0135975 3300048919 Bacteria 1392
115 Ga0496117_0072400 3300048920 Bacteria 2304
116 Ga0496118_0005365 3300048921 Bacteria 14594
117 Ga0496119_0072439 3300048922 Bacteria 2013
118 Ga0496119_0165862 3300048922 Bacteria 1170
119 Ga0496121_0000099 3300048924 Bacteria 200160
120 Ga0496121_0211438 3300048924 Bacteria 1374
121 Ga0496124_0000112 3300048927 Bacteria 166282
122 Ga0496124_0003644 3300048927 Bacteria 18681
123 Ga0496126_0004537 3300048929 Bacteria 16511
124 Ga0496126_0035499 3300048929 Bacteria 4673
125 Ga0496126_0040953 3300048929 Bacteria 4292
126 Ga0496126_0061333 3300048929 Bacteria 3379
127 Ga0501033_0172925 3300049570 Bacteria 1551
128 Ga0501046_0188660 3300049580 Bacteria 1538
129 Ga0501073_0340650 3300049589 Bacteria 1035
130 Ga0501044_0024397 3300049823 Bacteria 6421
131 nmdc:mga03683_58831_c1 3300050489 Bacteria 1620
132 nmdc:mga0yw44_152697_c1 3300050492 Unclassified 1507
133 nmdc:mga07m45_61730_c1 3300050496 Bacteria 2123
134 nmdc:mga05p37_420240_c1 3300050507 Bacteria 1556
135 nmdc:mga0qj67_38000_c1 3300050509 Bacteria 3775
136 nmdc:mga06r32_14808_c1 3300050510 Bacteria 7077
137 Ga0500583_0005964 3300053092 Bacteria 4143
138 Ga0500651_0032786 3300053093 Bacteria 3275
139 Ga0500566_0003845 3300053094 Bacteria 8952
140 Ga0500641_0004282 3300053096 Bacteria 5038
141 Ga0500593_000652 3300053117 Bacteria 13240
142 Ga0500595_004261 3300053119 Bacteria 6452
143 Ga0500595_054257 3300053119 Bacteria 1231
144 Ga0500614_006940 3300053123 Bacteria 2381
145 Ga0500642_0082903 3300053130 Bacteria 1475
146 Ga0500603_014593 3300053150 Bacteria 1837
147 Ga0500616_0012991 3300053153 Bacteria 4850
148 Ga0500636_0005008 3300053177 Bacteria 7521
149 Ga0500636_0078509 3300053177 Bacteria 1905
150 Ga0500636_0095196 3300053177 Bacteria 1700
151 Ga0500637_0001193 3300053178 Bacteria 10821
152 Ga0500637_0115000 3300053178 Bacteria 1560
153 Ga0500661_002399 3300055283 Bacteria 3539
154 2509141493 2508501127 Bacteria 7037543
155 2511122797 2510917020 Bacteria 5657507
156 2517895145 2517572143 Bacteria 9484767
157 2524536273 2524023228 Bacteria 10118060
158 2585152104 2582581280 Bacteria 5994497
159 2585194412 2582581293 Bacteria 5907401
160 2643922687 2643221583 Bacteria 5218014
161 2643998831 2643221598 Bacteria 4578346
162 2671121823 2667528175 Bacteria 7532676
163 2793069100 2791355197 Bacteria 8420563
164 2819540286 2818991435 Bacteria 5433759
165 2819647646 2818991454 Bacteria 5563326
166 2821448262 2821443989 Bacteria 7658172
167 2854901329 2854896431 Bacteria 5869725
168 2869165039 2869162929 Bacteria 6399702
169 2885316372 2885312484 Bacteria 6415165
170 2885379453 2885374607 Bacteria 8927485
171 2906611809
172 2908740666 2908739725 Bacteria 8628932
173 2922427487
174 3005477206 3005474847 Bacteria 9259049
175 8006938410 8006933436 Bacteria 10410654
176 8006978486 8006973647 Bacteria 10679141
177 8019570698 8019565922 Bacteria 9639779
178 8055622727 8055617313 Bacteria 7548464
179 Ga0500616_0146836
180 JGI25153J46596_10027886
181 Ga0055531_10002419
182 Ga0065165_1002009
183 Ga0070670_100104841
184 Ga0068868_100099359
185 Ga0070671_100008911
186 Ga0070713_100025205
187 Ga0070681_10215927
188 Ga0070684_100161791
189 Ga0070697_100070538
190 Ga0068853_100015938
191 Ga0068855_100029850
192 Ga0068852_100165449
193 Ga0068864_100029594
194 Ga0070717_10011306
195 Ga0075369_10022827
196 Ga0068871_100063406
197 Ga0075428_100136813
198 Ga0075428_100259826
199 Ga0075430_100038404
200 Ga0075431_100020475
201 Ga0099822_1000838
202 Ga0099794_10014882
203 Ga0099795_10007671
204 Ga0111539_10001182
205 Ga0111539_10310302
206 Ga0114129_10349200
207 Ga0105248_10039473
208 Ga0105237_10162235
209 Ga0105239_10957321
210 Ga0157370_10056917
211 Ga0157370_10098190
212 Ga0157369_10004156
213 Ga0157372_10033114
214 Ga0157375_10004922
215 Ga0163163_10030849
216 Ga0157379_10048188
217 Ga0182007_10047134
218 Ga0213872_10056044
219 Ga0213876_10014940
220 Ga0213876_10037993
221 Ga0209564_1001812
222 Ga0209758_1000589
223 Ga0209050_1022392
224 Ga0209257_1001900
225 Ga0207693_10032502
226 Ga0207700_10021538
227 Ga0207644_10004589
228 Ga0207711_10077383
229 Ga0207677_10062659
230 Ga0207703_10095993
231 Ga0207639_10013879
232 Ga0207641_10041047
233 Ga0207641_10303042
234 Ga0207676_10021949
235 Ga0207698_10034104
236 Ga0207698_10143353
237 Ga0209589_1000007
238 Ga0209489_100008
239 Ga0209700_100009
240 Ga0209179_1015905
241 Ga0207428_10054651
242 Ga0268266_10446484
243 Ga0307511_10118874
244 Ga0265763_1000610
245 Ga0307513_10004578
246 Ga0307508_10000058
247 Ga0307508_10092910
248 Ga0307514_10020838
249 Ga0307516_10001965
250 Ga0307516_10009786
251 Ga0307516_10193095
252 Ga0307414_10097739
253 Ga0316215_1000935
254 Ga0373927_0118518
255 Ga0372808_003460
256 Ga0310109_008088
257 Ga0395900_0359124
258 Ga0395901_0070330
259 Ga0395901_0129910
260 Ga0436365_1425742
261 Ga0436365_1565042
262 Ga0436361_0295139
263 Ga0495627_001092
264 Ga0495638_0045999
265 Ga0495616_0000164
266 Ga0495632_0000484
267 Ga0495642_0043334
268 Ga0495625_0019579
269 Ga0495625_0114263
270 Ga0495669_0153702
271 Ga0495671_0053747
272 Ga0495660_0001448
273 Ga0495673_0000340
274 Ga0495673_0000991
275 Ga0496102_0069911
276 Ga0496103_0066989
277 Ga0496104_0014109
278 Ga0496106_0000542
279 Ga0496106_0143215
280 Ga0496108_0253660
281 Ga0496109_0014233
282 Ga0496109_0082711
283 Ga0496110_0018165
284 Ga0496111_0176682
285 Ga0496112_0182855
286 Ga0496112_0214151
287 Ga0496112_0225813
288 Ga0496113_0076823
289 Ga0496113_0278080
290 Ga0496114_0224021
291 Ga0496115_0181587
292 Ga0496116_0135975
293 Ga0496117_0072400
294 Ga0496118_0005365
295 Ga0496119_0072439
296 Ga0496119_0165862
297 Ga0496121_0000099
298 Ga0496121_0211438
299 Ga0496124_0000112
300 Ga0496124_0003644
301 Ga0496126_0004537
302 Ga0496126_0035499
303 Ga0496126_0040953
304 Ga0496126_0061333
305 Ga0501033_0172925
306 Ga0501046_0188660
307 Ga0501073_0340650
308 Ga0501044_0024397
309 nmdc:mga03683_58831_c1
310 nmdc:mga0yw44_152697_c1
311 nmdc:mga07m45_61730_c1
312 nmdc:mga05p37_420240_c1
313 nmdc:mga0qj67_38000_c1
314 nmdc:mga06r32_14808_c1
315 Ga0500583_0005964
316 Ga0500651_0032786
317 Ga0500566_0003845
318 Ga0500641_0004282
319 Ga0500593_000652
320 Ga0500595_004261
321 Ga0500595_054257
322 Ga0500614_006940
323 Ga0500642_0082903
324 Ga0500603_014593
325 Ga0500616_0012991
326 Ga0500636_0005008
327 Ga0500636_0078509
328 Ga0500636_0095196
329 Ga0500637_0001193
330 Ga0500637_0115000
331 Ga0500661_002399
332 2509141493
333 2511122797
334 2517895145
335 2524536273
336 2585152104
337 2585194412
338 2643922687
339 2643998831
340 2671121823
341 2793069100
342 2819540286
343 2819647646
344 2821448262
345 2854901329
346 2869165039
347 2885316372
348 2885379453
349 2906611809
350 2908740666
351 2922427487
352 3005477206
353 8006938410
354 8006978486
355 8019570698
356 8055622727

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r4e-assembly1.cif.gz_B structure of glnr-dna complex 0.9433 8 74
7tea-assembly2.cif.gz_C crystal structure of s. aureus glnr-dna complex 0.9271 8 73
4r4e-assembly1.cif.gz_A structure of glnr-dna complex 0.855 5 74
7tec-assembly1.cif.gz_A-2 structure of the listeria monocytogenes glnr-dna complex to 3.45 angstrom 0.8547 3 67
5i44-assembly4.cif.gz_F-2 structure of raca-dna complex; p21 form 0.8489 7 66
ID Description Score Start End Superfamily
af_P33358_1_73_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9121 6 76 1.10.1660.10
af_O06302_4_79_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.906 6 59 1.10.1660.10
3hh0C01 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8963 6 73 1.10.1660.10
af_P33358_1_73_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8777 6 76 1.10.1660.10
3hh0D01 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8638 6 69 1.10.1660.10
ID Description Score Start End GO Terms
AF-A0A527ZJR8-F1-model_v4 MerR family transcriptional regulator 0.9415 183 333
AF-A0A7V8FRU9-F1-model_v4 AAA+ ATPase domain-containing protein 0.9297 134 335
AF-A0A1I5UCN0-F1-model_v4 DNA-binding transcriptional regulator, MerR family 0.9209 1 344 GO:0003677
GO:0003700
AF-D3F0T3-F1-model_v4 Transcriptional regulator, MerR family 0.9188 1 60 GO:0003677
GO:0003700
GO:0005829
AF-A0A1I5UCN0-F1-model_v4 DNA-binding transcriptional regulator, MerR family 0.9183 1 344 GO:0003677
GO:0003700

Map