F168890
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 137 | 107 | 274 | 324 |
Family's Representative Sequence
| Representative Sequence | 3300005347|Ga0070668_100037640|Ga0070668_1000376402 |
| Length | 349 |
| Sequence | MTGRGDGPGAGAAGGLSRHVPVLLAEVCTALDAKRGGAYIDGTFGAGGYTRAILDAHPQNKVVAIDRDPDAIAGGASLAAKFKKRLMLVPGRFGDLDEIAEVQGFDSLDGVVLDIGVSSMQIDQAERGFSFRNEGPLDMRMERSGPSAADLVNESSEAELADIFYHYGEERRARAVARAIIEMRRRQPFETTRQLADLVASLIRQEPSGIHPATRVFQGLRIAVNDELGELVRALHAAERILKPGGRLVVVTFHSLEDRIVKQFFAARTGRAPAGSRHLPTAAAPEPTFDAITRGPVGPSEQEMAQNPRARSAKLRAGARTDTPPQEPLSAIAMLAELPQTAEKRGGRR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 2 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 3 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 4 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 10 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 11 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 12 | 3300007076 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Metagenome | Rhizosphere |
| 13 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 14 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 15 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 16 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 17 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 18 | 3300013250 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 | Metagenome | Rhizosphere |
| 19 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 20 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 21 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 22 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 23 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 24 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 25 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 26 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 27 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Metagenome | Rhizosphere |
| 36 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 37 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 38 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 39 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 40 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 41 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 42 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 43 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 44 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 45 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 46 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 47 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 48 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 49 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 50 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 51 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 52 | 3300038741 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 | Metagenome | Unclassified |
| 53 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 54 | 3300039110 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 | Metagenome | Unclassified |
| 55 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 56 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 57 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 58 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 59 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 60 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 61 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 64 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 65 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 66 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 67 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 68 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 69 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 70 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 71 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 72 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 73 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 74 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 75 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 77 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 78 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 79 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 80 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 81 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 82 | 3300053177 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere | Metagenome | Endosphere |
| 83 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 84 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 85 | 2508501114 | Microvirga lotononidis WSM3557 | Isolate | Nodule |
| 86 | 2595698237 | Methylobacterium sp. UNCCL125 | Isolate | Unclassified |
| 87 | 2643221734 | Bosea sp. Root670 | Isolate | Unclassified |
| 88 | 2738541281 | Methylobacterium sp. GV094 | Isolate | Unclassified |
| 89 | 2738543032 | Methylobacterium sp. GV104 | Isolate | Unclassified |
| 90 | 2773857925 | Microvirga vignae BR3299 | Isolate | Unclassified |
| 91 | 2775506901 | Microvirga ossetica V5/3m | Isolate | Unclassified |
| 92 | 2818991467 | Bosea vestrisii 3192 | Isolate | Unclassified |
| 93 | 2829745981 | Methylorubrum rhodinum DSM 2163 | Isolate | Rhizosphere |
| 94 | 2835312727 | Microvirga calopogonii CCBAU 65841 | Isolate | Nodule |
| 95 | 2841917233 | Bosea caraganae RCAM04680 | Isolate | Nodule |
| 96 | 2842698319 | Methylobacterium sp. R-72139 | Isolate | Unclassified |
| 97 | 2882456835 | Microvirga sp. KLBC 81 | Isolate | Unclassified |
| 98 | 2884298095 | Microvirga thermotolerans HR1 | Isolate | Rhizosphere |
| 99 | 2889306138 | Methylobacterium sp. PvR107 | Isolate | Rhizosphere |
| 100 | 2889790730 | Chelativorans xinjiangense lm93 | Isolate | Rhizosphere |
| 101 | 2889914905 | Chelativorans alearense UJN715 | Isolate | Rhizosphere |
| 102 | 2894232714 | Microvirga tunisiensis Lmie10 | Isolate | Nodule |
| 103 | 2902330777 | Methylobacterium sp. 2A | Isolate | Unclassified |
| 104 | 2902405164 | Methylobacterium sp. P1-11 | Isolate | Unclassified |
| 105 | 2917699015 | Bosea sp. F3-2 | Isolate | Rhizosphere |
| 106 | 2919138771 | Novosphingobium sp. 1748 | Isolate | Rhizosphere |
| 107 | 2928125067 | Methylobacterium sp. 1973 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 83.21 |
| Metatranscriptomes | 0 |
| Isolates | 16.79 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 9.49 |
| Nodule | 2.92 |
| Rhizoplane | 10.22 |
| Rhizosphere | 61.31 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.65 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070668_100037640 | 3300005347 | Bacteria | 3695 |
| 2 | Ga0055526_1000470 | 3300003771 | Bacteria | 32053 |
| 3 | Ga0055526_1000802 | 3300003771 | Bacteria | 23436 |
| 4 | Ga0055524_1000020 | 3300003775 | Bacteria | 227971 |
| 5 | Ga0070676_10000067 | 3300005328 | Bacteria | 34841 |
| 6 | Ga0070660_100018353 | 3300005339 | Bacteria | 5111 |
| 7 | Ga0070678_100142979 | 3300005456 | Bacteria | 1917 |
| 8 | Ga0070695_100052222 | 3300005545 | Bacteria | 2626 |
| 9 | Ga0070717_10000008 | 3300006028 | Bacteria | 299056 |
| 10 | Ga0075428_100007274 | 3300006844 | Bacteria | 12263 |
| 11 | Ga0075431_100243683 | 3300006847 | Bacteria | 1828 |
| 12 | Ga0075429_100005925 | 3300006880 | Bacteria | 10550 |
| 13 | Ga0075435_100413319 | 3300007076 | Bacteria | 1161 |
| 14 | Ga0105240_10001561 | 3300009093 | Bacteria | 38845 |
| 15 | Ga0105240_10101382 | 3300009093 | Bacteria | 3501 |
| 16 | Ga0114129_10011805 | 3300009147 | Bacteria | 12427 |
| 17 | Ga0105243_10067104 | 3300009148 | Bacteria | 2887 |
| 18 | Ga0105243_10181942 | 3300009148 | Bacteria | 1829 |
| 19 | Ga0105242_10184387 | 3300009176 | Bacteria | 1843 |
| 20 | Ga0105237_10054720 | 3300009545 | Bacteria | 3998 |
| 21 | Ga0105237_10180108 | 3300009545 | Bacteria | 2114 |
| 22 | Ga0171462_1006 | 3300013250 | Bacteria | 432986 |
| 23 | Ga0163163_10001902 | 3300014325 | Bacteria | 17663 |
| 24 | Ga0157380_10013201 | 3300014326 | Bacteria | 6015 |
| 25 | Ga0209130_1000178 | 3300025284 | Bacteria | 90293 |
| 26 | Ga0209675_1001055 | 3300025291 | Bacteria | 17091 |
| 27 | Ga0209025_1000008 | 3300025294 | Bacteria | 1130876 |
| 28 | Ga0209025_1003835 | 3300025294 | Bacteria | 13686 |
| 29 | Ga0209564_1000049 | 3300025295 | Bacteria | 362075 |
| 30 | Ga0209564_1000065 | 3300025295 | Bacteria | 315205 |
| 31 | Ga0209256_1000014 | 3300025299 | Bacteria | 687409 |
| 32 | Ga0209256_1000208 | 3300025299 | Bacteria | 110551 |
| 33 | Ga0207426_1004064 | 3300025302 | Bacteria | 7385 |
| 34 | Ga0207645_10000429 | 3300025907 | Bacteria | 34807 |
| 35 | Ga0207695_10011973 | 3300025913 | Bacteria | 10436 |
| 36 | Ga0207670_10481618 | 3300025936 | Bacteria | 1005 |
| 37 | Ga0207668_10052010 | 3300025972 | Bacteria | 2833 |
| 38 | Ga0207703_10141465 | 3300026035 | Bacteria | 2089 |
| 39 | Ga0207702_10221467 | 3300026078 | Bacteria | 1763 |
| 40 | Ga0207648_10170052 | 3300026089 | Bacteria | 1926 |
| 41 | Ga0207683_10109696 | 3300026121 | Bacteria | 2470 |
| 42 | Ga0265336_10013930 | 3300028666 | Bacteria | 2674 |
| 43 | Ga0265330_10068496 | 3300031235 | Bacteria | 1537 |
| 44 | Ga0265325_10009964 | 3300031241 | Bacteria | 5525 |
| 45 | Ga0265325_10107636 | 3300031241 | Bacteria | 1358 |
| 46 | Ga0307513_10346022 | 3300031456 | Bacteria | 1236 |
| 47 | Ga0316575_10008907 | 3300031665 | Unclassified | 3665 |
| 48 | Ga0316576_10081573 | 3300031727 | Bacteria | 2400 |
| 49 | Ga0316578_10019922 | 3300031728 | Bacteria | 3701 |
| 50 | Ga0316577_10022646 | 3300031733 | Bacteria | 3489 |
| 51 | Ga0307413_10000783 | 3300031824 | Bacteria | 11028 |
| 52 | Ga0307410_10006239 | 3300031852 | Bacteria | 6416 |
| 53 | Ga0307409_100000482 | 3300031995 | Bacteria | 17072 |
| 54 | Ga0307409_100122449 | 3300031995 | Bacteria | 2206 |
| 55 | Ga0307411_10000259 | 3300032005 | Bacteria | 17301 |
| 56 | Ga0307411_10126077 | 3300032005 | Bacteria | 1862 |
| 57 | Ga0307415_100013662 | 3300032126 | Bacteria | 4747 |
| 58 | Ga0316574_0005630 | 3300035398 | Bacteria | 6700 |
| 59 | Ga0316582_0072419 | 3300036647 | Unclassified | 2234 |
| 60 | Ga0316582_0154838 | 3300036647 | Bacteria | 1551 |
| 61 | Ga0316584_0005917 | 3300036712 | Bacteria | 8254 |
| 62 | Ga0316584_0094603 | 3300036712 | Bacteria | 2237 |
| 63 | Ga0400484_08049 | 3300038725 | Bacteria | 1851 |
| 64 | Ga0400488_50688 | 3300038741 | Unclassified | 1102 |
| 65 | Ga0400489_63117 | 3300039093 | Bacteria | 1869 |
| 66 | Ga0400489_80191 | 3300039093 | Bacteria | 2276 |
| 67 | Ga0400487_52723 | 3300039110 | Bacteria | 2462 |
| 68 | Ga0436361_0668755 | 3300039447 | Bacteria | 12274 |
| 69 | Ga0451577_0000262 | 3300042876 | Bacteria | 103912 |
| 70 | Ga0451577_0012470 | 3300042876 | Bacteria | 7981 |
| 71 | Ga0451577_0017148 | 3300042876 | Bacteria | 6694 |
| 72 | Ga0453683_0005785 | 3300044673 | Bacteria | 8563 |
| 73 | Ga0453683_0204352 | 3300044673 | Unclassified | 1254 |
| 74 | Ga0453684_0000236 | 3300044712 | Bacteria | 238892 |
| 75 | Ga0453684_0001313 | 3300044712 | Bacteria | 73484 |
| 76 | Ga0453684_0001401 | 3300044712 | Bacteria | 69706 |
| 77 | Ga0453684_0006130 | 3300044712 | Bacteria | 23152 |
| 78 | Ga0453684_0020156 | 3300044712 | Bacteria | 10088 |
| 79 | Ga0453684_0338584 | 3300044712 | Bacteria | 1699 |
| 80 | Ga0466968_0065967 | 3300044735 | Bacteria | 1567 |
| 81 | Ga0451576_0016687 | 3300045051 | Bacteria | 8100 |
| 82 | Ga0451576_0166527 | 3300045051 | Bacteria | 2300 |
| 83 | Ga0451576_0224608 | 3300045051 | Unclassified | 1961 |
| 84 | Ga0451576_0540759 | 3300045051 | Bacteria | 1224 |
| 85 | Ga0495643_0040726 | 3300046522 | Bacteria | 2536 |
| 86 | Ga0495676_0028501 | 3300047321 | Bacteria | 4766 |
| 87 | Ga0496102_0128215 | 3300048905 | Bacteria | 2373 |
| 88 | Ga0496104_0027292 | 3300048907 | Bacteria | 5283 |
| 89 | Ga0496104_0127659 | 3300048907 | Bacteria | 2442 |
| 90 | Ga0496105_0032662 | 3300048908 | Bacteria | 4272 |
| 91 | Ga0496109_0006088 | 3300048912 | Bacteria | 10134 |
| 92 | Ga0496110_0094652 | 3300048913 | Bacteria | 2675 |
| 93 | Ga0496110_0293575 | 3300048913 | Bacteria | 1481 |
| 94 | Ga0496110_0424948 | 3300048913 | Bacteria | 1211 |
| 95 | Ga0496111_0001107 | 3300048914 | Bacteria | 14927 |
| 96 | Ga0496113_0002035 | 3300048916 | Bacteria | 11612 |
| 97 | Ga0496115_0008930 | 3300048918 | Bacteria | 7433 |
| 98 | Ga0496115_0034315 | 3300048918 | Bacteria | 4010 |
| 99 | Ga0496115_0137147 | 3300048918 | Bacteria | 2017 |
| 100 | Ga0496115_0330498 | 3300048918 | Bacteria | 1245 |
| 101 | Ga0496119_0001143 | 3300048922 | Bacteria | 33302 |
| 102 | Ga0496122_0019376 | 3300048925 | Bacteria | 6219 |
| 103 | Ga0496123_0095966 | 3300048926 | Bacteria | 1742 |
| 104 | Ga0496125_0097306 | 3300048928 | Bacteria | 2181 |
| 105 | Ga0501031_0039900 | 3300049568 | Bacteria | 3065 |
| 106 | Ga0501038_0006985 | 3300049574 | Bacteria | 10425 |
| 107 | Ga0501068_0117472 | 3300049584 | Bacteria | 1657 |
| 108 | Ga0501075_0027079 | 3300049591 | Bacteria | 4224 |
| 109 | Ga0501044_0274874 | 3300049823 | Bacteria | 1619 |
| 110 | nmdc:mga05p37_172871_c1 | 3300050507 | Bacteria | 2634 |
| 111 | nmdc:mga09592_5981_c1 | 3300050508 | Bacteria | 9920 |
| 112 | Ga0500636_0018530 | 3300053177 | Bacteria | 4116 |
| 113 | Ga0501084_0307192 | 3300054114 | Bacteria | 1339 |
| 114 | Ga0501082_0168802 | 3300060353 | Bacteria | 1902 |
| 115 | 2509077883 | 2508501114 | Bacteria | 7082538 |
| 116 | 2596374202 | 2595698237 | Bacteria | 6712432 |
| 117 | 2644734954 | 2643221734 | Bacteria | 5365412 |
| 118 | 2738746108 | 2738541281 | Bacteria | 5112672 |
| 119 | 2739355338 | 2738543032 | Bacteria | 5115625 |
| 120 | 2774872883 | 2773857925 | Bacteria | 6472445 |
| 121 | 2776258745 | 2775506901 | Bacteria | 9631051 |
| 122 | 2819719503 | 2818991467 | Bacteria | 5893227 |
| 123 | 2829747506 | 2829745981 | Bacteria | 5406054 |
| 124 | 2835312928 | 2835312727 | Bacteria | 7413381 |
| 125 | 2841918615 | 2841917233 | Bacteria | 6173500 |
| 126 | 2842700881 | 2842698319 | Bacteria | 5190321 |
| 127 | 2882457961 | 2882456835 | Bacteria | 6863978 |
| 128 | 2884300836 | 2884298095 | Bacteria | 3823049 |
| 129 | 2889311362 | 2889306138 | Bacteria | 6358934 |
| 130 | 2889795436 | 2889790730 | Bacteria | 5689708 |
| 131 | 2889919451 | 2889914905 | Bacteria | 5702301 |
| 132 | 2894242422 | 2894232714 | Bacteria | 8834183 |
| 133 | 2902333006 | 2902330777 | Bacteria | 6395352 |
| 134 | 2902411951 | 2902405164 | Bacteria | 6784948 |
| 135 | 2917704742 | 2917699015 | Bacteria | 7043791 |
| 136 | 2919142807 | 2919138771 | Bacteria | 5281312 |
| 137 | 2928129787 | 2928125067 | Bacteria | 5937560 |
| 138 | Ga0070668_100037640 | |||
| 139 | Ga0055526_1000470 | |||
| 140 | Ga0055526_1000802 | |||
| 141 | Ga0055524_1000020 | |||
| 142 | Ga0070676_10000067 | |||
| 143 | Ga0070660_100018353 | |||
| 144 | Ga0070678_100142979 | |||
| 145 | Ga0070695_100052222 | |||
| 146 | Ga0070717_10000008 | |||
| 147 | Ga0075428_100007274 | |||
| 148 | Ga0075431_100243683 | |||
| 149 | Ga0075429_100005925 | |||
| 150 | Ga0075435_100413319 | |||
| 151 | Ga0105240_10001561 | |||
| 152 | Ga0105240_10101382 | |||
| 153 | Ga0114129_10011805 | |||
| 154 | Ga0105243_10067104 | |||
| 155 | Ga0105243_10181942 | |||
| 156 | Ga0105242_10184387 | |||
| 157 | Ga0105237_10054720 | |||
| 158 | Ga0105237_10180108 | |||
| 159 | Ga0171462_1006 | |||
| 160 | Ga0163163_10001902 | |||
| 161 | Ga0157380_10013201 | |||
| 162 | Ga0209130_1000178 | |||
| 163 | Ga0209675_1001055 | |||
| 164 | Ga0209025_1000008 | |||
| 165 | Ga0209025_1003835 | |||
| 166 | Ga0209564_1000049 | |||
| 167 | Ga0209564_1000065 | |||
| 168 | Ga0209256_1000014 | |||
| 169 | Ga0209256_1000208 | |||
| 170 | Ga0207426_1004064 | |||
| 171 | Ga0207645_10000429 | |||
| 172 | Ga0207695_10011973 | |||
| 173 | Ga0207670_10481618 | |||
| 174 | Ga0207668_10052010 | |||
| 175 | Ga0207703_10141465 | |||
| 176 | Ga0207702_10221467 | |||
| 177 | Ga0207648_10170052 | |||
| 178 | Ga0207683_10109696 | |||
| 179 | Ga0265336_10013930 | |||
| 180 | Ga0265330_10068496 | |||
| 181 | Ga0265325_10009964 | |||
| 182 | Ga0265325_10107636 | |||
| 183 | Ga0307513_10346022 | |||
| 184 | Ga0316575_10008907 | |||
| 185 | Ga0316576_10081573 | |||
| 186 | Ga0316578_10019922 | |||
| 187 | Ga0316577_10022646 | |||
| 188 | Ga0307413_10000783 | |||
| 189 | Ga0307410_10006239 | |||
| 190 | Ga0307409_100000482 | |||
| 191 | Ga0307409_100122449 | |||
| 192 | Ga0307411_10000259 | |||
| 193 | Ga0307411_10126077 | |||
| 194 | Ga0307415_100013662 | |||
| 195 | Ga0316574_0005630 | |||
| 196 | Ga0316582_0072419 | |||
| 197 | Ga0316582_0154838 | |||
| 198 | Ga0316584_0005917 | |||
| 199 | Ga0316584_0094603 | |||
| 200 | Ga0400484_08049 | |||
| 201 | Ga0400488_50688 | |||
| 202 | Ga0400489_63117 | |||
| 203 | Ga0400489_80191 | |||
| 204 | Ga0400487_52723 | |||
| 205 | Ga0436361_0668755 | |||
| 206 | Ga0451577_0000262 | |||
| 207 | Ga0451577_0012470 | |||
| 208 | Ga0451577_0017148 | |||
| 209 | Ga0453683_0005785 | |||
| 210 | Ga0453683_0204352 | |||
| 211 | Ga0453684_0000236 | |||
| 212 | Ga0453684_0001313 | |||
| 213 | Ga0453684_0001401 | |||
| 214 | Ga0453684_0006130 | |||
| 215 | Ga0453684_0020156 | |||
| 216 | Ga0453684_0338584 | |||
| 217 | Ga0466968_0065967 | |||
| 218 | Ga0451576_0016687 | |||
| 219 | Ga0451576_0166527 | |||
| 220 | Ga0451576_0224608 | |||
| 221 | Ga0451576_0540759 | |||
| 222 | Ga0495643_0040726 | |||
| 223 | Ga0495676_0028501 | |||
| 224 | Ga0496102_0128215 | |||
| 225 | Ga0496104_0027292 | |||
| 226 | Ga0496104_0127659 | |||
| 227 | Ga0496105_0032662 | |||
| 228 | Ga0496109_0006088 | |||
| 229 | Ga0496110_0094652 | |||
| 230 | Ga0496110_0293575 | |||
| 231 | Ga0496110_0424948 | |||
| 232 | Ga0496111_0001107 | |||
| 233 | Ga0496113_0002035 | |||
| 234 | Ga0496115_0008930 | |||
| 235 | Ga0496115_0034315 | |||
| 236 | Ga0496115_0137147 | |||
| 237 | Ga0496115_0330498 | |||
| 238 | Ga0496119_0001143 | |||
| 239 | Ga0496122_0019376 | |||
| 240 | Ga0496123_0095966 | |||
| 241 | Ga0496125_0097306 | |||
| 242 | Ga0501031_0039900 | |||
| 243 | Ga0501038_0006985 | |||
| 244 | Ga0501068_0117472 | |||
| 245 | Ga0501075_0027079 | |||
| 246 | Ga0501044_0274874 | |||
| 247 | nmdc:mga05p37_172871_c1 | |||
| 248 | nmdc:mga09592_5981_c1 | |||
| 249 | Ga0500636_0018530 | |||
| 250 | Ga0501084_0307192 | |||
| 251 | Ga0501082_0168802 | |||
| 252 | 2509077883 | |||
| 253 | 2596374202 | |||
| 254 | 2644734954 | |||
| 255 | 2738746108 | |||
| 256 | 2739355338 | |||
| 257 | 2774872883 | |||
| 258 | 2776258745 | |||
| 259 | 2819719503 | |||
| 260 | 2829747506 | |||
| 261 | 2835312928 | |||
| 262 | 2841918615 | |||
| 263 | 2842700881 | |||
| 264 | 2882457961 | |||
| 265 | 2884300836 | |||
| 266 | 2889311362 | |||
| 267 | 2889795436 | |||
| 268 | 2889919451 | |||
| 269 | 2894242422 | |||
| 270 | 2902333006 | |||
| 271 | 2902411951 | |||
| 272 | 2917704742 | |||
| 273 | 2919142807 | |||
| 274 | 2928129787 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1wg8-assembly2.cif.gz_B | crystal structure of a predicted s-adenosylmethionine-dependent methyltransferase tt1512 from thermus thermophilus hb8. | 0.9659 | 18 | 320 |
| 1wg8-assembly2.cif.gz_B | crystal structure of a predicted s-adenosylmethionine-dependent methyltransferase tt1512 from thermus thermophilus hb8. | 0.9558 | 18 | 320 |
| 1n2x-assembly1.cif.gz_A | crystal structure analysis of tm0872, a putative sam-dependent methyltransferase, complexed with sam | 0.9361 | 18 | 319 |
| 3tka-assembly1.cif.gz_A-2 | crystal structure and solution saxs of methyltransferase rsmh from e.coli | 0.9341 | 20 | 322 |
| 3tka-assembly1.cif.gz_A-2 | crystal structure and solution saxs of methyltransferase rsmh from e.coli | 0.9309 | 20 | 322 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1wg8B02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative methyltransferase TM0872, insert domain | 0.964 | 125 | 224 | 1.10.150.170 |
| 3tkaA02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative methyltransferase TM0872, insert domain | 0.9574 | 124 | 224 | 1.10.150.170 |
| af_Q9VGY5_27_186_3.40.50.150 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.9474 | 18 | 170 | 3.40.50.150 |
| 1wg8B01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 | 0.9437 | 18 | 320 | 3.40.50.150 |
| 3tkaA02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Putative methyltransferase TM0872, insert domain | 0.9386 | 124 | 224 | 1.10.150.170 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A653UXH1-F1-model_v4 | Ribosomal RNA small subunit methyltransferase H (EC 2.1.1.199) (16S rRNA m(4)C1402 methyltransferase) (rRNA (cytosine-N(4)-)-methyltransferase RsmH) | 0.9923 | 18 | 346 |
GO:0005737
GO:0070475 GO:0071424 |
| AF-A0A2M7GL37-F1-model_v4 | Ribosomal RNA small subunit methyltransferase H (EC 2.1.1.199) (16S rRNA m(4)C1402 methyltransferase) (rRNA (cytosine-N(4)-)-methyltransferase RsmH) | 0.9786 | 18 | 331 |
GO:0005737
GO:0070475 GO:0071424 |
| AF-A0A849N7M2-F1-model_v4 | Ribosomal RNA small subunit methyltransferase H (EC 2.1.1.199) (16S rRNA m(4)C1402 methyltransferase) (rRNA (cytosine-N(4)-)-methyltransferase RsmH) | 0.9782 | 22 | 320 |
GO:0005737
GO:0070475 GO:0071424 |
| AF-A0A2E6PA63-F1-model_v4 | Ribosomal RNA small subunit methyltransferase H (EC 2.1.1.199) (16S rRNA m(4)C1402 methyltransferase) (rRNA (cytosine-N(4)-)-methyltransferase RsmH) | 0.9781 | 22 | 322 |
GO:0005737
GO:0070475 GO:0071424 |
| AF-A0A2W4Z2A8-F1-model_v4 | 16S rRNA (Cytosine(1402)-N(4))-methyltransferase | 0.9766 | 18 | 263 |
GO:0005737
GO:0070475 GO:0071424 |