Scaffold Information

Sample ID 3300005367
Scaffold Ga0070667_100000008
Sample Name Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG
Length 285591
Fam Num 42
Taxonomy Bacteria
Environment Rhizosphere
Lineage Bacteria;Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas putida

CRISPR Details

Start Coordinate: 197666 End Coordinate: 201586
Position Repeat Spacer
197666 GCTTCAATGAAGCCGCGGCTTTCGCCGCGGAAGACT TGACTAGGCGGTCTTTGATCGTGCGCACCTGAAT
197736 CCTTCAATGAGGCCGCGGCGTTTCACCGCGGAAGAC CTCGCGCAACCGGCTCGCAAAGAGCGGCGAATCCAA
197808 GCTTCAATGAGGCCGCAGCATTGCACCGCGGAAGAC AGGTTGACATAGTCTGTCAATCGGGTTTGTACTTATG
197881 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGTCAGTAGATTCTCGCGAACGATGCTCGGTTTTGAG
197954 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TAGGCGCAGCAGGACGCGCCGGGGCGTGCAATAGGT
198026 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GAGCATCCTGGGTGAAGTGCTCGGCGAACACCTGCCT
198099 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GATCAACATCAAGGATCTCAACCCCAAAGATGTGGT
198171 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGCATCGCTACGACTATGCCATGTGCGAGGCGTGCC
198243 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CACAGATGGAGTGAACGCGAGTGCAATGGTGAGATC
198315 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTGCAATCGCCACCACCACGTCCGCATTCCAACGGTA
198388 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TTAAAGCGTTTGCAAAACTTTATGCAGGCATCTTTG
198460 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGAAGTGGGCCGTATCAATCTCTTACCGAACCCTGAT
198533 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GGTAGTCGGCAAGAAGTCCCGCACGGCCGGTCTTTA
198605 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGTGTCTCGAATAAAGTCCTATCCTATTACTTGTC
198676 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCCGCGAGGCGCTATTCGAGGGTACGCGCGGGAACG
198748 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GACACGATCCGGGCGAATAACGATACCCTGTCGGC
198819 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC AAGAAATACTTGACCCCATTTCTGCCCTGTACCATC
198891 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCGAGGGGATATCTCGGAGCCGGGAGAAGACCTACT
198963 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GAGGCGGCGGGCTTAGAGATCGTCTCCTACCAGGG
199034 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GACATCATATGGCGAGACGGGCGGCGGAACCGTATG
199106 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTAATAAGAAGCTAAACTTAACCGGAGAACGCTTCGG
199179 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TGTTATGCGCGATCTTGGCGCTAGGCGCGCAGCATA
199251 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TTGTTCTGACTGATCGCGAACTTCTTGCGGGAAGT
199322 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTGGACTCCCTACCCGGGATGGACTACCATAAAG
199392 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GGCGGGTGCGCTTCAAAGTGCCCGTACCGGACCCCGA
199465 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CCGCCAGAGTCTGGCATTCAGCCCGTTAAGGTGCTGAA
199539 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGGTCGCGGTCGGAACGGGCATCGCCGTTGAGATCAG
199612 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CAAATAGGTGCGATTGAAGTCCCGGGCTGCTTGTGCG
199685 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCCGAGTGGGCGCAGAACCTGCATGACCTCCTGCACA
199758 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGCTCGAGCTGCCCTGATCGCCATTCTCGATCCCAT
199830 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CCGGTTGTCCCAGCGGGGGCGGTAACGTTTGTCCCA
199902 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC ATCGCCCTGTAAAAACACGGGCAAGAGCGACGGCA
199973 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TGCGGCGCAGGTGGCTGCTAAATATGTGATCGACCA
200045 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GAGCTATGTGGACACCAGCCGCTTTACGCTGCGGGA
200117 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTTCGCCGCGTCGTCGAAATTGCTGGTCGCCGTGAC
200189 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTGCTGCGCGACGCCGAGGATGTCGCCCAGGAGAA
200260 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC ATAACCCGTCGATTCTCTCAGACGCTGGTGCTACA
200331 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CCGGAACGGCAGCGGCTTGTGAATGATCTGAATCAG
200403 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCTATGCGCGATCATTCCCCAAGGCTGAATGGCAG
200474 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TACAACTGCCATGGCTATTTCGACCGGCCGGGCGCG
200546 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC AGGCGACGCCCACCATCCACTGGCAGTCCCCGACCCT
200619 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GCGCTGACCATTCACTCTGTTCCGATCTTTAAGCT
200690 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGAAACCGGACATAGCCGTGTTCCGGCGCTTAGCGCT
200763 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CTGATTTAACCGAGCCGTGGATTCCACGGTTCAATTCT
200837 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCTCCGCCGCTCTTCAAGACGCAGCAGATCGTCTTC
200909 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCCTTGTCCCAAATCTCGTGGATCTTGCAGGTCTT
200980 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GATGACCTGCAGCAGGCCATTGCCGCCGCTCAAG
201050 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TTATTAGCCTCGTGGTGGATTGGGCGAGAGGGGA
201120 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CACTTGCGTGACCGGCGGATTCACCGTGTCATCAT
201191 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CGGTCAGGCGTGGCAGAAAGAGCGCGAGAAAGTG
201261 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC ACTAATGGATGAGAAATGCGGATATATGCTACAGT
201332 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC CCGGGCTCCGGGTGGGGGATGTCCACGAACTTGGGGTT
201406 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC TCTGCACGTCCGCTCGGGAGCCCGGCAGAGCATCATC
201479 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC GCGCCGATGTTGAACGCGCCCTGCACCGGATCGAG
201550 GCTTCAATGAGGCCGCGGCATTTCGCCACGGAAGAC -

PFAM Info

PFAM Domain Meaning GOTerms

Scaffold Families

F273931 , F319169 , F351007 , F359702 , F391881 , F392446 , F404207 , F415158 , F415622 , F417822 , F425363 , F427712 , F457201 , F457202 , F457580 , F458195 , F458908 , F462242 , F462961 , F471601 , F473485 , F474097 , F477747 , F477895 , F478902 , F479570 , F482520 , F483126 , F484606 , F491107 , F491641 , F492526 , F494347 , F494643 , F495159 , F495322 , F495740 , F495805 , F496726 , F496827 , F496920 , F497392