F204412

General Info

Members Datasets Scaffolds Average Seq Length
148 107 117 438

Family's Representative Sequence

Representative Sequence 3300049776|Ga0501280_000727|Ga0501280_000727_2713_4062
Length 449
Sequence MSEFLSYEMIALLMFSSMMLSMLTGQRVFATIGFVGVAAAALLWGNGGFEMGFSAGMKLMKWYPLLTLPLFIYMGYMLSESGIAEDLYKAFHVWFGGMPGGLAIGTIGLMVVISAMNGLSVAGMAIGASIALPELLRRGYDKIMVSGVIQAGSSLGILIPPSVVLVLYGMIARQPVSQLWLAGVFPGLLLATLFCIYIYIRCRLNPALGPALPKEERDMPMRAKLKLARAGVLPFLIFFLMMGLFLMGVTSLVESSAVGALGALFAAWYKGRLTKAVWNRVLEQTLGISCMFMWIILAALCFGAVFDGLGAVRAIENLLVNDIGLTPWQILIMMQLSFLVMGAFLDDTAMLVIVAPLYIPLVGKLDLGVDNALIWYGVLYTITCQIAYMTPPFGYNLFLMKAMAPPDFRLIDIYRSVVPFVLIMLLGMAIIMIFPQIATWLPSQIYLRG

Samples

Sample ID Description Type Environment
1 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
2 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
3 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
4 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
5 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
6 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
7 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
8 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
9 2751185800 Brucella pituitosa AA2 Isolate Unclassified
10 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
11 2808606373 Pseudomonas sp. SLBN-2 Isolate Unclassified
12 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
13 2854911287 Brucella lupini LUP21 Isolate Unclassified
14 2869162929 Mesorhizobium sanjuanii BSA136 Isolate Nodule
15 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
16 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
17 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
18 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
19 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
20 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
21 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
22 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
23 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
24 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
25 2937843397 Mesorhizobium xinjiangense lm94 Isolate Rhizosphere
26 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
27 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
28 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
29 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
30 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
31 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
32 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
33 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
34 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
35 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
36 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
37 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
38 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
39 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
40 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
41 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
42 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
43 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
46 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
47 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
48 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
49 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
50 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
51 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
52 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
53 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
54 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
55 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
56 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
57 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
58 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
59 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
60 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
61 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
62 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
63 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
64 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
65 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
66 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
67 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
68 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
69 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
84 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
87 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
88 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
101 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
102 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
105 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
106 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
107 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.7
Metatranscriptomes 1.35
Isolates 20.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 4.05
Rhizoplane 0.68
Rhizosphere 75.68
Stem 0
Stem Tuber 0
Unclassified 19.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10014563 3300005981 Bacteria 6148
2 Ga0081538_10097620 3300005981 Bacteria 1492
3 Ga0316575_10034482 3300031665 Bacteria 1988
4 Ga0316579_10069561 3300031691 Bacteria 1666
5 Ga0316576_10006562 3300031727 Bacteria 7257
6 Ga0316576_10096595 3300031727 Bacteria 2205
7 Ga0316578_10007524 3300031728 Bacteria 5471
8 Ga0316578_10061157 3300031728 Bacteria 2218
9 Ga0316577_10056363 3300031733 Bacteria 2193
10 Ga0307413_10048139 3300031824 Bacteria 2546
11 Ga0307410_10015353 3300031852 Bacteria 4540
12 Ga0307410_10045211 3300031852 Bacteria 2930
13 Ga0307410_10092607 3300031852 Bacteria 2149
14 Ga0307416_100095821 3300032002 Bacteria 2564
15 Ga0307414_10012208 3300032004 Bacteria 5069
16 Ga0307414_10012496 3300032004 Bacteria 5022
17 Ga0316583_10000371 3300032133 Bacteria 12933
18 Ga0316585_10026983 3300032137 Bacteria 1790
19 Ga0316593_10004598 3300032168 Bacteria 3558
20 Ga0316593_10004665 3300032168 Bacteria 3538
21 Ga0316574_0002084 3300035398 Bacteria 9891
22 Ga0316582_0045549 3300036647 Bacteria 2762
23 Ga0316582_0050576 3300036647 Bacteria 2633
24 Ga0316584_0003831 3300036712 Bacteria 9861
25 Ga0316584_0024956 3300036712 Bacteria 4380
26 Ga0395899_0000044 3300037312 Bacteria 248735
27 Ga0395900_0000042 3300037418 Bacteria 242667
28 Ga0395898_0000080 3300037466 Bacteria 242667
29 Ga0395905_0000044 3300037471 Bacteria 242916
30 Ga0395901_0000027 3300038443 Bacteria 244204
31 Ga0395901_0035280 3300038443 Bacteria 5167
32 Ga0400484_32680 3300038725 Bacteria 10037
33 Ga0400490_36424 3300038726 Bacteria 14097
34 Ga0400488_13728 3300038741 Bacteria 14667
35 Ga0400488_25323 3300038741 Bacteria 17232
36 Ga0400483_158442 3300039062 Bacteria 3623
37 Ga0400483_165481 3300039062 Bacteria 3353
38 Ga0400483_170907 3300039062 Bacteria 13934
39 Ga0400487_39774 3300039110 Bacteria 2032
40 Ga0439436_0000439 3300041404 Bacteria 10556
41 Ga0439438_000806 3300041405 Bacteria 14016
42 Ga0439447_006886 3300041407 Bacteria 3647
43 Ga0439466_0016721 3300041411 Bacteria 2648
44 Ga0439452_002050 3300042010 Bacteria 7661
45 Ga0439446_0001083 3300042156 Bacteria 6009
46 Ga0439434_0000742 3300042435 Bacteria 9362
47 Ga0439464_0002020 3300042439 Bacteria 4921
48 Ga0496119_0012762 3300048922 Bacteria 6782
49 Ga0496122_0000840 3300048925 Bacteria 58107
50 Ga0496122_0039525 3300048925 Bacteria 3761
51 Ga0496123_0000336 3300048926 Bacteria 89161
52 Ga0496124_0002555 3300048927 Bacteria 23595
53 Ga0496125_0004709 3300048928 Bacteria 15548
54 Ga0496126_0010073 3300048929 Bacteria 9972
55 Ga0501031_0000024 3300049568 Bacteria 89705
56 Ga0501032_0000007 3300049569 Bacteria 253881
57 Ga0501032_0011390 3300049569 Bacteria 6388
58 Ga0501032_0012902 3300049569 Bacteria 5957
59 Ga0501033_0000051 3300049570 Bacteria 111291
60 Ga0501034_0000029 3300049571 Bacteria 253881
61 Ga0501034_0000732 3300049571 Bacteria 49733
62 Ga0501034_0053770 3300049571 Bacteria 4054
63 Ga0501034_0156913 3300049571 Bacteria 2249
64 Ga0501034_0246457 3300049571 Bacteria 1732
65 Ga0501036_0000004 3300049572 Bacteria 253881
66 Ga0501036_0009099 3300049572 Bacteria 8170
67 Ga0501037_0000004 3300049573 Bacteria 253989
68 Ga0501038_0000005 3300049574 Bacteria 253881
69 Ga0501038_0021899 3300049574 Bacteria 5733
70 Ga0501039_0000009 3300049575 Bacteria 253881
71 Ga0501039_0005618 3300049575 Bacteria 9492
72 Ga0501040_0001258 3300049576 Bacteria 16111
73 Ga0501040_0024082 3300049576 Bacteria 4085
74 Ga0501040_0069344 3300049576 Bacteria 2432
75 Ga0501042_0000068 3300049578 Bacteria 37814
76 Ga0501042_0161295 3300049578 Bacteria 1618
77 Ga0501043_0000646 3300049579 Bacteria 30764
78 Ga0501046_0107694 3300049580 Bacteria 2132
79 Ga0501047_0009192 3300049581 Bacteria 9330
80 Ga0501048_0003757 3300049582 Bacteria 11588
81 Ga0501068_0006415 3300049584 Bacteria 6483
82 Ga0501069_0119793 3300049585 Bacteria 1503
83 Ga0501070_0015812 3300049586 Bacteria 6345
84 Ga0501071_0034353 3300049587 Bacteria 3609
85 Ga0501072_0013383 3300049588 Bacteria 6279
86 Ga0501072_0066211 3300049588 Bacteria 2850
87 Ga0501072_0110294 3300049588 Bacteria 2190
88 Ga0501074_0022984 3300049590 Bacteria 4535
89 Ga0501074_0056012 3300049590 Bacteria 2841
90 Ga0501074_0206096 3300049590 Bacteria 1401
91 Ga0501075_0069222 3300049591 Bacteria 2667
92 Ga0501076_0021461 3300049592 Bacteria 4954
93 Ga0501076_0039142 3300049592 Bacteria 3723
94 Ga0501076_0061454 3300049592 Bacteria 2989
95 Ga0501077_0043234 3300049593 Bacteria 2864
96 Ga0501077_0043972 3300049593 Bacteria 2838
97 Ga0501079_0000276 3300049741 Bacteria 31644
98 Ga0501079_0007786 3300049741 Bacteria 8109
99 Ga0501079_0017657 3300049741 Bacteria 5450
100 Ga0501080_0008629 3300049742 Bacteria 9248
101 Ga0501080_0126703 3300049742 Bacteria 2365
102 Ga0501080_0159302 3300049742 Bacteria 2085
103 Ga0501081_0007841 3300049743 Bacteria 6923
104 Ga0501083_0096665 3300049744 Bacteria 1949
105 Ga0501280_000727 3300049776 Bacteria 7278
106 Ga0501035_0000014 3300049822 Bacteria 253874
107 Ga0501044_0000012 3300049823 Bacteria 253881
108 Ga0501045_0006604 3300049824 Bacteria 8036
109 Ga0501045_0274525 3300049824 Bacteria 1255
110 Ga0501084_0004295 3300054114 Bacteria 11605
111 Ga0501084_0110627 3300054114 Bacteria 2308
112 Ga0590074_002677 3300059423 Bacteria 2929
113 Ga0590077_003609 3300059426 Bacteria 3197
114 Ga0501082_0013335 3300060353 Bacteria 7068
115 Ga0501082_0015211 3300060353 Bacteria 6630
116 Ga0501082_0113673 3300060353 Bacteria 2344
117 Ga0530510_0012513 3300061734 Bacteria 5960

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049824 Ga0501045_0274525 Ga0501045_0274525_51_1238 395
2 3300039062 Ga0400483_158442 Ga0400483_158442_234_1565 403
3 3300049576 Ga0501040_0069344 Ga0501040_0069344_324_1550 403
4 3300048927 Ga0496124_0002555 Ga0496124_0002555_4102_5424 409
5 3300048929 Ga0496126_0010073 Ga0496126_0010073_4932_6254 409
6 3300042439 Ga0439464_0002020 Ga0439464_0002020_2220_3545 416
7 3300038725 Ga0400484_32680 Ga0400484_32680_4533_5855 424
8 3300042156 Ga0439446_0001083 Ga0439446_0001083_1909_3234 424
9 3300049578 Ga0501042_0000068 Ga0501042_0000068_23581_24903 424
10 3300032004 Ga0307414_10012208 Ga0307414_100122082 425
11 3300037312 Ga0395899_0000044 Ga0395899_0000044_104409_105737 425
12 3300037418 Ga0395900_0000042 Ga0395900_0000042_98569_99897 425
13 3300037466 Ga0395898_0000080 Ga0395898_0000080_98569_99897 425
14 3300037471 Ga0395905_0000044 Ga0395905_0000044_143020_144348 425
15 3300038443 Ga0395901_0000027 Ga0395901_0000027_142986_144314 425
16 3300049571 Ga0501034_0000732 Ga0501034_0000732_6056_7381 425
17 3300005981 Ga0081538_10097620 Ga0081538_100976202 428
18 3300041404 Ga0439436_0000439 Ga0439436_0000439_4923_6248 429
19 3300041405 Ga0439438_000806 Ga0439438_000806_7743_9068 429
20 3300041407 Ga0439447_006886 Ga0439447_006886_1698_3023 429
21 3300042010 Ga0439452_002050 Ga0439452_002050_3201_4526 429
22 3300042435 Ga0439434_0000742 Ga0439434_0000742_545_1870 429
23 3300049571 Ga0501034_0156913 Ga0501034_0156913_139_1464 430
24 3300038726 Ga0400490_36424 Ga0400490_36424_3876_5186 431
25 iso_pu_bacteria 2512047086 2512533652 431
26 iso_pu_bacteria 2515154107 2515609055 431
27 iso_pu_bacteria 2524023207 2524448522 431
28 iso_pu_bacteria 2738541317 2738947296 431
29 iso_pu_bacteria 2889790730 2889795550 431
30 iso_pu_bacteria 2889914905 2889916111 431
31 iso_pu_bacteria 2898795034 2898796038 431
32 iso_pu_bacteria 2913308742 2913312607 431
33 iso_pu_bacteria 2917554339 2917555216 431
34 iso_pu_bacteria 2936996657 2936998253 431
35 iso_pu_bacteria 2989771324 2989774882 431
36 iso_pu_bacteria 2996310559 2996314212 431
37 iso_pu_bacteria 8001845381 8001846466 431
38 iso_pu_bacteria 8056875544 8056877264 431
39 iso_pu_bacteria 2513237351 2514587419 432
40 iso_pu_bacteria 2600254954 2600443768 432
41 iso_pu_bacteria 2643221550 2643769875 432
42 iso_pu_bacteria 2643221564 2643837678 432
43 iso_pu_bacteria 2751185800 2753357066 432
44 iso_pu_bacteria 2758568016 2758639352 432
45 iso_pu_bacteria 2808606373 2808905333 432
46 iso_pu_bacteria 2837651117 2837651172 432
47 iso_pu_bacteria 2854911287 2854916300 432
48 iso_pu_bacteria 2869162929 2869164744 432
49 iso_pu_bacteria 2915650412 2915652797 432
50 iso_pu_bacteria 2919679072 2919682040 432
51 iso_pu_bacteria 2937843397 2937846579 432
52 iso_pu_bacteria 8054563764 8054568541 432
53 3300032168 Ga0316593_10004665 Ga0316593_100046651 433
54 iso_pu_bacteria 2891048133 2891050964 433
55 iso_pu_bacteria 2995392953 2995393166 433
56 3300049569 Ga0501032_0012902 Ga0501032_0012902_1326_2657 434
57 3300031727 Ga0316576_10096595 Ga0316576_100965952 435
58 3300031824 Ga0307413_10048139 Ga0307413_100481392 435
59 3300031852 Ga0307410_10015353 Ga0307410_100153532 435
60 3300032002 Ga0307416_100095821 Ga0307416_1000958212 435
61 3300032004 Ga0307414_10012496 Ga0307414_100124963 435
62 3300032133 Ga0316583_10000371 Ga0316583_100003719 435
63 3300036647 Ga0316582_0050576 Ga0316582_0050576_564_1886 435
64 3300038741 Ga0400488_25323 Ga0400488_25323_2001_3323 435
65 3300039062 Ga0400483_165481 Ga0400483_165481_1794_3119 435
66 3300039062 Ga0400483_170907 Ga0400483_170907_6404_7726 435
67 3300039110 Ga0400487_39774 Ga0400487_39774_510_1832 435
68 3300048925 Ga0496122_0000840 Ga0496122_0000840_21903_23225 435
69 3300048926 Ga0496123_0000336 Ga0496123_0000336_59128_60450 435
70 3300049776 Ga0501280_000727 Ga0501280_000727_2713_4062 435
71 3300059423 Ga0590074_002677 Ga0590074_002677_234_1571 435
72 3300059426 Ga0590077_003609 Ga0590077_003609_197_1534 435
73 iso_pu_bacteria 2919704043 2919707425 435
74 3300005981 Ga0081538_10014563 Ga0081538_100145632 436
75 3300031665 Ga0316575_10034482 Ga0316575_100344822 436
76 3300031691 Ga0316579_10069561 Ga0316579_100695612 436
77 3300031727 Ga0316576_10006562 Ga0316576_100065623 436
78 3300031728 Ga0316578_10007524 Ga0316578_100075245 436
79 3300031728 Ga0316578_10061157 Ga0316578_100611572 436
80 3300031733 Ga0316577_10056363 Ga0316577_100563632 436
81 3300031852 Ga0307410_10045211 Ga0307410_100452112 436
82 3300031852 Ga0307410_10092607 Ga0307410_100926072 436
83 3300032137 Ga0316585_10026983 Ga0316585_100269831 436
84 3300032168 Ga0316593_10004598 Ga0316593_100045983 436
85 3300035398 Ga0316574_0002084 Ga0316574_0002084_4200_5525 436
86 3300036647 Ga0316582_0045549 Ga0316582_0045549_887_2212 436
87 3300036712 Ga0316584_0003831 Ga0316584_0003831_7681_9006 436
88 3300036712 Ga0316584_0024956 Ga0316584_0024956_2621_3946 436
89 3300038443 Ga0395901_0035280 Ga0395901_0035280_2327_3655 436
90 3300038741 Ga0400488_13728 Ga0400488_13728_9117_10442 436
91 3300041411 Ga0439466_0016721 Ga0439466_0016721_591_1916 436
92 3300048922 Ga0496119_0012762 Ga0496119_0012762_4208_5533 436
93 3300048925 Ga0496122_0039525 Ga0496122_0039525_1037_2362 436
94 3300048928 Ga0496125_0004709 Ga0496125_0004709_12796_14121 436
95 3300049568 Ga0501031_0000024 Ga0501031_0000024_42631_43956 436
96 3300049569 Ga0501032_0000007 Ga0501032_0000007_206915_208240 436
97 3300049569 Ga0501032_0011390 Ga0501032_0011390_4931_6256 436
98 3300049570 Ga0501033_0000051 Ga0501033_0000051_64339_65664 436
99 3300049571 Ga0501034_0000029 Ga0501034_0000029_45642_46967 436
100 3300049571 Ga0501034_0053770 Ga0501034_0053770_158_1486 436
101 3300049571 Ga0501034_0246457 Ga0501034_0246457_210_1553 436
102 3300049572 Ga0501036_0000004 Ga0501036_0000004_45642_46967 436
103 3300049572 Ga0501036_0009099 Ga0501036_0009099_5137_6462 436
104 3300049573 Ga0501037_0000004 Ga0501037_0000004_206915_208240 436
105 3300049574 Ga0501038_0000005 Ga0501038_0000005_45642_46967 436
106 3300049574 Ga0501038_0021899 Ga0501038_0021899_1300_2625 436
107 3300049575 Ga0501039_0000009 Ga0501039_0000009_45642_46967 436
108 3300049575 Ga0501039_0005618 Ga0501039_0005618_5603_6928 436
109 3300049576 Ga0501040_0001258 Ga0501040_0001258_4733_6058 436
110 3300049576 Ga0501040_0024082 Ga0501040_0024082_524_1849 436
111 3300049578 Ga0501042_0161295 Ga0501042_0161295_21_1346 436
112 3300049579 Ga0501043_0000646 Ga0501043_0000646_26504_27829 436
113 3300049580 Ga0501046_0107694 Ga0501046_0107694_389_1714 436
114 3300049581 Ga0501047_0009192 Ga0501047_0009192_6020_7345 436
115 3300049582 Ga0501048_0003757 Ga0501048_0003757_9051_10376 436
116 3300049584 Ga0501068_0006415 Ga0501068_0006415_1596_2924 436
117 3300049585 Ga0501069_0119793 Ga0501069_0119793_29_1354 436
118 3300049586 Ga0501070_0015812 Ga0501070_0015812_2218_3543 436
119 3300049587 Ga0501071_0034353 Ga0501071_0034353_659_1984 436
120 3300049588 Ga0501072_0013383 Ga0501072_0013383_1366_2691 436
121 3300049588 Ga0501072_0066211 Ga0501072_0066211_25_1350 436
122 3300049588 Ga0501072_0110294 Ga0501072_0110294_687_2012 436
123 3300049590 Ga0501074_0022984 Ga0501074_0022984_1186_2514 436
124 3300049590 Ga0501074_0056012 Ga0501074_0056012_1011_2336 436
125 3300049590 Ga0501074_0206096 Ga0501074_0206096_62_1387 436
126 3300049591 Ga0501075_0069222 Ga0501075_0069222_1051_2376 436
127 3300049592 Ga0501076_0021461 Ga0501076_0021461_224_1549 436
128 3300049592 Ga0501076_0039142 Ga0501076_0039142_274_1599 436
129 3300049592 Ga0501076_0061454 Ga0501076_0061454_1425_2750 436
130 3300049593 Ga0501077_0043234 Ga0501077_0043234_740_2065 436
131 3300049593 Ga0501077_0043972 Ga0501077_0043972_510_1835 436
132 3300049741 Ga0501079_0000276 Ga0501079_0000276_8554_9882 436
133 3300049741 Ga0501079_0007786 Ga0501079_0007786_5631_6956 436
134 3300049741 Ga0501079_0017657 Ga0501079_0017657_3900_5225 436
135 3300049742 Ga0501080_0008629 Ga0501080_0008629_2022_3350 436
136 3300049742 Ga0501080_0126703 Ga0501080_0126703_595_1920 436
137 3300049742 Ga0501080_0159302 Ga0501080_0159302_645_1970 436
138 3300049743 Ga0501081_0007841 Ga0501081_0007841_1678_3003 436
139 3300049744 Ga0501083_0096665 Ga0501083_0096665_453_1778 436
140 3300049822 Ga0501035_0000014 Ga0501035_0000014_45642_46967 436
141 3300049823 Ga0501044_0000012 Ga0501044_0000012_206915_208240 436
142 3300049824 Ga0501045_0006604 Ga0501045_0006604_5466_6791 436
143 3300054114 Ga0501084_0004295 Ga0501084_0004295_4617_5942 436
144 3300054114 Ga0501084_0110627 Ga0501084_0110627_379_1704 436
145 3300060353 Ga0501082_0013335 Ga0501082_0013335_4387_5715 436
146 3300060353 Ga0501082_0015211 Ga0501082_0015211_3683_5008 436
147 3300060353 Ga0501082_0113673 Ga0501082_0113673_128_1453 436
148 3300061734 Ga0530510_0012513 Ga0530510_0012513_3892_5217 436

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06808

DctM

Tripartite ATP-independent periplasmic transporter, DctM component

7

437

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qha-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.8843 4 435
7qha-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.8666 4 435
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.8632 5 433
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.8332 5 433
6okz-assembly2.cif.gz_A structure of vcindy bound to fumarate 0.7035 6 422
ID Description Score Start End Superfamily
af_A0A1D6M6I1_208_515_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3433 285 415 1.20.1250.20
af_A0A1D6IHU8_35_236_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.2945 62 289 1.20.1250.20
5lnxH03 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.293 61 149 1.20.140.10
af_A0A1D6IHU8_35_236_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.2868 62 289 1.20.1250.20
af_Q91X46_105_318_1.20.900.10 Mainly Alpha;Up-down Bundle;Dbl Homology Domain; Chain A;Dbl homology (DH) domain 0.2809 67 284 1.20.900.10
ID Description Score Start End GO Terms
AF-A0A7C5R675-F1-model_v4 TRAP transporter large permease subunit 0.9718 91 436 GO:0005886
GO:0022857
AF-A0A7C5R675-F1-model_v4 TRAP transporter large permease subunit 0.969 91 436 GO:0005886
GO:0022857
AF-A0A1W9WTE8-F1-model_v4 TRAP C4-dicarboxylate transport system permease DctM subunit domain-containing protein 0.9615 141 436 GO:0005886
GO:0022857
AF-A0A2W4QW32-F1-model_v4 TRAP transporter large permease protein 0.9611 55 436 GO:0005886
GO:0022857
AF-A0A1F8P583-F1-model_v4 TRAP C4-dicarboxylate transport system permease DctM subunit domain-containing protein 0.9609 66 433 GO:0005886
GO:0022857

Feature Viewer

pLDDT pTM Quality
80.39 0.78 High
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Predicted Structure (AlphaFold2)

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