|
Taxon Oid |
3300003163
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Complete |
| Study Name |
Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies |
| Genome Name Sample Name |
Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300003163 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Soil |
| Ncbi Species |
Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies |
| Img Submission Id |
45824 |
|
Gold Analysis Project Id
|
Ga0006759
|
| Gold Analysis Project Type |
Metatranscriptome Analysis |
|
Gold Sequencing Project Id
|
Gp0061274
|
|
Gold Study Id
|
Gs0110115
|
| Add Date |
08/06/2014 00:00:00 |
| Assembly Method |
rnnotator v. 3.3.1 |
| Funding Agency |
E; D; O |
| Has Coverage |
False |
| Public Release Date |
08/13/2014 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Neha Varghese |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected]; [email protected] |
| Alt2 Contact Names |
Mary Firestone; Jennifer Pett-Ridge; Erin Nuccio |
| Contact Email |
[email protected], [email protected]; [email protected]; [email protected] |
| Contact Name |
Mary Firestone, Mary Firestone; Jennifer Pett-Ridge; Erin Nuccio |
| Award Doi |
10.46936/jejc.proj.2013.48086/60005298 |
| Funding Program |
CSP-EMSL |
| Funding Year |
2014 |
| Is Published |
False |
| Ncbi Bioproject Accession |
PRJNA366857 |
| Ncbi Biosample Accession |
SAMN06268229 |
| Sequencing Method |
Illumina HiSeq 2500 |
| Sequencing Strategy |
Metatranscriptome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Soil |
| Cultured |
False |
| Depth In Meters |
0.000000 |
| Geographic Location |
Hopland, California, USA |
| Habitat |
Avena fatua rhizosphere |
| Isolation |
soil |
| Isolation Country |
8855 |
| Latitude |
38.9736 |
| Longitude |
-123.117 |
| Sample Collection Date |
2013/3/15 |
| Host Name |
Avena fatua |
| Genome Size Assembled |
118338500 |
| Gene Count Assembled |
345367 |