F417759

General Info

Members Datasets Scaffolds Average Seq Length
349 232 698 334

Family's Representative Sequence

Representative Sequence 3300002773|JGI25152J39213_1000004|JGI25152J39213_10000041
Length 403
Sequence LQRSKGFTTFVANLAGRAEIVAGIVVKELQASADYCRIGPPSRMTPLVSFTLSLFARHSKENRMRRTRVACFGELLLRLGAPGRELLLQTPRLEVHIGGAEANVGVSLAHFGHEVAMLGTVADNPLGAAATGELRRHGVDTSRVRAVPGRMGLYFLTTGAGHRASEVVYDRAQSAFELARPQDYDWPALLAGADWLHLSGVSPALGPDAAQATLDAARAARAQGTRVSFDGNFRPKLWQRWGGDATAILRELFACADIVFADYRDIGVVLGGEFPHEDVRERVRAAAAQAFAAFPQLRWMACTQRATLSVDHHSLGAMLLGSDGTEALAPAESVTGIIDRIGGGDAFAAGVLHGLIAGLDAEATVRFGLAAACLKHTIPGDFNPVSVGEVEALIGEGRFDVRR

Samples

Sample ID Description Type Environment
1 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
13 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
14 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
15 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
16 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
17 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
18 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
40 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
56 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
57 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
62 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
63 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
71 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
102 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
103 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
104 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
105 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
106 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
107 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
108 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
109 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
110 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
111 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
112 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
115 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
116 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
120 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
121 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
122 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
123 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
124 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
125 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
126 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
127 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
128 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
129 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
130 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
131 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
132 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
133 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
134 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
135 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
136 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
137 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
138 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
139 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
140 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
141 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
142 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
143 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
144 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
145 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
146 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
147 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
148 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
149 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
150 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
151 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
152 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
153 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
154 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
155 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
156 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
157 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
158 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
159 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
160 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
161 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
162 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
163 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
164 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
165 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
166 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
167 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
168 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
169 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
170 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
171 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
172 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
173 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
176 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
177 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
178 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
179 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
180 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
181 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
182 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
183 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
184 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
185 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
186 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
187 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
188 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
189 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
190 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
191 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
192 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
193 2643221593 Lysobacter sp. Root690 Isolate Unclassified
194 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
195 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
196 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
197 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
198 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
199 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
200 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
201 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
202 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
203 2818991457 Xanthomonas translucens 569 Isolate Unclassified
204 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
205 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
206 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
207 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
208 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
209 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
210 2896184354 Aurantiacibacter suaedae GH3-15 Isolate Rhizosphere
211 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
212 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
213 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
214 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
215 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
216 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
217 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
218 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
219 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
220 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
221 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
222 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
223 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
224 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
225 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
226 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
227 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
228 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
229 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
230 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
231 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere
232 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.53
Metatranscriptomes 0.29
Isolates 13.18

Biome Distribution

Category Percentage (%)
Aerial Root 0.29
Bulb 0
Endosphere 13.47
Nodule 0.29
Rhizoplane 0.86
Rhizosphere 60.17
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000004 3300002773 Bacteria 191383
2 JGI24740J21852_10060231 3300001979 Bacteria 1049
3 JGI24739J22299_10000188 3300001989 Bacteria 20477
4 JGI24739J22299_10002250 3300001989 Bacteria 7418
5 JGI24739J22299_10024541 3300001989 Bacteria 2125
6 JGI24737J22298_10003205 3300001990 Bacteria 5803
7 JGI24737J22298_10016996 3300001990 Bacteria 2345
8 JGI25152J39213_1000188 3300002773 Bacteria 41653
9 JGI25150J39212_1000338 3300002774 Bacteria 23091
10 JGI25151J46595_10000010 3300003187 Bacteria 277507
11 JGI25406J46586_10008272 3300003203 Bacteria 4721
12 JGI25153J46596_10000013 3300003215 Bacteria 303690
13 JGI25153J46596_10000045 3300003215 Bacteria 149347
14 rootH2_10016265 3300003320 Bacteria 2022
15 rootL2_10132785 3300003322 Bacteria 2660
16 rootH1_10164916 3300003323 Bacteria 4082
17 Ga0055525_1000080 3300003759 Bacteria 164642
18 Ga0055536_1003322 3300003781 Bacteria 8706
19 Ga0055528_1000719 3300003790 Bacteria 23377
20 Ga0055530_10007205 3300003791 Bacteria 4746
21 Ga0055531_10030356 3300003794 Bacteria 1817
22 Ga0058692_1000005 3300003856 Bacteria 398815
23 Ga0058692_1000118 3300003856 Bacteria 51072
24 Ga0070658_10000003 3300005327 Bacteria 465963
25 Ga0068869_100266753 3300005334 Bacteria 1372
26 Ga0070680_100001557 3300005336 Bacteria 16756
27 Ga0070660_100000844 3300005339 Bacteria 20394
28 Ga0070660_100280623 3300005339 Bacteria 1363
29 Ga0070661_100000011 3300005344 Bacteria 175355
30 Ga0070668_100020413 3300005347 Bacteria 4999
31 Ga0070669_100036895 3300005353 Bacteria 3544
32 Ga0070659_100004660 3300005366 Bacteria 9789
33 Ga0070659_100045723 3300005366 Bacteria 3430
34 Ga0070678_100000141 3300005456 Bacteria 29532
35 Ga0070678_100000338 3300005456 Bacteria 21889
36 Ga0070662_100155294 3300005457 Bacteria 1786
37 Ga0070681_10087097 3300005458 Bacteria 3076
38 Ga0070679_100000008 3300005530 Bacteria 194672
39 Ga0070684_100293077 3300005535 Bacteria 1492
40 Ga0070665_100000088 3300005548 Bacteria 177729
41 Ga0070665_100003772 3300005548 Bacteria 16039
42 Ga0070665_100015624 3300005548 Bacteria 7625
43 Ga0070665_100029513 3300005548 Bacteria 5521
44 Ga0070665_100335744 3300005548 Bacteria 1516
45 Ga0068855_100202516 3300005563 Bacteria 2234
46 Ga0068852_100009002 3300005616 Bacteria 7388
47 Ga0068859_100002646 3300005617 Bacteria 18230
48 Ga0068861_100000084 3300005719 Bacteria 45078
49 Ga0068860_100005745 3300005843 Bacteria 12514
50 Ga0068860_100006522 3300005843 Bacteria 11716
51 Ga0081455_10000039 3300005937 Bacteria 135506
52 Ga0081539_10000006 3300005985 Bacteria 534555
53 Ga0081539_10000938 3300005985 Bacteria 54684
54 Ga0081539_10006532 3300005985 Bacteria 11123
55 Ga0081539_10007880 3300005985 Bacteria 9498
56 Ga0075364_10133748 3300006051 Bacteria 1665
57 Ga0075362_10063227 3300006177 Bacteria 1678
58 Ga0068865_100133803 3300006881 Bacteria 1860
59 Ga0097620_100002646 3300006931 Bacteria 18230
60 Ga0105251_10000526 3300009011 Bacteria 36131
61 Ga0105240_10009841 3300009093 Bacteria 13494
62 Ga0105240_10026949 3300009093 Bacteria 7534
63 Ga0105245_10002743 3300009098 Bacteria 15831
64 Ga0105248_10003056 3300009177 Bacteria 18559
65 Ga0105238_10012854 3300009551 Bacteria 8448
66 Ga0105238_10021357 3300009551 Bacteria 6596
67 Ga0105246_10678557 3300011119 Bacteria 900
68 Ga0157373_10025222 3300013100 Bacteria 4302
69 Ga0157373_10046372 3300013100 Bacteria 3101
70 Ga0157373_10264032 3300013100 Bacteria 1218
71 Ga0157371_10000062 3300013102 Bacteria 169669
72 Ga0157371_10156312 3300013102 Bacteria 1627
73 Ga0157370_10018866 3300013104 Bacteria 6937
74 Ga0157370_10027343 3300013104 Bacteria 5625
75 Ga0157370_10080928 3300013104 Bacteria 3058
76 Ga0157370_10486996 3300013104 Bacteria 1133
77 Ga0157369_10382728 3300013105 Bacteria 1460
78 Ga0157372_10106775 3300013307 Bacteria 3203
79 Ga0157380_10036488 3300014326 Bacteria 3803
80 Ga0182008_10000083 3300014497 Bacteria 73635
81 Ga0182008_10017669 3300014497 Bacteria 3698
82 Ga0182006_1008210 3300015261 Bacteria 4736
83 Ga0183363_1003 3300015690 Bacteria 421263
84 Ga0163161_10004070 3300017792 Bacteria 10224
85 Ga0163161_10018199 3300017792 Bacteria 4925
86 Ga0163161_10163507 3300017792 Bacteria 1698
87 Ga0206354_10040771 3300020081 Bacteria 5677
88 Ga0209674_108579 3300025226 Bacteria 1200
89 Ga0207425_1000015 3300025245 Bacteria 466368
90 Ga0209129_1000074 3300025258 Bacteria 205648
91 Ga0209565_1000033 3300025263 Bacteria 313960
92 Ga0209455_1015230 3300025272 Bacteria 1700
93 Ga0209673_1000062 3300025273 Bacteria 260727
94 Ga0209675_1000994 3300025291 Bacteria 17915
95 Ga0209676_1000104 3300025292 Bacteria 226581
96 Ga0209025_1000002 3300025294 Bacteria 1393142
97 Ga0209564_1000637 3300025295 Bacteria 53200
98 Ga0209758_1000003 3300025297 Bacteria 1398533
99 Ga0209758_1000007 3300025297 Bacteria 1270410
100 Ga0209050_1000741 3300025298 Bacteria 47351
101 Ga0209050_1001056 3300025298 Bacteria 33938
102 Ga0209050_1009768 3300025298 Bacteria 4844
103 Ga0209256_1016114 3300025299 Bacteria 2568
104 Ga0209257_1000046 3300025304 Bacteria 477765
105 Ga0209257_1004080 3300025304 Bacteria 11712
106 Ga0207647_10026000 3300025904 Bacteria 3836
107 Ga0207647_10055222 3300025904 Bacteria 2441
108 Ga0207705_10000005 3300025909 Bacteria 673478
109 Ga0207654_10000150 3300025911 Bacteria 44134
110 Ga0207707_10121788 3300025912 Bacteria 2281
111 Ga0207695_10005401 3300025913 Bacteria 16969
112 Ga0207695_10010263 3300025913 Bacteria 11479
113 Ga0207695_10037342 3300025913 Bacteria 5242
114 Ga0207671_10041133 3300025914 Bacteria 3421
115 Ga0207660_10000185 3300025917 Bacteria 39411
116 Ga0207657_10000820 3300025919 Bacteria 32824
117 Ga0207657_10033520 3300025919 Bacteria 4629
118 Ga0207657_10226932 3300025919 Bacteria 1495
119 Ga0207657_10266322 3300025919 Bacteria 1363
120 Ga0207649_10000038 3300025920 Bacteria 129260
121 Ga0207652_10000008 3300025921 Bacteria 286698
122 Ga0207694_10061243 3300025924 Bacteria 2929
123 Ga0207687_10001034 3300025927 Bacteria 18922
124 Ga0207690_10003211 3300025932 Bacteria 9808
125 Ga0207690_10029149 3300025932 Bacteria 3506
126 Ga0207706_10013211 3300025933 Bacteria 7512
127 Ga0207706_10163711 3300025933 Bacteria 1955
128 Ga0207709_10001257 3300025935 Bacteria 18191
129 Ga0207711_10001846 3300025941 Bacteria 19327
130 Ga0207667_10554566 3300025949 Bacteria 1162
131 Ga0207668_10001589 3300025972 Bacteria 13274
132 Ga0207678_10245767 3300026067 Bacteria 1532
133 Ga0207702_10002352 3300026078 Bacteria 18048
134 Ga0207674_10131545 3300026116 Bacteria 2465
135 Ga0207675_100000301 3300026118 Bacteria 47388
136 Ga0207683_10001918 3300026121 Bacteria 18405
137 Ga0207698_10060414 3300026142 Bacteria 2948
138 Ga0209371_1000031 3300027312 Bacteria 399263
139 Ga0209371_1000332 3300027312 Bacteria 51427
140 Ga0268266_10000074 3300028379 Bacteria 230993
141 Ga0268266_10001588 3300028379 Bacteria 26557
142 Ga0268264_10006637 3300028381 Bacteria 9729
143 Ga0268264_10009025 3300028381 Bacteria 8272
144 Ga0307517_10009042 3300028786 Bacteria 14199
145 Ga0268256_1000034 3300030500 Bacteria 398909
146 Ga0268256_1000285 3300030500 Bacteria 52251
147 Ga0316176_1186413 3300030732 Bacteria 1876
148 Ga0316183_1073739 3300030742 Bacteria 10429
149 Ga0307513_10052860 3300031456 Bacteria 4371
150 Ga0307408_100033089 3300031548 Bacteria 3609
151 Ga0307408_100175080 3300031548 Bacteria 1716
152 Ga0307405_10111791 3300031731 Bacteria 1852
153 Ga0307405_10203893 3300031731 Bacteria 1438
154 Ga0307405_10325983 3300031731 Bacteria 1175
155 Ga0307413_10246412 3300031824 Bacteria 1323
156 Ga0307413_10260810 3300031824 Bacteria 1292
157 Ga0307410_10009526 3300031852 Bacteria 5450
158 Ga0307412_10000508 3300031911 Bacteria 23240
159 Ga0307409_100266705 3300031995 Bacteria 1575
160 Ga0307416_100113445 3300032002 Bacteria 2395
161 Ga0307416_100318083 3300032002 Bacteria 1557
162 Ga0307414_10000473 3300032004 Bacteria 21093
163 Ga0307414_10034653 3300032004 Bacteria 3350
164 Ga0307414_10077033 3300032004 Bacteria 2425
165 Ga0307414_10389480 3300032004 Bacteria 1207
166 Ga0307415_100012124 3300032126 Bacteria 4972
167 Ga0307415_100133042 3300032126 Bacteria 1886
168 Ga0307510_10016359 3300033180 Bacteria 8754
169 Ga0307510_10052432 3300033180 Bacteria 4300
170 Ga0395899_0009211 3300037312 Bacteria 7583
171 Ga0395905_0216913 3300037471 Bacteria 1791
172 Ga0395901_0141749 3300038443 Bacteria 2526
173 Ga0237819_00007 3300038705 Bacteria 74520
174 Ga0237819_00642 3300038705 Bacteria 11376
175 Ga0451791_1533195 3300041451 Bacteria 2541
176 Ga0451802_1140993 3300041460 Bacteria 2407
177 Ga0451833_0056216 3300041491 Bacteria 1705
178 Ga0439448_0001445 3300042005 Bacteria 6152
179 Ga0439448_0002558 3300042005 Bacteria 4957
180 Ga0439432_014171 3300042006 Bacteria 2699
181 Ga0439432_029135 3300042006 Bacteria 1796
182 Ga0439449_0013517 3300042007 Bacteria 3072
183 Ga0439455_0000258 3300042012 Bacteria 6442
184 Ga0439455_0012891 3300042012 Bacteria 1884
185 Ga0450911_000207 3300042115 Bacteria 23143
186 Ga0439458_0020892 3300042157 Bacteria 1513
187 Ga0450901_001329 3300042533 Bacteria 2843
188 Ga0450901_003134 3300042533 Bacteria 1732
189 Ga0451577_0007992 3300042876 Bacteria 10329
190 Ga0466972_0096524 3300044658 Bacteria 1400
191 Ga0453684_0169485 3300044712 Bacteria 2575
192 Ga0466968_0046095 3300044735 Bacteria 1851
193 Ga0466960_0027333 3300044901 Bacteria 2601
194 Ga0466959_0011739 3300045049 Bacteria 6304
195 Ga0466967_0061693 3300045976 Bacteria 3327
196 Ga0495627_000382 3300046453 Bacteria 40675
197 Ga0495627_005999 3300046453 Bacteria 4820
198 Ga0495627_038141 3300046453 Bacteria 1487
199 Ga0495591_028393 3300046458 Bacteria 1712
200 Ga0495638_0000523 3300046460 Bacteria 44816
201 Ga0495596_0001811 3300046500 Bacteria 11884
202 Ga0495583_0004178 3300046506 Bacteria 10518
203 Ga0495583_0068893 3300046506 Bacteria 1559
204 Ga0495606_0113706 3300046507 Bacteria 1629
205 Ga0495610_0000100 3300046512 Bacteria 100499
206 Ga0495610_0017998 3300046512 Bacteria 4005
207 Ga0495632_0011973 3300046519 Bacteria 5029
208 Ga0495637_0046481 3300046520 Bacteria 1836
209 Ga0495643_0001357 3300046522 Bacteria 22915
210 Ga0495663_0000214 3300046525 Bacteria 23170
211 Ga0495663_0000840 3300046525 Bacteria 10504
212 Ga0495663_0003774 3300046525 Bacteria 4322
213 Ga0495654_0101302 3300046530 Bacteria 1325
214 Ga0495598_0018735 3300046537 Bacteria 1803
215 Ga0495633_0000570 3300046558 Bacteria 35872
216 Ga0495633_0007814 3300046558 Bacteria 6108
217 Ga0495625_0044091 3300046660 Bacteria 3230
218 Ga0495625_0052377 3300046660 Bacteria 2923
219 Ga0495625_0187614 3300046660 Bacteria 1371
220 Ga0495625_0258903 3300046660 Bacteria 1126
221 Ga0495660_0011408 3300046810 Bacteria 5158
222 Ga0495672_0000214 3300047320 Bacteria 82882
223 Ga0495672_0096575 3300047320 Bacteria 1611
224 Ga0495677_0005792 3300047445 Bacteria 4675
225 Ga0495686_0000818 3300047472 Bacteria 40155
226 Ga0495686_0001359 3300047472 Bacteria 27282
227 Ga0495686_0013825 3300047472 Bacteria 5588
228 Ga0495686_0014029 3300047472 Bacteria 5534
229 Ga0495686_0042996 3300047472 Bacteria 2868
230 Ga0495615_0000125 3300048090 Bacteria 19309
231 Ga0495626_0002422 3300048091 Bacteria 12962
232 Ga0496113_0018711 3300048916 Bacteria 4829
233 Ga0496116_0000465 3300048919 Bacteria 56103
234 Ga0496116_0001802 3300048919 Bacteria 23251
235 Ga0496116_0039704 3300048919 Bacteria 3249
236 Ga0496117_0000829 3300048920 Bacteria 47900
237 Ga0496117_0005490 3300048920 Bacteria 13289
238 Ga0496117_0007004 3300048920 Bacteria 11171
239 Ga0496117_0023154 3300048920 Bacteria 4960
240 Ga0496117_0025333 3300048920 Bacteria 4666
241 Ga0496117_0058004 3300048920 Bacteria 2684
242 Ga0496118_0000406 3300048921 Bacteria 71874
243 Ga0496118_0000703 3300048921 Bacteria 54182
244 Ga0496118_0002786 3300048921 Bacteria 22881
245 Ga0496118_0019933 3300048921 Bacteria 5969
246 Ga0496118_0023775 3300048921 Bacteria 5310
247 Ga0496119_0014077 3300048922 Bacteria 6295
248 Ga0496119_0079903 3300048922 Bacteria 1887
249 Ga0496119_0099183 3300048922 Bacteria 1639
250 Ga0496120_0039863 3300048923 Bacteria 2767
251 Ga0496121_0002648 3300048924 Bacteria 26857
252 Ga0496121_0050206 3300048924 Bacteria 3526
253 Ga0496121_0084253 3300048924 Bacteria 2507
254 Ga0496122_0001061 3300048925 Bacteria 47792
255 Ga0496122_0007557 3300048925 Bacteria 12026
256 Ga0496122_0020312 3300048925 Bacteria 6010
257 Ga0496122_0021769 3300048925 Bacteria 5722
258 Ga0496122_0022899 3300048925 Bacteria 5531
259 Ga0496123_0000300 3300048926 Bacteria 96475
260 Ga0496123_0000604 3300048926 Bacteria 60966
261 Ga0496123_0004482 3300048926 Bacteria 14646
262 Ga0496123_0012901 3300048926 Bacteria 7071
263 Ga0496123_0023501 3300048926 Bacteria 4716
264 Ga0496123_0088243 3300048926 Bacteria 1853
265 Ga0496124_0000507 3300048927 Bacteria 66974
266 Ga0496124_0004362 3300048927 Bacteria 16552
267 Ga0496124_0008152 3300048927 Bacteria 11000
268 Ga0496124_0013459 3300048927 Bacteria 7985
269 Ga0496124_0025413 3300048927 Bacteria 5363
270 Ga0496124_0071692 3300048927 Bacteria 2870
271 Ga0496125_0002529 3300048928 Bacteria 23603
272 Ga0496125_0008166 3300048928 Bacteria 11020
273 Ga0496125_0008356 3300048928 Bacteria 10853
274 Ga0496125_0011531 3300048928 Bacteria 8831
275 Ga0496125_0012073 3300048928 Bacteria 8595
276 Ga0496125_0060706 3300048928 Bacteria 3037
277 Ga0496125_0232041 3300048928 Bacteria 1179
278 Ga0496126_0000437 3300048929 Bacteria 83133
279 Ga0496126_0059794 3300048929 Bacteria 3430
280 Ga0496126_0301305 3300048929 Bacteria 1322
281 Ga0501034_0020454 3300049571 Bacteria 6758
282 Ga0501034_0282918 3300049571 Bacteria 1598
283 Ga0501046_0012593 3300049580 Bacteria 7193
284 Ga0501046_0099705 3300049580 Bacteria 2230
285 Ga0501047_0231773 3300049581 Bacteria 1700
286 Ga0501268_013244 3300049765 Bacteria 1330
287 Ga0501044_0046641 3300049823 Bacteria 4486
288 nmdc:mga00v17_109516_c1 3300050491 Bacteria 1751
289 nmdc:mga07m45_105589_c1 3300050496 Bacteria 1620
290 nmdc:mga0sz30_71245_c1 3300050516 Bacteria 1496
291 Ga0500643_017491 3300053087 Bacteria 2399
292 Ga0500583_0041189 3300053092 Bacteria 2096
293 Ga0500641_0043340 3300053096 Bacteria 1826
294 Ga0500562_020940 3300053108 Bacteria 1698
295 Ga0500617_034207 3300053124 Bacteria 2277
296 Ga0500658_0083603 3300053134 Bacteria 1369
297 Ga0500559_0052766 3300053136 Bacteria 1798
298 Ga0500568_0024994 3300053139 Bacteria 2524
299 Ga0500616_0014057 3300053153 Bacteria 4615
300 Ga0500616_0023663 3300053153 Bacteria 3420
301 Ga0500634_0000385 3300053161 Bacteria 14134
302 Ga0500636_0001090 3300053177 Bacteria 14517
303 Ga0500661_012050 3300055283 Bacteria 1563
304 2511125885 2510917021 Bacteria 5705459
305 2524613623 2524023250 Bacteria 5457705
306 2547499813 2547132130 Bacteria 4660562
307 2547501208 2547132130 Bacteria 4660562
308 2547503095 2547132130 Bacteria 4660562
309 2643977815 2643221593 Bacteria 6296053
310 2738709008 2738541275 Bacteria 4830863
311 2738847433 2738541301 Bacteria 4834102
312 2738863162 2738541304 Bacteria 4833665
313 2739295680 2738543022 Bacteria 4835059
314 2739357358 2738543033 Bacteria 4833336
315 2747950642 2747842428 Bacteria 4689383
316 2748019335 2747842501 Bacteria 5293829
317 2765576979 2765235840 Bacteria 4663337
318 2819554836 2818991438 Bacteria 5793701
319 2819555225 2818991438 Bacteria 5793701
320 2819662005 2818991457 Bacteria 5323295
321 2842392182 2842391507 Bacteria 4486072
322 2842782311 2842780639 Bacteria 4337790
323 2848298030 2848297114 Bacteria 3608511
324 2852688682 2852684882 Bacteria 5463342
325 2857444108 2857442823 Bacteria 4562550
326 2874224108 2874220319 Bacteria 4594709
327 2896186954 2896184354 Bacteria 3258548
328 2919089957 2919089067 Bacteria 4560942
329 2919133338 2919130084 Bacteria 5301837
330 2919135888 2919134579 Bacteria 4480386
331 2928102223 2928100450 Bacteria 4837635
332 2928499968 2928496128 Bacteria 4631123
333 2928962336 2928959182 Bacteria 4725774
334 2929195468 2929195423 Bacteria 5325372
335 2931382724 2931380184 Bacteria 4455911
336 2937613399 2937610967 Bacteria 4618818
337 2939592803 2939589442 Bacteria 4214238
338 2939623243 2939622612 Bacteria 4698046
339 2939628141 2939626828 Bacteria 4695272
340 2961050872 2961047084 Bacteria 4594415
341 2961067482 2961064222 Bacteria 4749990
342 2974310748 2974307012 Bacteria 4172388
343 2977251493 2977247770 Bacteria 4160543
344 2984517876 2984514374 Bacteria 4172479
345 2987607017 2987605356 Bacteria 4187822
346 8021622441 8021622325 Bacteria 4844743
347 8021628822 8021626552 Bacteria 4665214
348 8021650978 8021648035 Bacteria 4772378
349 8054306376 8054302542 Bacteria 5698134
350 JGI25152J39213_1000004
351 JGI24740J21852_10060231
352 JGI24739J22299_10000188
353 JGI24739J22299_10002250
354 JGI24739J22299_10024541
355 JGI24737J22298_10003205
356 JGI24737J22298_10016996
357 JGI25152J39213_1000188
358 JGI25150J39212_1000338
359 JGI25151J46595_10000010
360 JGI25406J46586_10008272
361 JGI25153J46596_10000013
362 JGI25153J46596_10000045
363 rootH2_10016265
364 rootL2_10132785
365 rootH1_10164916
366 Ga0055525_1000080
367 Ga0055536_1003322
368 Ga0055528_1000719
369 Ga0055530_10007205
370 Ga0055531_10030356
371 Ga0058692_1000005
372 Ga0058692_1000118
373 Ga0070658_10000003
374 Ga0068869_100266753
375 Ga0070680_100001557
376 Ga0070660_100000844
377 Ga0070660_100280623
378 Ga0070661_100000011
379 Ga0070668_100020413
380 Ga0070669_100036895
381 Ga0070659_100004660
382 Ga0070659_100045723
383 Ga0070678_100000141
384 Ga0070678_100000338
385 Ga0070662_100155294
386 Ga0070681_10087097
387 Ga0070679_100000008
388 Ga0070684_100293077
389 Ga0070665_100000088
390 Ga0070665_100003772
391 Ga0070665_100015624
392 Ga0070665_100029513
393 Ga0070665_100335744
394 Ga0068855_100202516
395 Ga0068852_100009002
396 Ga0068859_100002646
397 Ga0068861_100000084
398 Ga0068860_100005745
399 Ga0068860_100006522
400 Ga0081455_10000039
401 Ga0081539_10000006
402 Ga0081539_10000938
403 Ga0081539_10006532
404 Ga0081539_10007880
405 Ga0075364_10133748
406 Ga0075362_10063227
407 Ga0068865_100133803
408 Ga0097620_100002646
409 Ga0105251_10000526
410 Ga0105240_10009841
411 Ga0105240_10026949
412 Ga0105245_10002743
413 Ga0105248_10003056
414 Ga0105238_10012854
415 Ga0105238_10021357
416 Ga0105246_10678557
417 Ga0157373_10025222
418 Ga0157373_10046372
419 Ga0157373_10264032
420 Ga0157371_10000062
421 Ga0157371_10156312
422 Ga0157370_10018866
423 Ga0157370_10027343
424 Ga0157370_10080928
425 Ga0157370_10486996
426 Ga0157369_10382728
427 Ga0157372_10106775
428 Ga0157380_10036488
429 Ga0182008_10000083
430 Ga0182008_10017669
431 Ga0182006_1008210
432 Ga0183363_1003
433 Ga0163161_10004070
434 Ga0163161_10018199
435 Ga0163161_10163507
436 Ga0206354_10040771
437 Ga0209674_108579
438 Ga0207425_1000015
439 Ga0209129_1000074
440 Ga0209565_1000033
441 Ga0209455_1015230
442 Ga0209673_1000062
443 Ga0209675_1000994
444 Ga0209676_1000104
445 Ga0209025_1000002
446 Ga0209564_1000637
447 Ga0209758_1000003
448 Ga0209758_1000007
449 Ga0209050_1000741
450 Ga0209050_1001056
451 Ga0209050_1009768
452 Ga0209256_1016114
453 Ga0209257_1000046
454 Ga0209257_1004080
455 Ga0207647_10026000
456 Ga0207647_10055222
457 Ga0207705_10000005
458 Ga0207654_10000150
459 Ga0207707_10121788
460 Ga0207695_10005401
461 Ga0207695_10010263
462 Ga0207695_10037342
463 Ga0207671_10041133
464 Ga0207660_10000185
465 Ga0207657_10000820
466 Ga0207657_10033520
467 Ga0207657_10226932
468 Ga0207657_10266322
469 Ga0207649_10000038
470 Ga0207652_10000008
471 Ga0207694_10061243
472 Ga0207687_10001034
473 Ga0207690_10003211
474 Ga0207690_10029149
475 Ga0207706_10013211
476 Ga0207706_10163711
477 Ga0207709_10001257
478 Ga0207711_10001846
479 Ga0207667_10554566
480 Ga0207668_10001589
481 Ga0207678_10245767
482 Ga0207702_10002352
483 Ga0207674_10131545
484 Ga0207675_100000301
485 Ga0207683_10001918
486 Ga0207698_10060414
487 Ga0209371_1000031
488 Ga0209371_1000332
489 Ga0268266_10000074
490 Ga0268266_10001588
491 Ga0268264_10006637
492 Ga0268264_10009025
493 Ga0307517_10009042
494 Ga0268256_1000034
495 Ga0268256_1000285
496 Ga0316176_1186413
497 Ga0316183_1073739
498 Ga0307513_10052860
499 Ga0307408_100033089
500 Ga0307408_100175080
501 Ga0307405_10111791
502 Ga0307405_10203893
503 Ga0307405_10325983
504 Ga0307413_10246412
505 Ga0307413_10260810
506 Ga0307410_10009526
507 Ga0307412_10000508
508 Ga0307409_100266705
509 Ga0307416_100113445
510 Ga0307416_100318083
511 Ga0307414_10000473
512 Ga0307414_10034653
513 Ga0307414_10077033
514 Ga0307414_10389480
515 Ga0307415_100012124
516 Ga0307415_100133042
517 Ga0307510_10016359
518 Ga0307510_10052432
519 Ga0395899_0009211
520 Ga0395905_0216913
521 Ga0395901_0141749
522 Ga0237819_00007
523 Ga0237819_00642
524 Ga0451791_1533195
525 Ga0451802_1140993
526 Ga0451833_0056216
527 Ga0439448_0001445
528 Ga0439448_0002558
529 Ga0439432_014171
530 Ga0439432_029135
531 Ga0439449_0013517
532 Ga0439455_0000258
533 Ga0439455_0012891
534 Ga0450911_000207
535 Ga0439458_0020892
536 Ga0450901_001329
537 Ga0450901_003134
538 Ga0451577_0007992
539 Ga0466972_0096524
540 Ga0453684_0169485
541 Ga0466968_0046095
542 Ga0466960_0027333
543 Ga0466959_0011739
544 Ga0466967_0061693
545 Ga0495627_000382
546 Ga0495627_005999
547 Ga0495627_038141
548 Ga0495591_028393
549 Ga0495638_0000523
550 Ga0495596_0001811
551 Ga0495583_0004178
552 Ga0495583_0068893
553 Ga0495606_0113706
554 Ga0495610_0000100
555 Ga0495610_0017998
556 Ga0495632_0011973
557 Ga0495637_0046481
558 Ga0495643_0001357
559 Ga0495663_0000214
560 Ga0495663_0000840
561 Ga0495663_0003774
562 Ga0495654_0101302
563 Ga0495598_0018735
564 Ga0495633_0000570
565 Ga0495633_0007814
566 Ga0495625_0044091
567 Ga0495625_0052377
568 Ga0495625_0187614
569 Ga0495625_0258903
570 Ga0495660_0011408
571 Ga0495672_0000214
572 Ga0495672_0096575
573 Ga0495677_0005792
574 Ga0495686_0000818
575 Ga0495686_0001359
576 Ga0495686_0013825
577 Ga0495686_0014029
578 Ga0495686_0042996
579 Ga0495615_0000125
580 Ga0495626_0002422
581 Ga0496113_0018711
582 Ga0496116_0000465
583 Ga0496116_0001802
584 Ga0496116_0039704
585 Ga0496117_0000829
586 Ga0496117_0005490
587 Ga0496117_0007004
588 Ga0496117_0023154
589 Ga0496117_0025333
590 Ga0496117_0058004
591 Ga0496118_0000406
592 Ga0496118_0000703
593 Ga0496118_0002786
594 Ga0496118_0019933
595 Ga0496118_0023775
596 Ga0496119_0014077
597 Ga0496119_0079903
598 Ga0496119_0099183
599 Ga0496120_0039863
600 Ga0496121_0002648
601 Ga0496121_0050206
602 Ga0496121_0084253
603 Ga0496122_0001061
604 Ga0496122_0007557
605 Ga0496122_0020312
606 Ga0496122_0021769
607 Ga0496122_0022899
608 Ga0496123_0000300
609 Ga0496123_0000604
610 Ga0496123_0004482
611 Ga0496123_0012901
612 Ga0496123_0023501
613 Ga0496123_0088243
614 Ga0496124_0000507
615 Ga0496124_0004362
616 Ga0496124_0008152
617 Ga0496124_0013459
618 Ga0496124_0025413
619 Ga0496124_0071692
620 Ga0496125_0002529
621 Ga0496125_0008166
622 Ga0496125_0008356
623 Ga0496125_0011531
624 Ga0496125_0012073
625 Ga0496125_0060706
626 Ga0496125_0232041
627 Ga0496126_0000437
628 Ga0496126_0059794
629 Ga0496126_0301305
630 Ga0501034_0020454
631 Ga0501034_0282918
632 Ga0501046_0012593
633 Ga0501046_0099705
634 Ga0501047_0231773
635 Ga0501268_013244
636 Ga0501044_0046641
637 nmdc:mga00v17_109516_c1
638 nmdc:mga07m45_105589_c1
639 nmdc:mga0sz30_71245_c1
640 Ga0500643_017491
641 Ga0500583_0041189
642 Ga0500641_0043340
643 Ga0500562_020940
644 Ga0500617_034207
645 Ga0500658_0083603
646 Ga0500559_0052766
647 Ga0500568_0024994
648 Ga0500616_0014057
649 Ga0500616_0023663
650 Ga0500634_0000385
651 Ga0500636_0001090
652 Ga0500661_012050
653 2511125885
654 2524613623
655 2547499813
656 2547501208
657 2547503095
658 2643977815
659 2738709008
660 2738847433
661 2738863162
662 2739295680
663 2739357358
664 2747950642
665 2748019335
666 2765576979
667 2819554836
668 2819555225
669 2819662005
670 2842392182
671 2842782311
672 2848298030
673 2852688682
674 2857444108
675 2874224108
676 2896186954
677 2919089957
678 2919133338
679 2919135888
680 2928102223
681 2928499968
682 2928962336
683 2929195468
684 2931382724
685 2937613399
686 2939592803
687 2939623243
688 2939628141
689 2961050872
690 2961067482
691 2974310748
692 2977251493
693 2984517876
694 2987607017
695 8021622441
696 8021628822
697 8021650978
698 8054306376

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00294

PfkB

pfkB family carbohydrate kinase

66

386

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2afb-assembly1.cif.gz_A crystal structure of 2-dehydro-3- deoxygluconokinase (ec 2.7.1.45) (tm0067) from thermotoga maritima at 2.05 a resolution 0.9286 4 241
2afb-assembly1.cif.gz_B crystal structure of 2-dehydro-3- deoxygluconokinase (ec 2.7.1.45) (tm0067) from thermotoga maritima at 2.05 a resolution 0.9254 5 239
4gm6-assembly1.cif.gz_F crystal structure of pfkb family carbohydrate kinase(target efi-502146 from listeria grayi dsm 20601 0.9109 5 241
2v78-assembly1.cif.gz_A crystal structure of sulfolobus solfataricus 2-keto-3-deoxygluconate kinase 0.9017 7 252
2dcn-assembly1.cif.gz_D crystal structure of 2-keto-3-deoxygluconate kinase from sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate (alpha-furanose form) 0.8944 6 251
ID Description Score Start End Superfamily
1j5vB00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9206 6 241 3.40.1190.20
af_C6TGN8_61_381_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8896 6 252 3.40.1190.20
3hj6B01 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase; 0.8836 7 195 3.40.1190.30
2varB00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8737 7 251 3.40.1190.20
3ktnA00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8732 5 241 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A3D2EAN7-F1-model_v4 deleted 0.9795 169 241
AF-A0A7W1Z5F6-F1-model_v4 Sugar kinase 0.9777 5 90 GO:0016301
AF-A0A0W1FCS1-F1-model_v4 Carbohydrate kinase PfkB domain-containing protein 0.9737 128 241 GO:0003824
AF-A0A3R7EIH7-F1-model_v4 Sugar kinase 0.9694 1 93 GO:0016301
AF-A0A2R7IN84-F1-model_v4 2-keto-3-deoxygluconate kinase 0.9691 5 241 GO:0016301

Map