F418546

General Info

Members Datasets Scaffolds Average Seq Length
351 210 702 298

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10125633|Ga0070681_101256332
Length 332
Sequence MRRPPAPPNKESWLWSGIRGKGAXXXDSRKAKLMAMDWDKLRVFHAVAEAGSFTHAGEALNLSQSAVSRQISALEESLSVPLFHRHARGLILTEQGELLFRTAREVFAKLAMSESLISESKDRPKGPLKITTTVAFGSIWLTPRIREFTDLYPEIQVSLVVDDSELDLSMREADVAIRMSPPRQPDLIQRHLVTVQVHIYGAPDYIKKHGAPQRPEELDEHKLIAYGEDARPPVPGVNWLVEAGAKPGRDRRPILTVNNTYGILRAVNSGLGLAALPDFVAAEHTDLIRVLPEISGPPNEAYFVYPEELRSSKRISVFRDFLLRKVAEGRLT

Samples

Sample ID Description Type Environment
1 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
2 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
6 3300003544 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
7 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
19 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
20 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
21 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
36 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
40 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
41 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
42 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
46 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
62 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
63 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
64 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
65 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
73 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
94 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
96 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
97 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
98 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
99 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
100 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
101 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
102 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
103 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
104 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
105 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
106 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
107 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
108 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
109 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
110 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
111 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
112 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
113 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
114 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
115 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
116 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
117 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
118 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
119 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
120 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
121 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
122 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
123 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
124 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
125 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
126 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
127 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
128 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
129 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
130 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
131 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
132 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
133 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
134 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
135 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
136 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
137 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
138 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
139 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
140 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
141 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
142 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
143 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
144 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
145 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
146 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
147 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
148 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
149 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
150 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
151 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
152 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
153 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
154 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
161 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
164 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
165 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
166 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
167 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
168 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
169 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
170 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
171 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
172 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
173 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
176 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
177 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
178 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
179 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
180 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
181 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
182 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
183 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
184 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
185 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
186 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
187 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
188 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
189 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
190 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
191 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
192 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
193 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
194 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
195 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
196 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
197 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
198 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
199 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
200 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
201 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
202 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
203 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
204 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
205 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
206 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
207 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
208 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
209 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
210 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.88
Metatranscriptomes 0.85
Isolates 6.27

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.84
Nodule 0.28
Rhizoplane 1.42
Rhizosphere 81.2
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070681_10125633 3300005458 Bacteria 2498
2 Ga0006759J45824_1128925 3300003163 Bacteria 1039
3 JGI25151J46595_10000940 3300003187 Bacteria 22523
4 JGI25406J46586_10000611 3300003203 Bacteria 16740
5 JGI25407J50210_10038727 3300003373 Bacteria 1223
6 Ga0007417J51691_1076690 3300003544 Bacteria 1204
7 Ga0007410J51695_1062815 3300003574 Bacteria 1035
8 Ga0055531_10031770 3300003794 Bacteria 1740
9 Ga0065712_10166659 3300005290 Bacteria 1269
10 Ga0070680_100083654 3300005336 Bacteria 2635
11 Ga0070668_100128994 3300005347 Bacteria 2028
12 Ga0070669_100035442 3300005353 Bacteria 3615
13 Ga0070675_100319133 3300005354 Bacteria 1372
14 Ga0070671_100068135 3300005355 Bacteria 2968
15 Ga0070709_10047424 3300005434 Bacteria 2676
16 Ga0070714_100032982 3300005435 Bacteria 4326
17 Ga0070713_100003311 3300005436 Bacteria 10627
18 Ga0070713_100040767 3300005436 Bacteria 3777
19 Ga0070710_10007307 3300005437 Bacteria 5343
20 Ga0070710_10019538 3300005437 Bacteria 3502
21 Ga0070711_100085515 3300005439 Bacteria 2259
22 Ga0070711_100124127 3300005439 Bacteria 1914
23 Ga0070694_100153843 3300005444 Bacteria 1682
24 Ga0070708_100410531 3300005445 Bacteria 1277
25 Ga0070681_10000992 3300005458 Bacteria 24023
26 Ga0070681_10043646 3300005458 Bacteria 4490
27 Ga0070681_10280321 3300005458 Bacteria 1577
28 Ga0070681_10460087 3300005458 Bacteria 1185
29 Ga0070706_100058290 3300005467 Bacteria 3564
30 Ga0070706_100114551 3300005467 Bacteria 2511
31 Ga0070707_100053612 3300005468 Bacteria 3866
32 Ga0070698_100067370 3300005471 Bacteria 3600
33 Ga0070699_100022719 3300005518 Bacteria 5406
34 Ga0070699_100316547 3300005518 Bacteria 1402
35 Ga0070679_100001558 3300005530 Bacteria 20513
36 Ga0070679_100210254 3300005530 Bacteria 1909
37 Ga0070679_100393416 3300005530 Bacteria 1332
38 Ga0070684_100059521 3300005535 Bacteria 3340
39 Ga0070697_100103742 3300005536 Bacteria 2364
40 Ga0070697_100184832 3300005536 Bacteria 1768
41 Ga0070695_100058196 3300005545 Bacteria 2498
42 Ga0070696_100183134 3300005546 Bacteria 1555
43 Ga0070693_100123107 3300005547 Bacteria 1611
44 Ga0070704_100015669 3300005549 Bacteria 4769
45 Ga0068855_100221201 3300005563 Bacteria 2123
46 Ga0081455_10151842 3300005937 Bacteria 1785
47 Ga0081455_10170878 3300005937 Bacteria 1656
48 Ga0081538_10005636 3300005981 Bacteria 11233
49 Ga0081540_1005532 3300005983 Bacteria 9412
50 Ga0081540_1016371 3300005983 Bacteria 4643
51 Ga0081540_1025720 3300005983 Bacteria 3380
52 Ga0081539_10000072 3300005985 Bacteria 232726
53 Ga0081539_10013208 3300005985 Bacteria 6247
54 Ga0070717_10000755 3300006028 Bacteria 21129
55 Ga0070717_10034964 3300006028 Bacteria 4064
56 Ga0070716_100018297 3300006173 Bacteria 3648
57 Ga0070716_100083611 3300006173 Bacteria 1912
58 Ga0070712_100209119 3300006175 Bacteria 1538
59 Ga0075362_10025051 3300006177 Bacteria 2535
60 Ga0075369_10067085 3300006186 Bacteria 1575
61 Ga0075431_100018918 3300006847 Bacteria 7016
62 Ga0075434_100310354 3300006871 Bacteria 1598
63 Ga0075436_100100661 3300006914 Bacteria 2013
64 Ga0099795_10008472 3300007788 Bacteria 2934
65 Ga0099795_10008746 3300007788 Bacteria 2905
66 Ga0105240_10185608 3300009093 Bacteria 2450
67 Ga0105240_10439442 3300009093 Bacteria 1462
68 Ga0111539_10014516 3300009094 Bacteria 9836
69 Ga0111539_10148376 3300009094 Bacteria 2745
70 Ga0114129_10022549 3300009147 Bacteria 8933
71 Ga0114129_10061817 3300009147 Bacteria 5234
72 Ga0114129_10231560 3300009147 Bacteria 2488
73 Ga0114129_10494173 3300009147 Bacteria 1599
74 Ga0105237_10031248 3300009545 Bacteria 5401
75 Ga0105238_10035540 3300009551 Bacteria 5065
76 Ga0099796_10012862 3300010159 Bacteria 2376
77 Ga0099796_10026771 3300010159 Bacteria 1835
78 Ga0099796_10071587 3300010159 Bacteria 1253
79 Ga0105239_10475058 3300010375 Bacteria 1420
80 Ga0157370_10026641 3300013104 Bacteria 5706
81 Ga0157370_10220277 3300013104 Bacteria 1758
82 Ga0157369_10004115 3300013105 Bacteria 17222
83 Ga0163162_10502818 3300013306 Bacteria 1342
84 Ga0163163_10643340 3300014325 Bacteria 1124
85 Ga0182008_10003640 3300014497 Bacteria 9200
86 Ga0157379_10126719 3300014968 Bacteria 2297
87 Ga0157376_10200466 3300014969 Bacteria 1836
88 Ga0213872_10043518 3300021361 Bacteria 2046
89 Ga0213872_10081676 3300021361 Bacteria 1452
90 Ga0213876_10128778 3300021384 Bacteria 1345
91 Ga0213876_10231692 3300021384 Bacteria 982
92 Ga0213875_10000353 3300021388 Bacteria 43018
93 Ga0213875_10001607 3300021388 Bacteria 14297
94 Ga0213875_10004130 3300021388 Bacteria 8045
95 Ga0213875_10018047 3300021388 Bacteria 3404
96 Ga0213871_10011536 3300021441 Bacteria 2032
97 Ga0209148_1000555 3300025254 Bacteria 35360
98 Ga0209455_1000388 3300025272 Bacteria 38902
99 Ga0209130_1003347 3300025284 Bacteria 6893
100 Ga0209675_1001095 3300025291 Bacteria 16645
101 Ga0209676_1000026 3300025292 Bacteria 574599
102 Ga0209025_1000576 3300025294 Bacteria 66598
103 Ga0209050_1012877 3300025298 Bacteria 3784
104 Ga0207426_1001035 3300025302 Bacteria 26507
105 Ga0207692_10001791 3300025898 Bacteria 8146
106 Ga0207692_10182620 3300025898 Bacteria 1223
107 Ga0207688_10134519 3300025901 Bacteria 1451
108 Ga0207699_10017328 3300025906 Bacteria 3787
109 Ga0207699_10071655 3300025906 Bacteria 2120
110 Ga0207699_10148626 3300025906 Bacteria 1548
111 Ga0207684_10161567 3300025910 Bacteria 1929
112 Ga0207684_10203394 3300025910 Bacteria 1708
113 Ga0207707_10009536 3300025912 Bacteria 8421
114 Ga0207707_10051161 3300025912 Bacteria 3598
115 Ga0207707_10071386 3300025912 Bacteria 3026
116 Ga0207707_10073466 3300025912 Bacteria 2982
117 Ga0207707_10094104 3300025912 Bacteria 2618
118 Ga0207707_10188773 3300025912 Bacteria 1798
119 Ga0207707_10352705 3300025912 Bacteria 1267
120 Ga0207693_10002561 3300025915 Bacteria 15808
121 Ga0207693_10019754 3300025915 Bacteria 5356
122 Ga0207693_10051091 3300025915 Bacteria 3246
123 Ga0207693_10288985 3300025915 Bacteria 1285
124 Ga0207663_10253750 3300025916 Bacteria 1296
125 Ga0207663_10291017 3300025916 Bacteria 1217
126 Ga0207660_10023679 3300025917 Bacteria 4150
127 Ga0207660_10202642 3300025917 Bacteria 1550
128 Ga0207652_10124542 3300025921 Bacteria 2295
129 Ga0207652_10222667 3300025921 Bacteria 1700
130 Ga0207652_10453735 3300025921 Bacteria 1155
131 Ga0207646_10108060 3300025922 Bacteria 2496
132 Ga0207694_10125779 3300025924 Bacteria 2051
133 Ga0207650_10413331 3300025925 Bacteria 1118
134 Ga0207700_10001661 3300025928 Bacteria 12630
135 Ga0207700_10120028 3300025928 Bacteria 2130
136 Ga0207664_10000823 3300025929 Bacteria 21042
137 Ga0207664_10072196 3300025929 Bacteria 2782
138 Ga0207664_10246115 3300025929 Bacteria 1559
139 Ga0207664_10376862 3300025929 Bacteria 1259
140 Ga0207644_10071933 3300025931 Bacteria 2531
141 Ga0207644_10105164 3300025931 Bacteria 2126
142 Ga0207665_10058310 3300025939 Bacteria 2610
143 Ga0207665_10107139 3300025939 Bacteria 1959
144 Ga0207712_10214891 3300025961 Bacteria 1534
145 Ga0207703_10148637 3300026035 Bacteria 2041
146 Ga0207675_100014244 3300026118 Bacteria 7412
147 Ga0209179_1006822 3300027512 Bacteria 1859
148 Ga0207428_10000096 3300027907 Bacteria 123081
149 Ga0268265_10167650 3300028380 Bacteria 1873
150 Ga0265338_10085950 3300028800 Bacteria 2620
151 Ga0265338_10245778 3300028800 Bacteria 1323
152 Ga0265328_10017513 3300031239 Bacteria 2774
153 Ga0265320_10007817 3300031240 Bacteria 6604
154 Ga0265329_10064619 3300031242 Bacteria 1158
155 Ga0265331_10000019 3300031250 Bacteria 258837
156 Ga0265331_10005303 3300031250 Bacteria 7801
157 Ga0265331_10007377 3300031250 Bacteria 6368
158 Ga0265327_10000100 3300031251 Bacteria 189591
159 Ga0265327_10000424 3300031251 Bacteria 77145
160 Ga0265327_10007923 3300031251 Bacteria 8046
161 Ga0265313_10001203 3300031595 Bacteria 24706
162 Ga0265313_10003796 3300031595 Bacteria 11975
163 Ga0265313_10006780 3300031595 Bacteria 8010
164 Ga0307508_10075576 3300031616 Bacteria 2946
165 Ga0265314_10006032 3300031711 Bacteria 10794
166 Ga0265342_10013245 3300031712 Bacteria 5545
167 Ga0307516_10172293 3300031730 Bacteria 1904
168 Ga0307413_10271719 3300031824 Bacteria 1269
169 Ga0307410_10067736 3300031852 Bacteria 2463
170 Ga0307406_10232695 3300031901 Bacteria 1377
171 Ga0307407_10053908 3300031903 Bacteria 2316
172 Ga0307407_10220451 3300031903 Bacteria 1282
173 Ga0307407_10324743 3300031903 Bacteria 1081
174 Ga0307409_100010825 3300031995 Bacteria 5705
175 Ga0307409_100046758 3300031995 Bacteria 3279
176 Ga0307409_100421800 3300031995 Bacteria 1280
177 Ga0307414_10011115 3300032004 Bacteria 5265
178 Ga0373926_0042061 3300035083 Bacteria 1634
179 Ga0373932_0011052 3300035112 Bacteria 2198
180 Ga0373936_0086021 3300035113 Bacteria 1313
181 Ga0373953_0126942 3300035117 Bacteria 1086
182 Ga0373953_0130417 3300035117 Bacteria 1072
183 Ga0373954_0107561 3300035118 Bacteria 1348
184 Ga0373957_0017880 3300035120 Bacteria 2476
185 Ga0373943_0061499 3300035170 Bacteria 1878
186 Ga0373946_0026809 3300035171 Bacteria 2276
187 Ga0373946_0049479 3300035171 Bacteria 1753
188 Ga0373955_0245405 3300035172 Bacteria 1073
189 Ga0373942_0025430 3300035207 Bacteria 1526
190 Ga0373961_0038445 3300035241 Bacteria 1371
191 Ga0373931_0037673 3300035691 Bacteria 2525
192 Ga0373935_0247366 3300035692 Bacteria 1247
193 Ga0373927_0021711 3300035695 Bacteria 4207
194 Ga0373927_0047026 3300035695 Bacteria 2791
195 Ga0373933_0015531 3300035724 Bacteria 4246
196 Ga0373947_0121461 3300035725 Bacteria 1660
197 Ga0373937_0014970 3300036401 Bacteria 6852
198 Ga0373937_0021471 3300036401 Bacteria 5794
199 Ga0373937_0275489 3300036401 Bacteria 1588
200 Ga0373925_0043527 3300037068 Bacteria 3333
201 Ga0373925_0184999 3300037068 Bacteria 1651
202 Ga0373925_0205323 3300037068 Bacteria 1568
203 Ga0395900_0074697 3300037418 Bacteria 3485
204 Ga0395900_0308091 3300037418 Bacteria 1568
205 Ga0395898_0184779 3300037466 Bacteria 1992
206 Ga0395898_0280771 3300037466 Bacteria 1589
207 Ga0395898_0447321 3300037466 Bacteria 1231
208 Ga0395905_0096665 3300037471 Bacteria 2773
209 Ga0436364_0056643 3300037853 Bacteria 1601
210 Ga0436364_0080149 3300037853 Bacteria 57380
211 Ga0436364_0470773 3300037853 Bacteria 2562
212 Ga0436364_0490227 3300037853 Bacteria 1812
213 Ga0436364_0537565 3300037853 Bacteria 4128
214 Ga0436364_1050354 3300037853 Bacteria 3848
215 Ga0436364_1505086 3300037853 Bacteria 23518
216 Ga0436364_1516895 3300037853 Bacteria 20680
217 Ga0436364_1525673 3300037853 Bacteria 28219
218 Ga0436365_0123950 3300039437 Bacteria 1350
219 Ga0436365_0211525 3300039437 Bacteria 3599
220 Ga0436365_0730963 3300039437 Bacteria 1413
221 Ga0436365_1204748 3300039437 Bacteria 3086
222 Ga0436365_1372182 3300039437 Bacteria 2208
223 Ga0436365_1422184 3300039437 Bacteria 1270
224 Ga0436365_1869412 3300039437 Bacteria 2076
225 Ga0436360_0154979 3300039438 Bacteria 1904
226 Ga0436360_0299947 3300039438 Bacteria 1344
227 Ga0436360_0377623 3300039438 Bacteria 3310
228 Ga0436360_0683640 3300039438 Bacteria 7267
229 Ga0436360_0762993 3300039438 Bacteria 4871
230 Ga0436360_0805231 3300039438 Bacteria 3334
231 Ga0436360_0905364 3300039438 Bacteria 2610
232 Ga0436360_0940377 3300039438 Bacteria 1279
233 Ga0436360_1182115 3300039438 Bacteria 7344
234 Ga0436361_0618915 3300039447 Bacteria 1106
235 Ga0436361_0692564 3300039447 Bacteria 2198
236 Ga0436361_1041762 3300039447 Bacteria 2182
237 Ga0436363_0411506 3300039450 Bacteria 1321
238 Ga0436363_0653676 3300039450 Bacteria 6386
239 Ga0436363_0670854 3300039450 Bacteria 2354
240 Ga0436362_0142555 3300039453 Bacteria 2444
241 Ga0436362_0840094 3300039453 Bacteria 1545
242 Ga0436362_1137549 3300039453 Bacteria 3379
243 Ga0436362_1178085 3300039453 Bacteria 2117
244 Ga0451577_0223973 3300042876 Bacteria 1700
245 Ga0451577_0598366 3300042876 Bacteria 1001
246 Ga0453683_0029390 3300044673 Bacteria 3475
247 Ga0453684_0000048 3300044712 Bacteria 559743
248 Ga0453684_0000077 3300044712 Bacteria 435536
249 Ga0453684_0004682 3300044712 Bacteria 28347
250 Ga0453684_0023051 3300044712 Bacteria 9198
251 Ga0451576_0000056 3300045051 Bacteria 303398
252 Ga0451576_0000301 3300045051 Bacteria 119546
253 Ga0451576_0033389 3300045051 Bacteria 5470
254 Ga0451576_0303368 3300045051 Bacteria 1670
255 Ga0451576_0578983 3300045051 Bacteria 1180
256 Ga0495640_0085159 3300046533 Bacteria 2095
257 Ga0495667_0062309 3300046559 Bacteria 2444
258 Ga0495634_0149481 3300046642 Bacteria 1478
259 Ga0495657_0207253 3300046675 Bacteria 1193
260 Ga0495599_0074855 3300046678 Bacteria 2114
261 Ga0495680_0264361 3300047322 Bacteria 1216
262 Ga0496103_0087886 3300048906 Bacteria 1960
263 Ga0496106_0016041 3300048909 Bacteria 5539
264 Ga0496107_0074784 3300048910 Bacteria 2465
265 Ga0496110_0071391 3300048913 Bacteria 3079
266 Ga0496113_0011214 3300048916 Bacteria 5968
267 Ga0501032_0000280 3300049569 Bacteria 43114
268 Ga0501034_0000001 3300049571 Bacteria 2184493
269 Ga0501034_0153730 3300049571 Bacteria 2276
270 Ga0501034_0245050 3300049571 Bacteria 1737
271 Ga0501034_0337340 3300049571 Bacteria 1438
272 Ga0501036_0005647 3300049572 Bacteria 10148
273 Ga0501036_0119478 3300049572 Bacteria 2226
274 Ga0501036_0385135 3300049572 Bacteria 1170
275 Ga0501037_0087158 3300049573 Bacteria 2259
276 Ga0501038_0000019 3300049574 Bacteria 154763
277 Ga0501039_0000194 3300049575 Bacteria 43823
278 Ga0501039_0132944 3300049575 Bacteria 1953
279 Ga0501041_0041089 3300049577 Bacteria 2808
280 Ga0501042_0055820 3300049578 Bacteria 2819
281 Ga0501047_0011921 3300049581 Bacteria 8228
282 Ga0501047_0155065 3300049581 Bacteria 2164
283 Ga0501047_0193853 3300049581 Bacteria 1895
284 Ga0501047_0221755 3300049581 Bacteria 1747
285 Ga0501068_0076382 3300049584 Bacteria 2050
286 Ga0501069_0057390 3300049585 Bacteria 2170
287 Ga0501069_0180431 3300049585 Bacteria 1220
288 Ga0501070_0072744 3300049586 Bacteria 2846
289 Ga0501072_0070113 3300049588 Bacteria 2768
290 Ga0501073_0017643 3300049589 Bacteria 5167
291 Ga0501073_0290720 3300049589 Bacteria 1128
292 Ga0501074_0077357 3300049590 Bacteria 2388
293 Ga0501074_0191538 3300049590 Bacteria 1458
294 Ga0501077_0057577 3300049593 Bacteria 2468
295 Ga0501077_0147563 3300049593 Bacteria 1492
296 Ga0501079_0052150 3300049741 Bacteria 3158
297 Ga0501080_0171115 3300049742 Bacteria 2003
298 Ga0501080_0438070 3300049742 Bacteria 1173
299 Ga0501080_0501431 3300049742 Bacteria 1085
300 Ga0501081_0023109 3300049743 Bacteria 4166
301 Ga0501083_0002726 3300049744 Bacteria 12200
302 Ga0501044_0172633 3300049823 Bacteria 2132
303 Ga0501044_0197303 3300049823 Bacteria 1972
304 Ga0501044_0214909 3300049823 Bacteria 1876
305 Ga0501044_0255939 3300049823 Bacteria 1690
306 Ga0501045_0414669 3300049824 Bacteria 1002
307 nmdc:mga03683_30893_c1 3300050489 Bacteria 2145
308 nmdc:mga05p37_109793_c1 3300050507 Bacteria 3393
309 nmdc:mga05p37_121161_c1 3300050507 Bacteria 3213
310 nmdc:mga05p37_162370_c1 3300050507 Bacteria 2728
311 nmdc:mga05p37_25550_c1 3300050507 Bacteria 7184
312 nmdc:mga0qj67_129106_c1 3300050509 Bacteria 2046
313 nmdc:mga0qj67_58991_c1 3300050509 Bacteria 3043
314 nmdc:mga06r32_5580_c1 3300050510 Bacteria 11326
315 nmdc:mga08y16_128648_c1 3300050511 Bacteria 2634
316 nmdc:mga08y16_568_c1 3300050511 Bacteria 34301
317 Ga0495601_0023196 3300053077 Bacteria 3812
318 Ga0495601_0173104 3300053077 Bacteria 1411
319 Ga0495619_0001439 3300053085 Bacteria 15654
320 Ga0495619_0006830 3300053085 Bacteria 7214
321 Ga0500578_0039173 3300053086 Bacteria 3044
322 Ga0500642_0001360 3300053130 Bacteria 6994
323 Ga0500559_0038490 3300053136 Bacteria 2077
324 Ga0500588_0000186 3300053146 Bacteria 8594
325 Ga0501084_0453220 3300054114 Bacteria 1084
326 Ga0590075_013503 3300059424 Bacteria 1993
327 Ga0590077_004837 3300059426 Bacteria 2755
328 Ga0501082_0012550 3300060353 Bacteria 7280
329 Ga0501082_0170826 3300060353 Bacteria 1890
330 2512034502 2511231221 Bacteria 6846400
331 2523105372 2522572158 Bacteria 6514390
332 2524610599 2524023250 Bacteria 5457705
333 2599103924 2597490356 Bacteria 7030811
334 2842338278 2842333319 Bacteria 8899485
335 2842775784 2842775625 Bacteria 5587290
336 2844534288 2844533157 Bacteria 7517899
337 2846955059 2846952575 Bacteria 6587527
338 2846957613 2846952575 Bacteria 6587527
339 2848858648 2848858292 Bacteria 7391279
340 2848863751 2848858292 Bacteria 7391279
341 2883292904 2883291878 Bacteria 5894118
342 2883355876 2883354860 Bacteria 5865246
343 2883579457 2883577096 Bacteria 4709178
344 2894773516 2894772417 Bacteria 5305674
345 2897807133 2897803580 Bacteria 7000062
346 2909401298 2909399089 Bacteria 3922598
347 2929204677 2929199973 Bacteria 7260745
348 641337109 641228493 Bacteria 3999591
349 643392715 643348555 Bacteria 3914947
350 8054003962 8054002106 Bacteria 7987183
351 8055913528 8055909800 Bacteria 7278581
352 Ga0070681_10125633
353 Ga0006759J45824_1128925
354 JGI25151J46595_10000940
355 JGI25406J46586_10000611
356 JGI25407J50210_10038727
357 Ga0007417J51691_1076690
358 Ga0007410J51695_1062815
359 Ga0055531_10031770
360 Ga0065712_10166659
361 Ga0070680_100083654
362 Ga0070668_100128994
363 Ga0070669_100035442
364 Ga0070675_100319133
365 Ga0070671_100068135
366 Ga0070709_10047424
367 Ga0070714_100032982
368 Ga0070713_100003311
369 Ga0070713_100040767
370 Ga0070710_10007307
371 Ga0070710_10019538
372 Ga0070711_100085515
373 Ga0070711_100124127
374 Ga0070694_100153843
375 Ga0070708_100410531
376 Ga0070681_10000992
377 Ga0070681_10043646
378 Ga0070681_10280321
379 Ga0070681_10460087
380 Ga0070706_100058290
381 Ga0070706_100114551
382 Ga0070707_100053612
383 Ga0070698_100067370
384 Ga0070699_100022719
385 Ga0070699_100316547
386 Ga0070679_100001558
387 Ga0070679_100210254
388 Ga0070679_100393416
389 Ga0070684_100059521
390 Ga0070697_100103742
391 Ga0070697_100184832
392 Ga0070695_100058196
393 Ga0070696_100183134
394 Ga0070693_100123107
395 Ga0070704_100015669
396 Ga0068855_100221201
397 Ga0081455_10151842
398 Ga0081455_10170878
399 Ga0081538_10005636
400 Ga0081540_1005532
401 Ga0081540_1016371
402 Ga0081540_1025720
403 Ga0081539_10000072
404 Ga0081539_10013208
405 Ga0070717_10000755
406 Ga0070717_10034964
407 Ga0070716_100018297
408 Ga0070716_100083611
409 Ga0070712_100209119
410 Ga0075362_10025051
411 Ga0075369_10067085
412 Ga0075431_100018918
413 Ga0075434_100310354
414 Ga0075436_100100661
415 Ga0099795_10008472
416 Ga0099795_10008746
417 Ga0105240_10185608
418 Ga0105240_10439442
419 Ga0111539_10014516
420 Ga0111539_10148376
421 Ga0114129_10022549
422 Ga0114129_10061817
423 Ga0114129_10231560
424 Ga0114129_10494173
425 Ga0105237_10031248
426 Ga0105238_10035540
427 Ga0099796_10012862
428 Ga0099796_10026771
429 Ga0099796_10071587
430 Ga0105239_10475058
431 Ga0157370_10026641
432 Ga0157370_10220277
433 Ga0157369_10004115
434 Ga0163162_10502818
435 Ga0163163_10643340
436 Ga0182008_10003640
437 Ga0157379_10126719
438 Ga0157376_10200466
439 Ga0213872_10043518
440 Ga0213872_10081676
441 Ga0213876_10128778
442 Ga0213876_10231692
443 Ga0213875_10000353
444 Ga0213875_10001607
445 Ga0213875_10004130
446 Ga0213875_10018047
447 Ga0213871_10011536
448 Ga0209148_1000555
449 Ga0209455_1000388
450 Ga0209130_1003347
451 Ga0209675_1001095
452 Ga0209676_1000026
453 Ga0209025_1000576
454 Ga0209050_1012877
455 Ga0207426_1001035
456 Ga0207692_10001791
457 Ga0207692_10182620
458 Ga0207688_10134519
459 Ga0207699_10017328
460 Ga0207699_10071655
461 Ga0207699_10148626
462 Ga0207684_10161567
463 Ga0207684_10203394
464 Ga0207707_10009536
465 Ga0207707_10051161
466 Ga0207707_10071386
467 Ga0207707_10073466
468 Ga0207707_10094104
469 Ga0207707_10188773
470 Ga0207707_10352705
471 Ga0207693_10002561
472 Ga0207693_10019754
473 Ga0207693_10051091
474 Ga0207693_10288985
475 Ga0207663_10253750
476 Ga0207663_10291017
477 Ga0207660_10023679
478 Ga0207660_10202642
479 Ga0207652_10124542
480 Ga0207652_10222667
481 Ga0207652_10453735
482 Ga0207646_10108060
483 Ga0207694_10125779
484 Ga0207650_10413331
485 Ga0207700_10001661
486 Ga0207700_10120028
487 Ga0207664_10000823
488 Ga0207664_10072196
489 Ga0207664_10246115
490 Ga0207664_10376862
491 Ga0207644_10071933
492 Ga0207644_10105164
493 Ga0207665_10058310
494 Ga0207665_10107139
495 Ga0207712_10214891
496 Ga0207703_10148637
497 Ga0207675_100014244
498 Ga0209179_1006822
499 Ga0207428_10000096
500 Ga0268265_10167650
501 Ga0265338_10085950
502 Ga0265338_10245778
503 Ga0265328_10017513
504 Ga0265320_10007817
505 Ga0265329_10064619
506 Ga0265331_10000019
507 Ga0265331_10005303
508 Ga0265331_10007377
509 Ga0265327_10000100
510 Ga0265327_10000424
511 Ga0265327_10007923
512 Ga0265313_10001203
513 Ga0265313_10003796
514 Ga0265313_10006780
515 Ga0307508_10075576
516 Ga0265314_10006032
517 Ga0265342_10013245
518 Ga0307516_10172293
519 Ga0307413_10271719
520 Ga0307410_10067736
521 Ga0307406_10232695
522 Ga0307407_10053908
523 Ga0307407_10220451
524 Ga0307407_10324743
525 Ga0307409_100010825
526 Ga0307409_100046758
527 Ga0307409_100421800
528 Ga0307414_10011115
529 Ga0373926_0042061
530 Ga0373932_0011052
531 Ga0373936_0086021
532 Ga0373953_0126942
533 Ga0373953_0130417
534 Ga0373954_0107561
535 Ga0373957_0017880
536 Ga0373943_0061499
537 Ga0373946_0026809
538 Ga0373946_0049479
539 Ga0373955_0245405
540 Ga0373942_0025430
541 Ga0373961_0038445
542 Ga0373931_0037673
543 Ga0373935_0247366
544 Ga0373927_0021711
545 Ga0373927_0047026
546 Ga0373933_0015531
547 Ga0373947_0121461
548 Ga0373937_0014970
549 Ga0373937_0021471
550 Ga0373937_0275489
551 Ga0373925_0043527
552 Ga0373925_0184999
553 Ga0373925_0205323
554 Ga0395900_0074697
555 Ga0395900_0308091
556 Ga0395898_0184779
557 Ga0395898_0280771
558 Ga0395898_0447321
559 Ga0395905_0096665
560 Ga0436364_0056643
561 Ga0436364_0080149
562 Ga0436364_0470773
563 Ga0436364_0490227
564 Ga0436364_0537565
565 Ga0436364_1050354
566 Ga0436364_1505086
567 Ga0436364_1516895
568 Ga0436364_1525673
569 Ga0436365_0123950
570 Ga0436365_0211525
571 Ga0436365_0730963
572 Ga0436365_1204748
573 Ga0436365_1372182
574 Ga0436365_1422184
575 Ga0436365_1869412
576 Ga0436360_0154979
577 Ga0436360_0299947
578 Ga0436360_0377623
579 Ga0436360_0683640
580 Ga0436360_0762993
581 Ga0436360_0805231
582 Ga0436360_0905364
583 Ga0436360_0940377
584 Ga0436360_1182115
585 Ga0436361_0618915
586 Ga0436361_0692564
587 Ga0436361_1041762
588 Ga0436363_0411506
589 Ga0436363_0653676
590 Ga0436363_0670854
591 Ga0436362_0142555
592 Ga0436362_0840094
593 Ga0436362_1137549
594 Ga0436362_1178085
595 Ga0451577_0223973
596 Ga0451577_0598366
597 Ga0453683_0029390
598 Ga0453684_0000048
599 Ga0453684_0000077
600 Ga0453684_0004682
601 Ga0453684_0023051
602 Ga0451576_0000056
603 Ga0451576_0000301
604 Ga0451576_0033389
605 Ga0451576_0303368
606 Ga0451576_0578983
607 Ga0495640_0085159
608 Ga0495667_0062309
609 Ga0495634_0149481
610 Ga0495657_0207253
611 Ga0495599_0074855
612 Ga0495680_0264361
613 Ga0496103_0087886
614 Ga0496106_0016041
615 Ga0496107_0074784
616 Ga0496110_0071391
617 Ga0496113_0011214
618 Ga0501032_0000280
619 Ga0501034_0000001
620 Ga0501034_0153730
621 Ga0501034_0245050
622 Ga0501034_0337340
623 Ga0501036_0005647
624 Ga0501036_0119478
625 Ga0501036_0385135
626 Ga0501037_0087158
627 Ga0501038_0000019
628 Ga0501039_0000194
629 Ga0501039_0132944
630 Ga0501041_0041089
631 Ga0501042_0055820
632 Ga0501047_0011921
633 Ga0501047_0155065
634 Ga0501047_0193853
635 Ga0501047_0221755
636 Ga0501068_0076382
637 Ga0501069_0057390
638 Ga0501069_0180431
639 Ga0501070_0072744
640 Ga0501072_0070113
641 Ga0501073_0017643
642 Ga0501073_0290720
643 Ga0501074_0077357
644 Ga0501074_0191538
645 Ga0501077_0057577
646 Ga0501077_0147563
647 Ga0501079_0052150
648 Ga0501080_0171115
649 Ga0501080_0438070
650 Ga0501080_0501431
651 Ga0501081_0023109
652 Ga0501083_0002726
653 Ga0501044_0172633
654 Ga0501044_0197303
655 Ga0501044_0214909
656 Ga0501044_0255939
657 Ga0501045_0414669
658 nmdc:mga03683_30893_c1
659 nmdc:mga05p37_109793_c1
660 nmdc:mga05p37_121161_c1
661 nmdc:mga05p37_162370_c1
662 nmdc:mga05p37_25550_c1
663 nmdc:mga0qj67_129106_c1
664 nmdc:mga0qj67_58991_c1
665 nmdc:mga06r32_5580_c1
666 nmdc:mga08y16_128648_c1
667 nmdc:mga08y16_568_c1
668 Ga0495601_0023196
669 Ga0495601_0173104
670 Ga0495619_0001439
671 Ga0495619_0006830
672 Ga0500578_0039173
673 Ga0500642_0001360
674 Ga0500559_0038490
675 Ga0500588_0000186
676 Ga0501084_0453220
677 Ga0590075_013503
678 Ga0590077_004837
679 Ga0501082_0012550
680 Ga0501082_0170826
681 2512034502
682 2523105372
683 2524610599
684 2599103924
685 2842338278
686 2842775784
687 2844534288
688 2846955059
689 2846957613
690 2848858648
691 2848863751
692 2883292904
693 2883355876
694 2883579457
695 2894773516
696 2897807133
697 2909401298
698 2929204677
699 641337109
700 643392715
701 8054003962
702 8055913528

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

38

97

0.98

PF03466

LysR_substrate

LysR substrate binding domain

121

327

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.9225 1 47
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.8866 5 46
6eo3-assembly1.cif.gz_B conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c p212121 0.8721 4 46
1je8-assembly2.cif.gz_E two-component response regulator narl/dna complex: dna bending found in a high affinity site 0.8624 4 45
6jqs-assembly1.cif.gz_A structure of transcription factor, gere 0.8543 1 46
ID Description Score Start End Superfamily
af_P67662_3_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.007 4 47 1.10.10.10
af_P46068_8_97_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.004 3 47 1.10.10.10
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.002 5 47 1.10.10.10
af_P75836_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.002 1 47 1.10.10.10
af_P45463_8_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9945 4 47 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3R7PZM7-F1-model_v4 LysR family transcriptional regulator 0.8864 112 271 GO:0003700
GO:0006351
GO:0043565
AF-A0A7Y7A3F7-F1-model_v4 deleted 0.8761 76 269
AF-A0A3R7PZM7-F1-model_v4 LysR family transcriptional regulator 0.8761 112 271 GO:0003700
GO:0006351
GO:0043565
AF-A0A0N1BQN5-F1-model_v4 LysR substrate-binding domain-containing protein 0.8703 68 269 GO:0003700
GO:0006351
GO:0016020
GO:0043565
AF-A0A540WHB1-F1-model_v4 LysR family transcriptional regulator 0.8675 65 229 GO:0003700

Map